Wall clock time and date at job start Tue Mar 31 2020 08:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46854 * 2 1 4 4 C 1.34781 * 119.99809 * 84.25585 * 3 2 1 5 5 O 1.21561 * 120.00235 * 174.69203 * 4 3 2 6 6 C 1.47757 * 119.99747 * 354.97087 * 4 3 2 7 7 C 1.39347 * 124.11451 * 184.20504 * 6 4 3 8 8 N 1.30088 * 112.14627 * 179.84682 * 7 6 4 9 9 S 1.55919 * 108.75195 * 0.40189 * 8 7 6 10 10 N 1.31489 * 124.11569 * 4.50141 * 6 4 3 11 11 C 1.46495 * 120.00405 * 264.25313 * 3 2 1 12 12 H 1.09000 * 110.89019 * 11.35349 * 11 3 2 13 13 C 1.55156 * 111.00970 * 247.46770 * 11 3 2 14 14 C 1.54320 * 102.94445 * 277.43367 * 13 11 3 15 15 N 1.47022 * 107.26937 * 337.79854 * 14 13 11 16 16 C 1.36942 * 125.65099 * 178.98934 * 15 14 13 17 17 H 1.07996 * 120.00230 * 179.97438 * 16 15 14 18 18 C 1.38819 * 119.99622 * 359.97438 * 16 15 14 19 19 N 1.31620 * 120.00077 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99705 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46757 * 60.00062 * 20 18 16 22 22 H 1.48493 * 109.47010 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47266 * 300.00305 * 20 18 16 24 24 C 1.47426 * 108.70578 * 358.94804 * 15 14 13 25 25 H 1.09003 * 109.47360 * 299.99305 * 1 2 3 26 26 H 1.08998 * 109.47551 * 60.00029 * 1 2 3 27 27 H 1.09002 * 109.46989 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47360 * 240.00695 * 2 1 3 29 29 H 1.08998 * 109.47551 * 119.99970 * 2 1 3 30 30 H 1.08009 * 123.93129 * 0.03562 * 7 6 4 31 31 H 1.09002 * 110.71533 * 35.78919 * 13 11 3 32 32 H 1.08999 * 110.72442 * 159.06038 * 13 11 3 33 33 H 1.08998 * 109.88728 * 97.21856 * 14 13 11 34 34 H 1.09006 * 109.88295 * 218.39190 * 14 13 11 35 35 H 0.96998 * 119.99806 * 179.97438 * 19 18 16 36 36 H 1.09007 * 110.36547 * 265.29037 * 24 15 14 37 37 H 1.08991 * 110.37224 * 142.96392 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1327 2.0555 1.1614 5 8 2.6277 3.1657 1.1735 6 6 1.6621 1.4427 2.4208 7 6 1.6610 2.0926 3.6535 8 7 1.1948 1.3381 4.6052 9 16 0.8106 -0.0480 4.0033 10 7 1.1986 0.2159 2.5159 11 6 2.3822 2.0296 -1.2623 12 1 2.0496 1.4362 -2.1140 13 6 3.9094 2.2946 -1.3314 14 6 4.0678 3.6113 -0.5424 15 7 2.7623 4.2873 -0.5547 16 6 2.4754 5.4801 0.0538 17 1 1.4808 5.8955 -0.0143 18 6 3.4629 6.1552 0.7581 19 7 4.6751 5.6491 0.8406 20 14 3.0717 7.7826 1.5875 21 1 1.9919 7.5817 2.5869 22 1 4.2875 8.2961 2.2681 23 1 2.6248 8.7638 0.5664 24 6 1.8134 3.4689 -1.3314 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.0042 3.1060 3.8011 31 1 4.4628 1.4880 -0.8506 32 1 4.2322 2.4227 -2.3646 33 1 4.3638 3.3951 0.4841 34 1 4.8165 4.2426 -1.0212 35 1 5.3652 6.1210 1.3324 36 1 1.7743 3.8121 -2.3653 37 1 0.8219 3.5070 -0.8804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033753573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:50 Heat of formation + Delta-G solvation = 122.552276 kcal Electronic energy + Delta-G solvation = -23353.412574 eV Core-core repulsion = 20068.901444 eV Total energy + Delta-G solvation = -3284.511130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.94484 -39.26487 -35.99068 -35.42924 -33.20214 -32.03763 -29.91316 -28.82235 -27.38954 -26.71089 -24.40504 -23.37024 -22.44551 -20.65489 -19.84420 -19.18662 -18.29538 -16.91458 -16.36781 -15.76518 -15.45232 -15.32076 -14.42238 -14.36169 -14.04686 -13.71699 -13.59159 -13.05699 -12.17073 -12.08890 -11.88906 -11.83486 -11.64257 -11.56369 -11.35216 -11.09376 -10.74035 -10.72501 -10.70915 -10.65541 -10.38509 -9.97814 -9.84528 -9.66513 -9.41380 -8.95294 -8.67687 -8.47493 -7.81378 -6.27573 -5.41699 -2.67422 0.63895 1.60549 1.84256 1.94149 3.45358 3.53917 3.58555 3.59054 3.85844 4.68329 4.71732 5.01709 5.27291 5.39678 5.41610 5.50400 5.67147 5.69259 5.72086 5.79748 5.89639 5.92903 6.04554 6.17731 6.31387 6.44483 6.56543 6.60547 6.64917 6.67758 6.78870 7.32623 7.77843 7.92101 7.99256 8.14313 8.54766 9.02274 9.50474 10.12176 10.77970 11.70835 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.006963 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.621275 B = 4020.521324 C = 5213.395721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.111 3.889 3 N -0.597 5.597 4 C 0.536 3.464 5 O -0.379 6.379 6 C 0.037 3.963 7 C 0.089 3.911 8 N -0.575 5.575 9 S 0.640 5.360 10 N -0.537 5.537 11 C 0.136 3.864 12 H 0.084 0.916 13 C -0.161 4.161 14 C 0.191 3.809 15 N -0.567 5.567 16 C -0.199 4.199 17 H 0.067 0.933 18 C -0.004 4.004 19 N -0.918 5.918 20 Si 0.899 3.101 21 H -0.290 1.290 22 H -0.294 1.294 23 H -0.290 1.290 24 C 0.128 3.872 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.214 0.786 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.245 0.755 36 H 0.024 0.976 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.053 -15.452 0.768 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.013 4.013 3 N -0.335 5.335 4 C 0.314 3.686 5 O -0.242 6.242 6 C -0.140 4.140 7 C -0.105 4.105 8 N -0.415 5.415 9 S 0.683 5.317 10 N -0.386 5.386 11 C 0.031 3.969 12 H 0.102 0.898 13 C -0.200 4.200 14 C 0.067 3.933 15 N -0.292 5.292 16 C -0.328 4.328 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.567 5.567 20 Si 0.731 3.269 21 H -0.217 1.217 22 H -0.220 1.220 23 H -0.218 1.218 24 C 0.000 4.000 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.230 0.770 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.440 -16.308 1.908 18.026 hybrid contribution 0.335 2.191 -0.202 2.225 sum -7.105 -14.118 1.706 15.896 Atomic orbital electron populations 1.22067 0.96730 1.00990 1.01477 1.21688 0.94122 0.82861 1.02641 1.47488 1.66960 1.13561 1.05485 1.17280 0.83311 0.86631 0.81398 1.91653 1.35243 1.14656 1.82611 1.23266 1.02685 0.88839 0.99205 1.23919 0.97840 1.02911 0.85861 1.72302 1.21307 1.10428 1.37449 1.78976 1.46104 1.14991 0.91636 1.73230 1.20008 1.20935 1.24435 1.22294 0.95953 0.94589 0.84024 0.89758 1.23400 0.94635 1.01242 1.00742 1.21169 0.87516 0.86957 0.97659 1.44204 1.06023 1.20983 1.58038 1.18750 0.95347 0.93856 1.24811 0.91555 1.24566 0.96009 0.98316 1.01061 1.69939 1.01617 1.38498 1.46627 0.86395 0.76611 0.84423 0.79463 1.21681 1.21971 1.21765 1.21812 0.94107 0.88825 0.95239 0.92844 0.93305 0.92598 0.91709 0.88559 0.76967 0.92385 0.91978 0.91783 0.95235 0.94426 0.95871 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.62 37.16 0.36 -1.48 16 2 C 0.11 1.44 5.68 -4.04 -0.02 1.42 16 3 N -0.60 -9.94 2.57 -164.81 -0.42 -10.36 16 4 C 0.54 10.32 7.12 -12.37 -0.09 10.23 16 5 O -0.38 -9.02 8.70 5.31 0.05 -8.98 16 6 C 0.04 0.60 6.27 -83.71 -0.53 0.08 16 7 C 0.09 1.45 11.22 -17.88 -0.20 1.25 16 8 N -0.57 -8.48 11.41 19.41 0.22 -8.25 16 9 S 0.64 7.37 23.69 -107.50 -2.55 4.83 16 10 N -0.54 -7.36 6.13 23.17 0.14 -7.22 16 11 C 0.14 2.33 3.76 -65.78 -0.25 2.08 16 12 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 13 C -0.16 -3.02 6.54 -24.90 -0.16 -3.19 16 14 C 0.19 4.72 4.20 -3.07 -0.01 4.70 16 15 N -0.57 -14.42 1.76 -170.07 -0.30 -14.72 16 16 C -0.20 -5.62 8.93 -15.05 -0.13 -5.75 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16 19 N -0.92 -27.52 10.31 55.49 0.57 -26.94 16 20 Si 0.90 22.89 29.55 -169.99 -5.02 17.87 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 C 0.13 2.65 6.25 -2.52 -0.02 2.64 16 25 H 0.05 0.73 6.53 -51.93 -0.34 0.39 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.72 7.94 -51.93 -0.41 0.31 16 29 H 0.10 1.28 5.56 -51.93 -0.29 0.99 16 30 H 0.21 3.57 8.06 -52.48 -0.42 3.15 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.78 5.53 -51.93 -0.29 1.50 16 34 H 0.03 0.82 7.50 -51.93 -0.39 0.43 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -32.08 304.56 -8.50 -40.58 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -4.63 Total: -3.17 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: -1.15 Total: 11.77 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: 0.21 Total: -67.50 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.05 Total: -8.98 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Atomic # 16 Polarization: 7.37 SS G_CDS: -2.55 Total: 4.83 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.08 -8.50 -40.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033753573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.133 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds