Wall clock time and date at job start Tue Mar 31 2020 08:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47235 * 2 1 4 4 C 1.34775 * 120.00439 * 275.90342 * 3 2 1 5 5 O 1.21599 * 120.00149 * 184.65213 * 4 3 2 6 6 C 1.47453 * 119.99805 * 4.65368 * 4 3 2 7 7 C 1.37974 * 124.15383 * 175.21885 * 6 4 3 8 8 S 1.72100 * 104.03310 * 179.90262 * 7 6 4 9 9 N 1.56401 * 96.15149 * 0.32811 * 8 7 6 10 10 N 1.27407 * 109.87938 * 359.80088 * 9 8 7 11 11 C 1.46503 * 119.99725 * 95.90777 * 3 2 1 12 12 H 1.09001 * 110.64033 * 341.11653 * 11 3 2 13 13 C 1.55153 * 110.72356 * 104.45373 * 11 3 2 14 14 C 1.54903 * 101.58250 * 82.86074 * 13 11 3 15 15 N 1.47425 * 104.83146 * 37.00856 * 14 13 11 16 16 C 1.36940 * 125.64463 * 156.13479 * 15 14 13 17 17 H 1.08001 * 119.99503 * 179.69253 * 16 15 14 18 18 C 1.38813 * 120.00571 * 359.69480 * 16 15 14 19 19 N 1.31625 * 119.99437 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00268 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47017 * 59.99998 * 20 18 16 22 22 H 1.48500 * 109.47010 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46656 * 299.99871 * 20 18 16 24 24 C 1.47018 * 108.70338 * 335.87307 * 15 14 13 25 25 H 1.09007 * 109.46786 * 299.99811 * 1 2 3 26 26 H 1.09003 * 109.47452 * 59.99229 * 1 2 3 27 27 H 1.08997 * 109.47646 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46541 * 240.00469 * 2 1 3 29 29 H 1.08999 * 109.47144 * 120.00374 * 2 1 3 30 30 H 1.08007 * 127.98446 * 0.02562 * 7 6 4 31 31 H 1.08998 * 111.00299 * 200.93800 * 13 11 3 32 32 H 1.09008 * 111.00217 * 324.78793 * 13 11 3 33 33 H 1.09002 * 110.36931 * 278.17058 * 14 13 11 34 34 H 1.09001 * 110.36697 * 155.85078 * 14 13 11 35 35 H 0.97002 * 119.99389 * 179.97438 * 19 18 16 36 36 H 1.09006 * 109.88103 * 120.47724 * 24 15 14 37 37 H 1.08997 * 109.88050 * 241.63851 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1299 2.0566 -1.1609 5 8 2.6141 3.1720 -1.1714 6 6 1.6645 1.4431 -2.4184 7 6 1.6497 2.0901 -3.6369 8 16 1.0233 0.9142 -4.7263 9 7 0.8298 -0.2147 -3.6612 10 7 1.2027 0.2015 -2.5162 11 6 2.3857 2.0282 1.2621 12 1 1.9406 1.5028 2.1070 13 6 3.9281 2.1067 1.4102 14 6 4.2554 3.3772 0.5866 15 7 3.1374 4.2997 0.8556 16 6 3.1837 5.6637 0.7436 17 1 2.3050 6.2533 0.9595 18 6 4.3599 6.2886 0.3525 19 7 5.4307 5.5699 0.0889 20 14 4.4228 8.1492 0.1991 21 1 4.1092 8.7652 1.5134 22 1 5.7820 8.5647 -0.2313 23 1 3.4270 8.5967 -0.8076 24 6 1.9628 3.5124 1.2580 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.9613 3.1006 -3.8568 31 1 4.2143 2.2334 2.4543 32 1 4.4072 1.2275 0.9793 33 1 4.3032 3.1386 -0.4759 34 1 5.1965 3.8139 0.9209 35 1 6.2525 6.0065 -0.1848 36 1 1.6419 3.8092 2.2565 37 1 1.1524 3.6650 0.5453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033913781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:00 Heat of formation + Delta-G solvation = 117.000893 kcal Electronic energy + Delta-G solvation = -22953.318597 eV Core-core repulsion = 19668.566741 eV Total energy + Delta-G solvation = -3284.751856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.14527 -39.51372 -36.32507 -35.31748 -32.39739 -31.72899 -29.99059 -28.82606 -27.49776 -26.74888 -24.55735 -23.71692 -22.58906 -20.83264 -20.02115 -19.67799 -17.71591 -16.68096 -16.55769 -15.97164 -15.72327 -15.22730 -14.76891 -14.38051 -13.99467 -13.74311 -13.61998 -13.18208 -12.44168 -12.33293 -12.11927 -12.02311 -11.94129 -11.48033 -11.42195 -11.08240 -10.82739 -10.73323 -10.68325 -10.22875 -10.04720 -10.00928 -9.82250 -9.72438 -9.59778 -9.41239 -9.17869 -8.47718 -7.92226 -6.50359 -5.42218 -2.78322 0.09476 0.94782 1.54382 1.63921 3.31128 3.50625 3.54359 3.55813 3.58439 3.95773 4.66154 4.76913 4.91705 5.22636 5.35920 5.42346 5.52796 5.64576 5.67928 5.71935 5.83409 5.90348 6.04704 6.16057 6.39813 6.41283 6.58103 6.66977 6.75436 6.85413 7.22867 7.51309 7.77064 7.82375 7.95293 8.09252 8.58719 8.73884 9.45737 10.07270 10.74705 11.61307 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.005525 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.676029 B = 5066.212217 C = 6059.530298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.104 3.896 3 N -0.593 5.593 4 C 0.560 3.440 5 O -0.431 6.431 6 C -0.010 4.010 7 C -0.233 4.233 8 S 0.432 5.568 9 N -0.303 5.303 10 N -0.206 5.206 11 C 0.136 3.864 12 H 0.086 0.914 13 C -0.160 4.160 14 C 0.158 3.842 15 N -0.577 5.577 16 C -0.202 4.202 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.921 5.921 20 Si 0.908 3.092 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.289 1.289 24 C 0.139 3.861 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.207 0.793 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.095 0.905 35 H 0.247 0.753 36 H 0.023 0.977 37 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.879 -13.134 -6.146 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.019 4.019 3 N -0.329 5.329 4 C 0.341 3.659 5 O -0.299 6.299 6 C -0.156 4.156 7 C -0.390 4.390 8 S 0.568 5.432 9 N -0.282 5.282 10 N -0.077 5.077 11 C 0.033 3.967 12 H 0.104 0.896 13 C -0.200 4.200 14 C 0.033 3.967 15 N -0.301 5.301 16 C -0.331 4.331 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.571 5.571 20 Si 0.740 3.260 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.012 3.988 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.224 0.776 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -9.164 -13.885 -7.022 18.058 hybrid contribution 0.445 1.998 0.685 2.158 sum -8.719 -11.888 -6.337 16.046 Atomic orbital electron populations 1.22061 0.96349 1.01500 1.01393 1.21802 0.94383 0.82347 1.03390 1.47688 1.65570 1.13839 1.05762 1.16885 0.81483 0.86323 0.81228 1.91286 1.37798 1.16536 1.84252 1.23146 1.04378 0.90380 0.97744 1.28870 1.05329 1.08732 0.96108 1.81384 1.43490 0.98032 1.20332 1.78690 1.23220 1.25593 1.00741 1.71865 1.10715 1.12382 1.12759 1.22149 0.96621 0.94366 0.83610 0.89617 1.23548 0.93810 1.01232 1.01397 1.22068 0.93607 0.85223 0.95751 1.44187 1.06202 1.01562 1.78190 1.18937 0.96138 0.80685 1.37309 0.91200 1.24671 0.96218 0.97438 1.02600 1.69827 1.01371 1.32430 1.53456 0.86235 0.76422 0.85714 0.77630 1.21482 1.21816 1.21636 1.21383 0.92165 0.88588 0.96692 0.93138 0.92953 0.92088 0.88324 0.91064 0.77573 0.91547 0.92477 0.94769 0.88736 0.94210 0.95947 0.96226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.61 37.16 0.36 -1.53 16 2 C 0.10 1.39 5.68 -4.04 -0.02 1.36 16 3 N -0.59 -10.01 2.53 -165.28 -0.42 -10.43 16 4 C 0.56 10.66 6.72 -12.51 -0.08 10.58 16 5 O -0.43 -10.21 10.20 5.28 0.05 -10.16 16 6 C -0.01 -0.16 6.32 -83.78 -0.53 -0.69 16 7 C -0.23 -3.05 11.21 30.64 0.34 -2.71 16 8 S 0.43 4.24 23.38 -107.50 -2.51 1.73 16 9 N -0.30 -3.88 12.49 60.35 0.75 -3.12 16 10 N -0.21 -2.95 6.36 32.73 0.21 -2.74 16 11 C 0.14 2.45 3.63 -66.10 -0.24 2.21 16 12 H 0.09 1.28 8.02 -51.93 -0.42 0.86 16 13 C -0.16 -3.17 6.73 -24.59 -0.17 -3.34 16 14 C 0.16 4.04 4.93 -2.53 -0.01 4.03 16 15 N -0.58 -15.39 2.23 -170.08 -0.38 -15.77 16 16 C -0.20 -5.88 10.27 -15.06 -0.15 -6.04 16 17 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 18 C -0.01 -0.43 5.49 -17.43 -0.10 -0.52 16 19 N -0.92 -28.05 10.09 55.49 0.56 -27.49 16 20 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 C 0.14 3.07 5.99 -3.07 -0.02 3.05 16 25 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.05 0.72 6.54 -51.93 -0.34 0.38 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.10 1.36 5.52 -51.93 -0.29 1.07 16 29 H 0.07 0.82 8.01 -51.93 -0.42 0.40 16 30 H 0.21 2.58 8.06 -52.48 -0.42 2.15 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.03 0.97 5.57 -51.93 -0.29 0.68 16 34 H 0.09 2.74 5.87 -51.93 -0.30 2.43 16 35 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.46 7.06 -51.93 -0.37 0.10 16 LS Contribution 306.25 15.07 4.62 4.62 Total: -1.00 -33.78 306.25 -7.27 -41.05 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -4.50 Total: -2.11 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.62 Total: 6.40 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.72 Total: -59.55 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.05 Total: -10.16 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -2.51 Total: 1.73 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.78 -7.27 -41.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033913781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.053 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds