Wall clock time and date at job start Tue Mar 31 2020 08:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46854 * 2 1 4 4 C 1.34781 * 119.99809 * 84.25585 * 3 2 1 5 5 O 1.21561 * 120.00235 * 174.69203 * 4 3 2 6 6 C 1.47757 * 119.99747 * 354.97087 * 4 3 2 7 7 C 1.39347 * 124.11451 * 184.20504 * 6 4 3 8 8 N 1.30088 * 112.14627 * 179.84682 * 7 6 4 9 9 S 1.55919 * 108.75195 * 0.40189 * 8 7 6 10 10 N 1.31489 * 124.11569 * 4.50141 * 6 4 3 11 11 C 1.46495 * 120.00405 * 264.25313 * 3 2 1 12 12 H 1.09000 * 110.89019 * 11.35349 * 11 3 2 13 13 C 1.55156 * 111.00970 * 247.46770 * 11 3 2 14 14 C 1.54320 * 102.94445 * 277.43367 * 13 11 3 15 15 N 1.47022 * 107.26937 * 337.79854 * 14 13 11 16 16 C 1.36942 * 125.65099 * 178.98934 * 15 14 13 17 17 H 1.07996 * 120.00230 * 179.97438 * 16 15 14 18 18 C 1.38819 * 119.99622 * 359.97438 * 16 15 14 19 19 N 1.31620 * 120.00077 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99705 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46757 * 60.00062 * 20 18 16 22 22 H 1.48493 * 109.47010 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47266 * 300.00305 * 20 18 16 24 24 C 1.47426 * 108.70578 * 358.94804 * 15 14 13 25 25 H 1.09003 * 109.47360 * 299.99305 * 1 2 3 26 26 H 1.08998 * 109.47551 * 60.00029 * 1 2 3 27 27 H 1.09002 * 109.46989 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47360 * 240.00695 * 2 1 3 29 29 H 1.08998 * 109.47551 * 119.99970 * 2 1 3 30 30 H 1.08009 * 123.93129 * 0.03562 * 7 6 4 31 31 H 1.09002 * 110.71533 * 35.78919 * 13 11 3 32 32 H 1.08999 * 110.72442 * 159.06038 * 13 11 3 33 33 H 1.08998 * 109.88728 * 97.21856 * 14 13 11 34 34 H 1.09006 * 109.88295 * 218.39190 * 14 13 11 35 35 H 0.96998 * 119.99806 * 179.97438 * 19 18 16 36 36 H 1.09007 * 110.36547 * 265.29037 * 24 15 14 37 37 H 1.08991 * 110.37224 * 142.96392 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1327 2.0555 1.1614 5 8 2.6277 3.1657 1.1735 6 6 1.6621 1.4427 2.4208 7 6 1.6610 2.0926 3.6535 8 7 1.1948 1.3381 4.6052 9 16 0.8106 -0.0480 4.0033 10 7 1.1986 0.2159 2.5159 11 6 2.3822 2.0296 -1.2623 12 1 2.0496 1.4362 -2.1140 13 6 3.9094 2.2946 -1.3314 14 6 4.0678 3.6113 -0.5424 15 7 2.7623 4.2873 -0.5547 16 6 2.4754 5.4801 0.0538 17 1 1.4808 5.8955 -0.0143 18 6 3.4629 6.1552 0.7581 19 7 4.6751 5.6491 0.8406 20 14 3.0717 7.7826 1.5875 21 1 1.9919 7.5817 2.5869 22 1 4.2875 8.2961 2.2681 23 1 2.6248 8.7638 0.5664 24 6 1.8134 3.4689 -1.3314 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.0042 3.1060 3.8011 31 1 4.4628 1.4880 -0.8506 32 1 4.2322 2.4227 -2.3646 33 1 4.3638 3.3951 0.4841 34 1 4.8165 4.2426 -1.0212 35 1 5.3652 6.1210 1.3324 36 1 1.7743 3.8121 -2.3653 37 1 0.8219 3.5070 -0.8804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033753573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:50 Heat of formation + Delta-G solvation = 101.424762 kcal Electronic energy + Delta-G solvation = -23354.328732 eV Core-core repulsion = 20068.901444 eV Total energy + Delta-G solvation = -3285.427288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.19681 -40.68364 -37.64240 -36.79222 -34.58579 -33.77887 -31.38001 -30.46017 -28.94623 -28.07007 -26.32589 -24.70467 -23.59825 -22.04328 -21.73443 -20.28620 -19.69009 -18.70339 -17.87883 -16.98619 -16.93188 -16.68671 -16.39061 -15.74057 -15.58792 -15.49843 -14.78185 -14.34111 -13.66179 -13.54170 -13.42375 -13.30673 -13.16595 -12.77934 -12.72511 -12.63562 -12.45558 -12.32594 -12.13916 -11.98907 -11.87792 -11.78821 -11.57027 -11.33585 -11.11698 -10.53411 -10.27926 -9.99540 -9.36484 -8.26410 -7.58759 -4.82952 -0.53213 0.46326 0.63799 0.77659 1.46375 1.49011 1.54277 2.18472 2.45996 2.63349 3.47483 3.58936 3.75556 3.89093 4.05067 4.13808 4.26233 4.29297 4.43705 4.52419 4.63126 4.72289 4.82264 4.88478 4.96421 5.07538 5.14984 5.20566 5.23630 5.44691 5.50752 5.59209 5.89513 6.01874 6.13334 6.46942 6.67777 7.37050 7.61536 8.07724 8.71328 9.52340 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.006963 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.621275 B = 4020.521324 C = 5213.395721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.108 3.892 3 N -0.594 5.594 4 C 0.534 3.466 5 O -0.441 6.441 6 C 0.013 3.987 7 C 0.072 3.928 8 N -0.599 5.599 9 S 0.760 5.240 10 N -0.533 5.533 11 C 0.148 3.852 12 H 0.135 0.865 13 C -0.146 4.146 14 C 0.203 3.797 15 N -0.582 5.582 16 C -0.197 4.197 17 H 0.062 0.938 18 C -0.061 4.061 19 N -0.944 5.944 20 Si 0.955 3.045 21 H -0.287 1.287 22 H -0.300 1.300 23 H -0.283 1.283 24 C 0.123 3.877 25 H 0.032 0.968 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.192 0.808 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.026 0.974 34 H -0.017 1.017 35 H 0.234 0.766 36 H 0.037 0.963 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.009 -18.756 0.143 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 N -0.330 5.330 4 C 0.313 3.687 5 O -0.308 6.308 6 C -0.160 4.160 7 C -0.119 4.119 8 N -0.442 5.442 9 S 0.802 5.198 10 N -0.385 5.385 11 C 0.044 3.956 12 H 0.153 0.847 13 C -0.185 4.185 14 C 0.078 3.922 15 N -0.307 5.307 16 C -0.327 4.327 17 H 0.080 0.920 18 C -0.253 4.253 19 N -0.595 5.595 20 Si 0.787 3.213 21 H -0.214 1.214 22 H -0.227 1.227 23 H -0.210 1.210 24 C -0.004 4.004 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.209 0.791 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.001 0.999 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.433 -19.634 1.234 21.818 hybrid contribution 0.770 2.953 0.106 3.054 sum -8.663 -16.681 1.340 18.844 Atomic orbital electron populations 1.22001 0.95723 1.02399 1.00456 1.21951 0.94836 0.80578 1.04114 1.47662 1.65935 1.14847 1.04545 1.17674 0.82075 0.86221 0.82685 1.91639 1.38008 1.17201 1.83920 1.22637 1.05329 0.89896 0.98156 1.23559 0.99192 1.02741 0.86436 1.72054 1.21852 1.12190 1.38134 1.78542 1.41171 1.11417 0.88706 1.72962 1.19329 1.19640 1.26542 1.22291 0.94125 0.93256 0.85900 0.84698 1.23232 0.96395 0.97963 1.00935 1.20813 0.86332 0.88928 0.96112 1.44311 1.07368 1.20796 1.58207 1.18987 0.94847 0.94850 1.23989 0.92017 1.25208 0.96155 1.01382 1.02550 1.70184 1.02196 1.39433 1.47718 0.85483 0.75951 0.81319 0.78580 1.21439 1.22651 1.20980 1.22001 0.92882 0.90745 0.94741 0.94900 0.93323 0.89888 0.88709 0.88632 0.79115 0.91337 0.89759 0.95588 0.99924 0.95667 0.94566 0.95689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.62 71.98 0.69 -2.24 16 2 C 0.11 2.37 5.68 86.38 0.49 2.86 16 3 N -0.59 -18.56 2.57 -793.60 -2.04 -20.60 16 4 C 0.53 20.72 7.12 86.76 0.62 21.34 16 5 O -0.44 -21.97 8.70 -3.91 -0.03 -22.01 16 6 C 0.01 0.41 6.27 41.98 0.26 0.68 16 7 C 0.07 2.41 11.22 85.22 0.96 3.37 16 8 N -0.60 -16.99 11.41 -92.49 -1.06 -18.04 16 9 S 0.76 15.08 23.69 -56.49 -1.34 13.75 16 10 N -0.53 -13.26 6.13 -80.62 -0.49 -13.75 16 11 C 0.15 4.71 3.76 46.39 0.17 4.88 16 12 H 0.14 3.03 7.93 -2.39 -0.02 3.01 16 13 C -0.15 -5.30 6.54 31.78 0.21 -5.09 16 14 C 0.20 10.42 4.20 86.73 0.36 10.79 16 15 N -0.58 -30.53 1.76 -691.97 -1.22 -31.75 16 16 C -0.20 -11.56 8.93 84.03 0.75 -10.81 16 17 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 18 C -0.06 -3.66 5.48 84.86 0.47 -3.19 16 19 N -0.94 -60.04 10.31 21.65 0.22 -59.82 16 20 Si 0.96 49.16 29.55 68.60 2.03 51.18 16 21 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 22 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 23 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 24 C 0.12 5.01 6.25 86.86 0.54 5.55 16 25 H 0.03 0.79 6.53 -2.39 -0.02 0.77 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.09 1.58 7.94 -2.39 -0.02 1.56 16 29 H 0.10 2.17 5.56 -2.39 -0.01 2.15 16 30 H 0.19 7.04 8.06 -2.91 -0.02 7.01 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.03 1.55 5.53 -2.39 -0.01 1.54 16 34 H -0.02 -1.02 7.50 -2.38 -0.02 -1.04 16 35 H 0.23 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -75.50 304.56 2.69 -72.81 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: 1.09 Total: 0.11 kcal Atomic # 6 Polarization: 22.59 SS G_CDS: 5.53 Total: 28.12 kcal Atomic # 7 Polarization: -139.38 SS G_CDS: -4.58 Total: -143.97 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.03 Total: -22.01 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.03 Total: 51.18 kcal Atomic # 16 Polarization: 15.08 SS G_CDS: -1.34 Total: 13.75 kcal Total: -75.50 2.69 -72.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033753573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.235 kcal (2) G-P(sol) polarization free energy of solvation -75.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds