Wall clock time and date at job start Tue Mar 31 2020 07:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 N 1.31233 * 124.05705 * 269.70495 * 3 2 1 5 5 N 1.27337 * 120.04047 * 179.80520 * 4 3 2 6 6 S 1.56642 * 109.73789 * 0.44799 * 5 4 3 7 7 C 1.38251 * 124.05251 * 89.99962 * 3 2 1 8 8 C 1.47168 * 128.47635 * 359.96262 * 7 3 2 9 9 O 1.21623 * 120.00442 * 0.02562 * 8 7 3 10 10 N 1.34779 * 119.99857 * 179.97438 * 8 7 3 11 11 C 1.46498 * 119.99800 * 179.97438 * 10 8 7 12 12 H 1.08997 * 112.85397 * 336.20058 * 11 10 8 13 13 C 1.53781 * 113.61078 * 107.50622 * 11 10 8 14 14 C 1.53785 * 87.08060 * 89.11654 * 13 11 10 15 15 H 1.09000 * 113.61210 * 270.87780 * 14 13 11 16 16 N 1.46501 * 113.69127 * 139.99135 * 14 13 11 17 17 C 1.36942 * 119.99983 * 107.46132 * 16 14 13 18 18 H 1.08003 * 120.00052 * 0.02562 * 17 16 14 19 19 C 1.38807 * 119.99865 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00186 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00089 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47048 * 59.99836 * 21 19 17 23 23 H 1.48500 * 109.47400 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47311 * 300.00205 * 21 19 17 25 25 C 1.53777 * 87.08080 * 25.43388 * 14 13 11 26 26 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 27 27 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 29 29 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 30 30 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 31 31 H 0.96998 * 119.99675 * 0.02562 * 10 8 7 32 32 H 1.09000 * 113.61472 * 203.66314 * 13 11 10 33 33 H 1.08994 * 113.62062 * 334.56450 * 13 11 10 34 34 H 0.96999 * 120.00231 * 287.46775 * 16 14 13 35 35 H 0.97008 * 119.99858 * 179.97438 * 20 19 17 36 36 H 1.09000 * 113.61007 * 220.02040 * 25 14 13 37 37 H 1.08992 * 113.61915 * 89.11759 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2826 2.1118 -1.0872 5 7 2.7021 3.3108 -0.9981 6 16 2.8433 3.7111 0.5098 7 6 2.2904 2.1507 1.1454 8 6 2.1424 1.7344 2.5492 9 8 1.7464 0.6151 2.8132 10 7 2.4467 2.5931 3.5424 11 6 2.2988 2.1789 4.9398 12 1 1.5810 1.3687 5.0675 13 6 3.6382 1.9362 5.6553 14 6 3.6135 3.4253 6.0385 15 1 4.0830 4.0742 5.2992 16 7 4.0763 3.6898 7.4031 17 6 5.2957 4.2772 7.6108 18 1 5.9161 4.5460 6.7686 19 6 5.7344 4.5273 8.9038 20 7 4.9781 4.2003 9.9302 21 14 7.3975 5.3293 9.1871 22 1 7.4209 6.6637 8.5359 23 1 7.6292 5.4867 10.6455 24 1 8.4643 4.4759 8.6051 25 6 2.0828 3.3519 5.9106 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.7629 3.4856 3.3319 32 1 3.5612 1.2641 6.5100 33 1 4.4524 1.6724 4.9804 34 1 3.5190 3.4487 8.1596 35 1 5.2849 4.3747 10.8338 36 1 1.6413 4.2312 5.4415 37 1 1.5805 3.0669 6.8349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020364278.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:38 Heat of formation + Delta-G solvation = 63.738677 kcal Electronic energy + Delta-G solvation = -20932.747654 eV Core-core repulsion = 17645.686175 eV Total energy + Delta-G solvation = -3287.061479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.30447 -40.03099 -38.08558 -34.66063 -34.19510 -32.85503 -30.79090 -29.88002 -27.83989 -25.24364 -24.90675 -24.15188 -22.95915 -21.99424 -20.64451 -19.24646 -18.61385 -17.71337 -17.10617 -16.35953 -16.02653 -15.16712 -15.00207 -14.76950 -14.60355 -14.41078 -13.94368 -13.67759 -13.27177 -12.79765 -12.76611 -12.40283 -12.27545 -11.96315 -11.80322 -11.65127 -11.21558 -10.94839 -10.85196 -10.62194 -10.44674 -10.33713 -10.17970 -10.13652 -10.04185 -9.99186 -9.65412 -9.06173 -8.92993 -7.05473 -5.85625 -3.15209 -0.56382 0.50851 1.16934 1.65165 2.74702 2.80206 3.38573 3.43505 3.44347 3.56583 4.23990 4.44739 4.52541 4.82923 4.90295 5.03044 5.05996 5.07714 5.33632 5.40578 5.49798 5.66582 5.74881 5.77539 5.85884 5.97125 6.01987 6.15496 6.20954 6.31027 6.51003 6.56098 6.94724 7.21606 7.37543 7.61204 7.88299 8.32548 9.44001 10.00245 10.34503 11.36453 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.003149 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.667704 B = 8889.203792 C = 9611.591870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C 0.103 3.897 4 N -0.249 5.249 5 N -0.255 5.255 6 S 0.418 5.582 7 C -0.288 4.288 8 C 0.603 3.397 9 O -0.513 6.513 10 N -0.696 5.696 11 C 0.115 3.885 12 H 0.102 0.898 13 C -0.176 4.176 14 C 0.165 3.835 15 H 0.074 0.926 16 N -0.711 5.711 17 C -0.249 4.249 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C -0.159 4.159 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.399 0.601 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.065 0.935 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.555 -4.130 -18.768 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.044 4.044 4 N -0.115 5.115 5 N -0.235 5.235 6 S 0.555 5.445 7 C -0.429 4.429 8 C 0.386 3.614 9 O -0.390 6.390 10 N -0.346 5.346 11 C 0.010 3.990 12 H 0.120 0.880 13 C -0.218 4.218 14 C 0.053 3.947 15 H 0.092 0.908 16 N -0.349 5.349 17 C -0.380 4.380 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.199 4.199 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.234 0.766 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.096 -3.266 -19.648 21.500 hybrid contribution 0.581 -0.324 0.901 1.120 sum -7.515 -3.589 -18.746 20.513 Atomic orbital electron populations 1.21662 0.93319 1.02747 1.02168 1.20317 0.96960 0.86394 1.05128 1.22983 0.96682 0.99752 0.85021 1.70610 1.13906 0.98994 1.27992 1.78885 1.18457 1.10510 1.15686 1.82661 1.46041 1.14321 1.01484 1.27842 1.14625 1.00275 1.00157 1.16397 0.78127 0.85114 0.81798 1.90811 1.45959 1.19306 1.82883 1.45609 1.66604 1.16308 1.06122 1.21936 1.00045 0.98922 0.78050 0.88021 1.24341 0.95179 1.02594 0.99687 1.21635 0.91034 0.92829 0.89214 0.90824 1.42383 1.19911 1.71637 1.00951 1.19239 0.94434 1.32271 0.92035 0.91131 1.24770 0.98672 1.01686 0.95543 1.69646 1.37504 1.52802 0.97917 0.86266 0.83770 0.79255 0.76863 1.21179 1.21632 1.21181 1.23887 1.00483 0.96788 0.98722 0.92621 0.91215 0.92134 0.89467 0.87443 0.76610 0.89234 0.92276 0.77942 0.93303 0.91596 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.89 37.16 0.37 -0.84 16 2 C -0.05 -0.45 5.95 -27.88 -0.17 -0.61 16 3 C 0.10 1.15 6.25 -82.84 -0.52 0.63 16 4 N -0.25 -3.01 11.54 33.42 0.39 -2.63 16 5 N -0.25 -2.94 12.51 60.35 0.75 -2.19 16 6 S 0.42 3.77 23.05 -107.50 -2.48 1.29 16 7 C -0.29 -3.14 6.81 -35.95 -0.24 -3.39 16 8 C 0.60 7.46 7.80 -12.63 -0.10 7.36 16 9 O -0.51 -7.56 14.49 5.26 0.08 -7.48 16 10 N -0.70 -8.07 5.26 -54.17 -0.28 -8.36 16 11 C 0.12 1.55 4.32 -67.12 -0.29 1.26 16 12 H 0.10 1.40 7.46 -51.93 -0.39 1.01 16 13 C -0.18 -2.83 7.68 -25.92 -0.20 -3.03 16 14 C 0.17 2.94 4.35 -67.12 -0.29 2.65 16 15 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 16 N -0.71 -16.78 5.40 -52.64 -0.28 -17.06 16 17 C -0.25 -6.61 9.97 -15.06 -0.15 -6.76 16 18 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 21 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 C -0.16 -2.27 7.58 -25.92 -0.20 -2.46 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.11 1.12 6.47 -51.93 -0.34 0.78 16 31 H 0.40 3.84 8.13 -40.82 -0.33 3.51 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.39 9.70 7.92 -40.82 -0.32 9.38 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.40 8.12 -51.93 -0.42 0.98 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -30.87 331.63 -7.74 -38.61 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.73 Total: 8.27 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.88 Total: -5.57 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 1.30 Total: -56.78 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.08 Total: -7.48 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.48 Total: 1.29 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.87 -7.74 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020364278.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.349 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds