Wall clock time and date at job start Tue Mar 31 2020 08:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47108 * 2 1 4 4 C 1.46500 * 119.99931 * 269.99530 * 3 2 1 5 5 C 1.50693 * 109.47638 * 270.00041 * 4 3 2 6 6 H 1.07997 * 120.00004 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00119 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00386 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99959 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47120 * 60.00349 * 9 7 5 11 11 H 1.48498 * 109.46861 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47112 * 300.00102 * 9 7 5 13 13 C 1.34773 * 120.00106 * 90.00108 * 3 2 1 14 14 O 1.21285 * 120.00256 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00161 * 359.97438 * 13 3 2 16 16 C 1.52996 * 109.47230 * 179.97438 * 15 13 3 17 17 C 1.50700 * 109.47172 * 179.97438 * 16 15 13 18 18 C 1.38606 * 120.42134 * 99.97767 * 17 16 15 19 19 C 1.38667 * 118.43634 * 180.02562 * 18 17 16 20 20 C 1.38187 * 119.19469 * 0.02562 * 19 18 17 21 21 N 1.31884 * 120.77685 * 359.97438 * 20 19 18 22 22 C 1.31969 * 121.70563 * 0.02562 * 21 20 19 23 23 Cl 1.73607 * 119.63069 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.47177 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46905 * 300.00212 * 1 2 3 26 26 H 1.09001 * 109.47139 * 59.99999 * 1 2 3 27 27 H 1.09002 * 109.46905 * 239.99788 * 2 1 3 28 28 H 1.09001 * 109.47139 * 120.00001 * 2 1 3 29 29 H 1.09002 * 109.47028 * 30.00549 * 4 3 2 30 30 H 1.09005 * 109.46604 * 150.00095 * 4 3 2 31 31 H 0.96993 * 120.00296 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46808 * 59.99931 * 15 13 3 33 33 H 1.08999 * 109.46606 * 300.00129 * 15 13 3 34 34 H 1.09002 * 109.47087 * 60.00340 * 16 15 13 35 35 H 1.08994 * 109.47559 * 300.00189 * 16 15 13 36 36 H 1.08007 * 120.78524 * 0.05026 * 18 17 16 37 37 H 1.08004 * 120.40720 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.61217 * 180.25801 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1491 2.3896 -2.8779 8 7 3.3491 3.1256 -3.6181 9 14 5.9132 2.0955 -3.4175 10 1 6.1403 0.6387 -3.5948 11 1 6.1606 2.7956 -4.7035 12 1 6.8410 2.6188 -2.3830 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9913 1.3063 2.4723 16 6 2.3234 2.2434 3.6352 17 6 2.0711 1.5335 4.9403 18 6 3.1230 0.9782 5.6520 19 6 2.8440 0.3339 6.8478 20 6 1.5357 0.2662 7.2877 21 7 0.5587 0.8058 6.5850 22 6 0.7866 1.4266 5.4430 23 17 -0.5402 2.1168 4.5616 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6876 -2.0284 30 1 2.0956 3.1410 -1.1384 31 1 3.6749 3.5154 -4.4444 32 1 2.6211 0.4186 2.5302 33 1 0.9432 1.0126 2.5298 34 1 1.6939 3.1314 3.5775 35 1 3.3715 2.5368 3.5775 36 1 4.1362 1.0462 5.2841 37 1 3.6394 -0.1097 7.4283 38 1 1.3112 -0.2303 8.2201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823199455.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:26 Heat of formation + Delta-G solvation = -20.042810 kcal Electronic energy + Delta-G solvation = -21287.627008 eV Core-core repulsion = 17962.596034 eV Total energy + Delta-G solvation = -3325.030975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.57290 -39.05972 -36.76336 -35.39963 -34.58247 -32.80672 -32.19327 -30.24574 -29.92366 -27.22910 -25.06956 -23.86310 -23.01246 -22.67008 -21.38365 -18.26012 -17.62484 -17.05594 -16.61388 -16.31644 -15.52840 -15.25743 -14.89942 -14.69375 -14.21174 -14.05653 -13.45361 -13.35892 -13.31567 -12.88920 -12.30035 -12.10858 -12.02752 -11.92381 -11.84219 -11.55822 -11.27226 -11.16303 -10.95362 -10.90544 -10.62647 -10.50263 -10.12550 -10.05127 -9.83725 -9.64115 -9.12606 -8.81948 -8.42529 -7.64270 -6.03387 -4.08238 0.65326 0.89365 1.69332 3.31488 3.35300 3.36141 3.37805 3.46516 3.92304 4.21436 4.44732 4.47302 4.59268 4.66347 4.91855 5.04351 5.21913 5.23651 5.30652 5.34079 5.42233 5.62002 5.67754 5.71702 5.77844 5.84279 6.08060 6.14039 6.17942 6.25377 6.28644 6.51858 7.09159 7.44542 7.46648 7.57017 7.93065 8.24985 8.45211 8.91026 9.11618 9.56792 11.04660 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.022230 B = 0.003701 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.255618 B = 7563.045538 C = 8115.984193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.597 5.597 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.542 6.542 15 C -0.135 4.135 16 C -0.067 4.067 17 C -0.107 4.107 18 C -0.062 4.062 19 C -0.168 4.168 20 C 0.106 3.894 21 N -0.478 5.478 22 C 0.173 3.827 23 Cl -0.025 7.025 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.206 -8.476 19.309 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.329 5.329 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.420 6.420 15 C -0.176 4.176 16 C -0.105 4.105 17 C -0.110 4.110 18 C -0.088 4.088 19 C -0.188 4.188 20 C -0.051 4.051 21 N -0.189 5.189 22 C 0.009 3.991 23 Cl 0.004 6.996 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.987 -7.751 19.324 21.409 hybrid contribution 1.635 -0.217 -0.729 1.804 sum -3.352 -7.968 18.595 20.506 Atomic orbital electron populations 1.22224 0.96821 1.01404 1.02358 1.21405 0.93514 0.84263 1.02568 1.48249 1.63628 1.13220 1.07782 1.19254 0.96170 0.93650 0.78205 1.21398 0.96964 1.31907 1.06251 0.92565 1.24933 0.97804 0.94948 0.96404 1.69920 1.35721 1.33421 1.14335 0.86570 0.84857 0.78217 0.77832 1.20278 1.21182 1.20206 1.20209 0.78496 0.86922 0.85060 1.90669 1.45978 1.18101 1.87275 1.21694 1.03462 0.99432 0.92982 1.20388 1.04510 0.97791 0.87817 1.20754 0.91795 0.99694 0.98753 1.21621 0.99544 0.94025 0.93563 1.22244 0.98494 1.00636 0.97381 1.22650 0.88034 0.95847 0.98553 1.67020 1.37301 1.08902 1.05649 1.21612 0.88078 0.97319 0.92125 1.98424 1.47115 1.81658 1.72408 0.92218 0.93014 0.92034 0.90016 0.91812 0.95097 0.93907 0.92675 0.89491 0.89351 0.89107 0.89302 0.83576 0.84018 0.81966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.11 1.71 5.93 -4.05 -0.02 1.69 16 3 N -0.60 -12.52 2.46 -175.06 -0.43 -12.95 16 4 C 0.25 6.43 5.16 -5.20 -0.03 6.41 16 5 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 9 Si 0.90 21.78 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.51 10.31 7.67 -10.98 -0.08 10.22 16 14 O -0.54 -13.35 15.56 5.55 0.09 -13.26 16 15 C -0.14 -1.97 4.19 -27.88 -0.12 -2.09 16 16 C -0.07 -0.91 4.10 -27.88 -0.11 -1.02 16 17 C -0.11 -1.24 5.16 -104.44 -0.54 -1.78 16 18 C -0.06 -0.56 9.82 -39.29 -0.39 -0.95 16 19 C -0.17 -1.27 10.11 -39.44 -0.40 -1.67 16 20 C 0.11 0.93 11.18 -17.55 -0.20 0.73 16 21 N -0.48 -5.70 10.34 -10.36 -0.11 -5.81 16 22 C 0.17 2.15 7.27 -17.45 -0.13 2.02 16 23 Cl -0.02 -0.31 26.80 -51.86 -1.39 -1.70 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.69 7.22 -51.93 -0.37 0.31 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 28 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 29 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.09 1.12 7.40 -51.93 -0.38 0.73 16 33 H 0.09 1.19 6.32 -51.93 -0.33 0.86 16 34 H 0.09 1.34 7.32 -51.93 -0.38 0.96 16 35 H 0.09 1.22 7.99 -51.93 -0.41 0.80 16 36 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -33.67 337.82 -8.19 -41.85 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -5.10 Total: -2.13 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.05 Total: -1.94 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.20 Total: -44.66 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.39 Total: -1.70 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.67 -8.19 -41.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823199455.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.810 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds