Wall clock time and date at job start Tue Mar 31 2020 08:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47127 * 2 1 4 4 C 1.34771 * 120.00343 * 83.37995 * 3 2 1 5 5 O 1.21606 * 120.00285 * 185.11742 * 4 3 2 6 6 C 1.47446 * 119.99920 * 4.83829 * 4 3 2 7 7 C 1.37981 * 124.15740 * 174.14377 * 6 4 3 8 8 S 1.72100 * 104.03548 * 179.97438 * 7 6 4 9 9 N 1.56400 * 96.15436 * 0.30259 * 8 7 6 10 10 N 1.27420 * 109.87475 * 359.81649 * 9 8 7 11 11 C 1.46507 * 119.99812 * 263.37708 * 3 2 1 12 12 H 1.08990 * 110.88662 * 10.02016 * 11 3 2 13 13 C 1.55157 * 111.00226 * 246.13769 * 11 3 2 14 14 C 1.54320 * 102.94596 * 277.42685 * 13 11 3 15 15 N 1.47018 * 107.27154 * 337.81104 * 14 13 11 16 16 C 1.36937 * 125.65048 * 178.98715 * 15 14 13 17 17 H 1.08000 * 120.00140 * 179.97438 * 16 15 14 18 18 C 1.38810 * 119.99902 * 359.96687 * 16 15 14 19 19 N 1.31621 * 120.00037 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99980 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47180 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46884 * 120.00721 * 20 18 16 23 23 H 1.48499 * 109.47364 * 240.00600 * 20 18 16 24 24 C 1.47429 * 108.70443 * 358.93758 * 15 14 13 25 25 H 1.08992 * 109.47424 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47123 * 300.00501 * 1 2 3 27 27 H 1.09005 * 109.47113 * 60.00101 * 1 2 3 28 28 H 1.08998 * 109.47322 * 239.99997 * 2 1 3 29 29 H 1.09001 * 109.46661 * 119.99760 * 2 1 3 30 30 H 1.08008 * 127.98384 * 359.97438 * 7 6 4 31 31 H 1.08999 * 110.71870 * 35.79691 * 13 11 3 32 32 H 1.09007 * 110.71472 * 159.06620 * 13 11 3 33 33 H 1.09000 * 109.87953 * 97.22571 * 14 13 11 34 34 H 1.09000 * 109.88592 * 218.39059 * 14 13 11 35 35 H 0.96991 * 119.99949 * 179.97438 * 19 18 16 36 36 H 1.09000 * 110.36860 * 265.29201 * 24 15 14 37 37 H 1.09000 * 110.36577 * 142.96675 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1161 2.0614 1.1593 5 8 2.4321 3.2357 1.1506 6 6 1.8340 1.3835 2.4379 7 6 2.0185 1.9601 3.6778 8 16 1.5361 0.7336 4.7845 9 7 1.1736 -0.3356 3.7022 10 7 1.3774 0.1401 2.5379 11 6 2.4005 2.0230 -1.2603 12 1 2.1009 1.4139 -2.1131 13 6 3.9234 2.3177 -1.2949 14 6 4.0362 3.6460 -0.5174 15 7 2.7183 4.2954 -0.5692 16 6 2.3929 5.4887 0.0184 17 1 1.3923 5.8834 -0.0786 18 6 3.3491 6.1910 0.7390 19 7 4.5687 5.7103 0.8570 20 14 2.9055 7.8192 1.5401 21 1 1.4822 8.1369 1.2603 22 1 3.1112 7.7212 3.0075 23 1 3.7703 8.8936 0.9897 24 6 1.8053 3.4498 -1.3597 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 2.3818 2.9522 3.9021 31 1 4.4806 1.5276 -0.7916 32 1 4.2690 2.4412 -2.3214 33 1 4.3109 3.4469 0.5185 34 1 4.7839 4.2868 -0.9847 35 1 5.2369 6.2012 1.3602 36 1 1.7849 3.7809 -2.3980 37 1 0.8023 3.4730 -0.9334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033913779.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:56 Heat of formation + Delta-G solvation = 132.446090 kcal Electronic energy + Delta-G solvation = -23309.240938 eV Core-core repulsion = 20025.158836 eV Total energy + Delta-G solvation = -3284.082102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.96059 -39.36090 -36.10313 -35.22184 -32.25267 -31.60858 -29.88257 -28.76749 -27.45209 -26.65280 -24.48998 -23.60274 -22.46268 -20.76787 -19.85568 -19.61935 -17.63261 -16.61487 -16.33422 -15.86377 -15.54848 -15.17480 -14.42522 -14.41212 -13.90180 -13.67116 -13.57174 -13.07204 -12.33836 -12.16730 -11.97664 -11.86088 -11.79113 -11.65430 -11.41784 -11.00853 -10.74468 -10.71830 -10.63665 -10.15519 -9.95064 -9.89730 -9.75569 -9.64476 -9.55871 -9.41806 -8.86885 -8.40395 -7.81017 -6.26431 -5.42005 -2.66651 0.24517 1.09387 1.68166 1.83056 3.47410 3.51029 3.56997 3.58704 3.86118 4.12135 4.71408 4.93968 5.09034 5.32627 5.43622 5.49497 5.61799 5.71460 5.72388 5.76964 5.91086 5.97444 6.07622 6.25389 6.32308 6.51475 6.57184 6.65469 6.66941 6.79015 7.33490 7.66217 7.77817 7.89048 8.00976 8.10596 8.54126 9.01435 9.50458 10.12377 10.79036 11.71255 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.007041 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.632327 B = 3975.835182 C = 5226.190184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.597 5.597 4 C 0.541 3.459 5 O -0.384 6.384 6 C -0.008 4.008 7 C -0.230 4.230 8 S 0.423 5.577 9 N -0.306 5.306 10 N -0.210 5.210 11 C 0.134 3.866 12 H 0.085 0.915 13 C -0.161 4.161 14 C 0.190 3.810 15 N -0.567 5.567 16 C -0.186 4.186 17 H 0.067 0.933 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.898 3.102 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.296 1.296 24 C 0.129 3.871 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.207 0.793 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.032 0.968 35 H 0.243 0.757 36 H 0.024 0.976 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.358 -13.382 3.331 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.022 4.022 3 N -0.334 5.334 4 C 0.319 3.681 5 O -0.246 6.246 6 C -0.155 4.155 7 C -0.387 4.387 8 S 0.558 5.442 9 N -0.286 5.286 10 N -0.081 5.081 11 C 0.030 3.970 12 H 0.103 0.897 13 C -0.201 4.201 14 C 0.065 3.935 15 N -0.292 5.292 16 C -0.315 4.315 17 H 0.085 0.915 18 C -0.204 4.204 19 N -0.572 5.572 20 Si 0.731 3.269 21 H -0.210 1.210 22 H -0.224 1.224 23 H -0.223 1.223 24 C 0.002 3.998 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.224 0.776 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.687 -14.103 4.299 15.803 hybrid contribution 0.177 1.906 -0.359 1.948 sum -5.511 -12.197 3.940 13.952 Atomic orbital electron populations 1.22042 0.96528 1.01221 1.01453 1.21857 0.94290 0.82804 1.03298 1.47574 1.66369 1.13701 1.05749 1.17315 0.82001 0.87391 0.81351 1.91735 1.38624 1.10762 1.83525 1.23466 1.03504 0.90516 0.97968 1.28881 1.05450 1.08564 0.95758 1.81343 1.44566 0.98650 1.19660 1.78691 1.23546 1.26242 1.00107 1.71840 1.12999 1.10703 1.12567 1.22328 0.95758 0.94804 0.84141 0.89675 1.23411 0.94691 1.01092 1.00883 1.21103 0.87585 0.87192 0.97574 1.44149 1.06413 1.20579 1.58084 1.18844 0.95454 0.93188 1.24028 0.91481 1.24557 0.96134 0.98410 1.01345 1.69960 1.02423 1.38272 1.46548 0.86220 0.77060 0.84509 0.79107 1.21035 1.22380 1.22349 1.21782 0.94404 0.88694 0.94935 0.92337 0.92958 0.93227 0.91556 0.88034 0.77582 0.92398 0.91823 0.92703 0.95039 0.94640 0.95862 0.94647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.72 37.16 0.36 -1.64 16 2 C 0.10 1.40 5.70 -4.04 -0.02 1.38 16 3 N -0.60 -10.29 2.57 -164.92 -0.42 -10.71 16 4 C 0.54 10.71 7.06 -12.51 -0.09 10.63 16 5 O -0.38 -9.30 8.78 5.27 0.05 -9.25 16 6 C -0.01 -0.14 6.50 -83.78 -0.54 -0.68 16 7 C -0.23 -3.37 11.21 30.64 0.34 -3.03 16 8 S 0.42 4.71 23.38 -107.50 -2.51 2.19 16 9 N -0.31 -4.26 12.49 60.35 0.75 -3.51 16 10 N -0.21 -3.22 6.68 32.74 0.22 -3.01 16 11 C 0.13 2.36 3.77 -65.78 -0.25 2.11 16 12 H 0.09 1.22 7.90 -51.93 -0.41 0.81 16 13 C -0.16 -3.08 6.52 -24.90 -0.16 -3.24 16 14 C 0.19 4.73 4.21 -3.07 -0.01 4.72 16 15 N -0.57 -14.60 1.73 -170.07 -0.29 -14.89 16 16 C -0.19 -5.31 8.74 -15.06 -0.13 -5.44 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -27.73 10.31 55.49 0.57 -27.16 16 20 Si 0.90 22.93 29.55 -169.99 -5.02 17.91 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.30 -7.60 7.11 56.52 0.40 -7.19 16 23 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 24 C 0.13 2.74 6.18 -2.53 -0.02 2.72 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.78 7.11 -51.93 -0.37 0.41 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.78 7.91 -51.93 -0.41 0.37 16 29 H 0.10 1.48 5.18 -51.93 -0.27 1.21 16 30 H 0.21 3.05 8.06 -52.48 -0.42 2.62 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 33 H 0.06 1.54 5.84 -51.93 -0.30 1.23 16 34 H 0.03 0.88 7.50 -51.93 -0.39 0.49 16 35 H 0.24 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 306.42 15.07 4.62 4.62 Total: -1.00 -32.82 306.42 -7.32 -40.14 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -4.66 Total: -3.48 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -0.62 Total: 7.14 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.83 Total: -59.27 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.05 Total: -9.25 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -2.51 Total: 2.19 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.82 -7.32 -40.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033913779.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.590 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds