Wall clock time and date at job start Tue Mar 31 2020 08:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47187 * 2 1 4 4 C 1.34778 * 119.99955 * 274.51221 * 3 2 1 5 5 O 1.21572 * 119.99715 * 185.31174 * 4 3 2 6 6 C 1.47747 * 120.00032 * 5.31266 * 4 3 2 7 7 C 1.39353 * 124.11470 * 186.09603 * 6 4 3 8 8 N 1.30088 * 112.14450 * 179.84697 * 7 6 4 9 9 S 1.55921 * 108.75599 * 0.39876 * 8 7 6 10 10 N 1.31488 * 124.11643 * 6.39039 * 6 4 3 11 11 C 1.46503 * 120.00149 * 94.51535 * 3 2 1 12 12 H 1.08999 * 110.91621 * 179.78130 * 11 3 2 13 13 C 1.55162 * 111.00285 * 303.68516 * 11 3 2 14 14 C 1.54328 * 102.94133 * 82.57225 * 13 11 3 15 15 N 1.47022 * 107.27182 * 22.19221 * 14 13 11 16 16 C 1.36937 * 125.64566 * 180.79744 * 15 14 13 17 17 H 1.07996 * 119.99581 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.00121 * 0.02562 * 16 15 14 19 19 N 1.31623 * 119.99672 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99994 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47488 * 60.00122 * 20 18 16 22 22 H 1.48499 * 109.47220 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47155 * 299.99758 * 20 18 16 24 24 C 1.47427 * 108.70358 * 1.05986 * 15 14 13 25 25 H 1.09004 * 109.47163 * 295.30186 * 1 2 3 26 26 H 1.09002 * 109.47199 * 55.29995 * 1 2 3 27 27 H 1.08997 * 109.47636 * 175.29937 * 1 2 3 28 28 H 1.09003 * 109.46761 * 239.99975 * 2 1 3 29 29 H 1.09007 * 109.46905 * 120.00145 * 2 1 3 30 30 H 1.07997 * 123.93007 * 0.02562 * 7 6 4 31 31 H 1.08994 * 110.71689 * 324.20894 * 13 11 3 32 32 H 1.09000 * 110.71925 * 200.93334 * 13 11 3 33 33 H 1.09001 * 109.87868 * 262.77786 * 14 13 11 34 34 H 1.08994 * 110.00954 * 141.68875 * 14 13 11 35 35 H 0.97006 * 119.99429 * 179.97438 * 19 18 16 36 36 H 1.09003 * 110.36750 * 94.71311 * 24 15 14 37 37 H 1.08999 * 110.36453 * 217.03197 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1564 2.0471 -1.1636 5 8 2.6518 3.1573 -1.1735 6 6 1.7057 1.4280 -2.4271 7 6 1.9159 1.9829 -3.6880 8 7 1.4256 1.2416 -4.6379 9 16 0.7607 -0.0161 -3.9999 10 7 1.0524 0.2890 -2.4984 11 6 2.3567 2.0385 1.2648 12 1 2.7063 3.0565 1.0929 13 6 1.1501 2.0221 2.2403 14 6 1.2405 0.6197 2.8782 15 7 2.6292 0.1607 2.7283 16 6 3.1208 -1.0458 3.1503 17 1 4.1610 -1.2897 2.9930 18 6 2.2821 -1.9551 3.7801 19 7 1.0142 -1.6579 3.9712 20 14 2.9529 -3.6005 4.3563 21 1 4.0408 -3.3740 5.3414 22 1 1.8635 -4.3838 4.9926 23 1 3.4875 -4.3520 3.1925 24 6 3.4061 1.2168 2.0543 25 1 -0.3634 0.4392 0.9291 26 1 -0.3634 0.5850 -0.8449 27 1 -0.3634 -1.0241 -0.0842 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.4290 2.9180 -3.8571 31 1 0.2129 2.1386 1.6963 32 1 1.2565 2.7981 2.9983 33 1 0.5661 -0.0654 2.3643 34 1 0.9797 0.6732 3.9351 35 1 0.4281 -2.2935 4.4110 36 1 3.9068 1.8471 2.7893 37 1 4.1337 0.7761 1.3728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033753574.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:54 Heat of formation + Delta-G solvation = 81.316016 kcal Electronic energy + Delta-G solvation = -22817.694660 eV Core-core repulsion = 19531.395392 eV Total energy + Delta-G solvation = -3286.299268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24624 -39.41293 -37.45583 -34.90209 -33.42946 -32.15650 -30.25053 -29.32262 -27.78814 -26.69664 -24.56655 -23.48042 -22.46099 -20.60739 -20.11434 -19.47978 -18.74281 -17.12462 -16.84412 -16.21885 -16.03974 -15.24623 -14.69426 -14.53046 -14.21019 -13.86427 -13.58719 -12.84271 -12.66870 -12.25830 -12.09333 -11.92897 -11.84125 -11.43011 -11.34065 -11.15152 -10.98848 -10.91986 -10.75255 -10.66835 -10.34638 -10.21236 -10.18179 -9.92420 -9.68779 -9.45672 -9.27465 -8.67801 -8.25085 -6.84668 -5.77223 -3.11383 0.39642 1.36370 1.53515 1.57726 3.21650 3.23615 3.36985 3.42370 3.42667 4.40740 4.45066 4.70268 5.10162 5.34097 5.37814 5.42501 5.45350 5.67764 5.73224 5.83857 6.01175 6.08571 6.18525 6.31299 6.34827 6.42359 6.51109 6.55215 6.60818 6.78338 6.89219 7.14328 7.51929 7.57925 7.74108 7.79592 8.19358 8.27762 9.15910 9.75222 10.40381 11.33522 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.005094 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.162754 B = 5494.964527 C = 6194.713131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.088 3.912 3 N -0.560 5.560 4 C 0.594 3.406 5 O -0.542 6.542 6 C 0.017 3.983 7 C 0.087 3.913 8 N -0.581 5.581 9 S 0.682 5.318 10 N -0.516 5.516 11 C 0.123 3.877 12 H 0.102 0.898 13 C -0.157 4.157 14 C 0.166 3.834 15 N -0.602 5.602 16 C -0.233 4.233 17 H 0.077 0.923 18 C -0.003 4.003 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.125 3.875 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.132 0.868 30 H 0.212 0.788 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.253 0.747 36 H 0.033 0.967 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.042 4.444 -13.212 14.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 N -0.289 5.289 4 C 0.376 3.624 5 O -0.420 6.420 6 C -0.158 4.158 7 C -0.107 4.107 8 N -0.421 5.421 9 S 0.724 5.276 10 N -0.365 5.365 11 C 0.019 3.981 12 H 0.120 0.880 13 C -0.196 4.196 14 C 0.042 3.958 15 N -0.329 5.329 16 C -0.361 4.361 17 H 0.095 0.905 18 C -0.200 4.200 19 N -0.566 5.566 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.002 4.002 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.150 0.850 30 H 0.228 0.772 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.865 3.186 -14.017 14.658 hybrid contribution 1.085 0.446 1.106 1.612 sum -1.780 3.632 -12.911 13.530 Atomic orbital electron populations 1.22129 0.96119 1.01564 1.00871 1.22294 0.94785 0.80702 1.05662 1.47762 1.61484 1.14908 1.04756 1.16902 0.79208 0.84611 0.81677 1.90774 1.45786 1.19482 1.85957 1.22619 1.02989 0.92278 0.97874 1.23763 0.99574 1.01824 0.85554 1.72239 1.19599 1.12121 1.38184 1.79213 1.40097 1.20134 0.88120 1.73331 1.18456 1.19053 1.25621 1.22362 0.96919 0.96779 0.82086 0.88002 1.23304 0.97149 1.01227 0.97919 1.21418 0.86680 0.88860 0.98827 1.44590 1.05570 1.14372 1.68335 1.18983 0.94525 0.90459 1.32118 0.90517 1.24765 0.95818 0.98611 1.00798 1.69951 1.03673 1.35446 1.47503 0.86233 0.77599 0.83575 0.78539 1.21222 1.21615 1.21195 1.21907 0.93289 0.91054 0.93925 0.92024 0.93870 0.92335 0.90642 0.84996 0.77204 0.91606 0.91249 0.91997 0.93984 0.93641 0.94928 0.93729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.61 37.16 0.32 -2.17 16 2 C 0.09 1.59 4.70 -4.05 -0.02 1.57 16 3 N -0.56 -9.81 2.53 -164.81 -0.42 -10.22 16 4 C 0.59 9.95 7.64 -12.37 -0.09 9.86 16 5 O -0.54 -9.86 16.20 5.30 0.09 -9.78 16 6 C 0.02 0.25 6.36 -83.71 -0.53 -0.29 16 7 C 0.09 1.07 11.23 -17.88 -0.20 0.87 16 8 N -0.58 -6.88 11.41 19.42 0.22 -6.66 16 9 S 0.68 7.05 23.69 -107.50 -2.55 4.50 16 10 N -0.52 -6.94 5.95 23.18 0.14 -6.80 16 11 C 0.12 2.20 3.66 -65.78 -0.24 1.96 16 12 H 0.10 1.76 7.02 -51.93 -0.36 1.40 16 13 C -0.16 -2.85 5.99 -24.89 -0.15 -3.00 16 14 C 0.17 3.74 4.15 -3.06 -0.01 3.73 16 15 N -0.60 -14.20 1.90 -170.07 -0.32 -14.53 16 16 C -0.23 -6.08 9.91 -15.06 -0.15 -6.23 16 17 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 18 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 19 N -0.92 -25.33 10.31 55.49 0.57 -24.76 16 20 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.13 2.51 6.54 -2.53 -0.02 2.49 16 25 H 0.06 1.11 4.61 -51.93 -0.24 0.87 16 26 H 0.04 0.67 6.45 -51.93 -0.34 0.34 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.31 5.82 -51.93 -0.30 1.01 16 29 H 0.13 2.88 4.37 -51.93 -0.23 2.65 16 30 H 0.21 2.16 8.06 -52.49 -0.42 1.73 16 31 H 0.07 1.14 6.82 -51.93 -0.35 0.79 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.48 4.35 -51.93 -0.23 1.25 16 34 H 0.04 1.07 7.48 -51.93 -0.39 0.69 16 35 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 300.84 15.07 4.53 4.53 Total: -1.00 -28.94 300.84 -8.05 -36.99 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.10 Total: 1.89 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -1.19 Total: 8.61 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.19 Total: -62.96 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 7.05 SS G_CDS: -2.55 Total: 4.50 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.94 -8.05 -36.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033753574.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.305 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds