Wall clock time and date at job start Tue Mar 31 2020 07:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.49723 * 2 1 4 4 C 1.53192 * 109.49818 * 239.93902 * 2 1 3 5 5 N 1.46928 * 108.77438 * 185.38719 * 4 2 1 6 6 C 1.34777 * 120.62487 * 233.58343 * 5 4 2 7 7 O 1.21572 * 120.00207 * 7.85957 * 6 5 4 8 8 C 1.47757 * 120.00066 * 187.86278 * 6 5 4 9 9 C 1.39341 * 124.11764 * 187.66601 * 8 6 5 10 10 N 1.30092 * 112.14835 * 180.02562 * 9 8 6 11 11 S 1.55929 * 108.75156 * 0.02562 * 10 9 8 12 12 N 1.31491 * 124.11337 * 7.69020 * 8 6 5 13 13 C 1.46923 * 118.74459 * 53.85321 * 5 4 2 14 14 C 1.53619 * 108.54376 * 306.09999 * 13 5 4 15 15 C 1.53038 * 109.24448 * 54.85186 * 14 13 5 16 16 H 1.08998 * 109.46406 * 178.49208 * 15 14 13 17 17 N 1.46494 * 109.45892 * 58.53216 * 15 14 13 18 18 C 1.36942 * 120.00196 * 84.93375 * 17 15 14 19 19 H 1.08000 * 119.99602 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00258 * 180.02562 * 18 17 15 21 21 N 1.31614 * 119.99979 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99839 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47389 * 60.00072 * 22 20 18 24 24 H 1.48508 * 109.46982 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47503 * 299.99620 * 22 20 18 26 26 H 1.09001 * 109.47254 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47155 * 300.06641 * 1 2 3 28 28 H 1.09002 * 109.46649 * 60.06454 * 1 2 3 29 29 H 1.08997 * 109.59039 * 65.59364 * 4 2 1 30 30 H 1.09007 * 109.58695 * 305.16551 * 4 2 1 31 31 H 1.08001 * 123.93194 * 359.97438 * 9 8 6 32 32 H 1.08997 * 109.58121 * 65.92862 * 13 5 4 33 33 H 1.08994 * 109.58819 * 186.35184 * 13 5 4 34 34 H 1.09005 * 109.63255 * 294.86206 * 14 13 5 35 35 H 1.09001 * 109.46005 * 174.73840 * 14 13 5 36 36 H 0.97004 * 120.00236 * 264.93211 * 17 15 14 37 37 H 0.97003 * 120.00332 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5047 -0.8281 -1.1701 6 6 4.2807 -0.3849 -2.1790 7 8 3.7851 0.2344 -3.1003 8 6 5.7339 -0.6518 -2.1654 9 6 6.6370 -0.1078 -3.0765 10 7 7.8571 -0.4983 -2.8503 11 16 7.8577 -1.4520 -1.6167 12 7 6.3323 -1.4319 -1.2922 13 6 4.1057 -1.4306 0.0275 14 6 3.5715 -0.6943 1.2654 15 6 2.0415 -0.7230 1.2481 16 1 1.6588 -0.2247 2.1388 17 7 1.5796 -2.1131 1.2305 18 6 1.4500 -2.8066 2.4043 19 1 1.6879 -2.3284 3.3430 20 6 1.0129 -4.1239 2.3875 21 7 0.7225 -4.7065 1.2436 22 14 0.8368 -5.0699 3.9886 23 1 -0.1408 -4.3787 4.8670 24 1 0.3567 -6.4454 3.7006 25 1 2.1540 -5.1377 4.6710 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5148 0.8894 28 1 -0.3633 0.5129 -0.8906 29 1 1.7633 -0.1575 -2.1390 30 1 1.6057 -1.7214 -1.2983 31 1 6.3566 0.5597 -3.8779 32 1 3.8350 -2.4851 0.0811 33 1 5.1902 -1.3316 -0.0186 34 1 3.9161 0.3398 1.2535 35 1 3.9345 -1.1884 2.1666 36 1 1.3656 -2.5425 0.3874 37 1 0.4174 -5.6272 1.2318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035926922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:02 Heat of formation + Delta-G solvation = 51.677633 kcal Electronic energy + Delta-G solvation = -22300.085964 eV Core-core repulsion = 19012.501478 eV Total energy + Delta-G solvation = -3287.584485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32853 -39.47819 -37.61277 -34.63386 -33.60146 -32.61326 -31.38346 -29.17363 -27.87985 -26.22273 -24.96119 -23.50131 -22.57105 -21.66967 -19.97194 -19.56289 -18.40731 -17.32321 -16.77196 -16.25503 -15.93859 -15.37433 -14.92984 -14.41273 -14.34884 -13.99954 -13.56601 -13.29398 -13.01607 -12.58108 -12.52513 -12.19243 -11.79905 -11.46597 -11.45001 -11.31498 -11.22495 -10.95192 -10.83531 -10.77217 -10.49310 -10.24829 -10.21663 -9.84197 -9.61683 -9.51641 -9.35235 -8.89295 -8.26859 -6.97187 -5.78941 -3.07163 0.28292 1.26619 1.45301 1.47961 3.11085 3.15566 3.41807 3.47047 3.47597 4.31728 4.57410 4.58813 4.99469 5.23171 5.30633 5.32822 5.39683 5.62084 5.64673 5.81123 5.87007 5.92824 6.05022 6.12950 6.24179 6.27647 6.40409 6.45644 6.51444 6.62559 6.74890 6.78096 6.94996 6.99849 7.59197 7.68132 8.15235 8.39657 9.51163 10.07969 10.43085 11.43537 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.004766 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.369650 B = 5873.325319 C = 6889.367719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.118 3.882 5 N -0.576 5.576 6 C 0.596 3.404 7 O -0.539 6.539 8 C 0.020 3.980 9 C 0.087 3.913 10 N -0.577 5.577 11 S 0.689 5.311 12 N -0.526 5.526 13 C 0.093 3.907 14 C -0.149 4.149 15 C 0.177 3.823 16 H 0.050 0.950 17 N -0.718 5.718 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.933 5.933 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.213 0.787 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.383 0.617 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.378 9.045 -5.773 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.085 0.915 4 C -0.004 4.004 5 N -0.306 5.306 6 C 0.378 3.622 7 O -0.417 6.417 8 C -0.154 4.154 9 C -0.107 4.107 10 N -0.418 5.418 11 S 0.733 5.267 12 N -0.375 5.375 13 C -0.031 4.031 14 C -0.190 4.190 15 C 0.067 3.933 16 H 0.068 0.932 17 N -0.360 5.360 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.214 1.214 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.229 0.771 32 H 0.102 0.898 33 H 0.134 0.866 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.219 0.781 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.735 8.276 -5.176 16.046 hybrid contribution -1.500 0.012 -0.054 1.501 sum 11.235 8.288 -5.230 14.909 Atomic orbital electron populations 1.21666 0.94093 1.03234 1.00499 1.21703 0.96570 0.98882 0.95607 0.91512 1.21788 0.77634 1.01923 0.99009 1.47979 1.07114 1.57697 1.17828 1.16840 0.82620 0.79775 0.82966 1.90787 1.73197 1.41389 1.36289 1.22657 0.98633 0.99487 0.94658 1.23760 0.84959 1.00898 1.01065 1.72249 1.27553 1.19528 1.22482 1.79269 1.04113 1.30508 1.12787 1.73055 1.13331 1.23160 1.27947 1.22682 0.99626 0.98467 0.82338 1.22617 1.00218 0.98443 0.97737 1.20240 0.90955 0.87356 0.94778 0.93158 1.42454 1.78985 1.07681 1.06916 1.19171 1.37234 0.93871 0.86556 0.91334 1.24688 1.02293 0.97155 0.96565 1.69634 1.51722 1.13077 1.23717 0.86315 0.77734 0.79227 0.83161 1.21380 1.21815 1.21386 0.91005 0.92752 0.93699 0.89490 0.90183 0.77063 0.89762 0.86609 0.93624 0.90796 0.78136 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.06 37.16 0.34 -1.82 16 2 C -0.11 -1.75 2.67 -90.50 -0.24 -1.99 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.98 5.43 -3.71 -0.02 1.96 16 5 N -0.58 -9.53 2.97 -173.65 -0.52 -10.05 16 6 C 0.60 9.56 7.67 -12.37 -0.09 9.47 16 7 O -0.54 -9.46 16.25 5.30 0.09 -9.37 16 8 C 0.02 0.28 6.57 -83.71 -0.55 -0.27 16 9 C 0.09 1.01 11.23 -17.88 -0.20 0.81 16 10 N -0.58 -6.52 11.41 19.42 0.22 -6.30 16 11 S 0.69 6.78 23.69 -107.50 -2.55 4.24 16 12 N -0.53 -6.85 7.72 23.17 0.18 -6.68 16 13 C 0.09 1.57 5.80 -3.49 -0.02 1.55 16 14 C -0.15 -2.53 5.79 -26.39 -0.15 -2.68 16 15 C 0.18 3.31 2.53 -67.89 -0.17 3.13 16 16 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 17 N -0.72 -16.46 3.64 -53.39 -0.19 -16.66 16 18 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 19 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -27.05 13.06 55.49 0.72 -26.32 16 22 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H 0.07 1.31 7.54 -51.93 -0.39 0.92 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.40 7.00 -51.93 -0.36 1.04 16 30 H 0.08 1.47 6.64 -51.93 -0.34 1.13 16 31 H 0.21 2.02 8.06 -52.49 -0.42 1.60 16 32 H 0.08 1.68 7.73 -51.93 -0.40 1.28 16 33 H 0.12 1.81 4.14 -67.09 -0.28 1.53 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.38 9.42 5.93 -40.82 -0.24 9.18 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -29.77 313.73 -8.22 -38.00 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.52 Total: 8.28 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.36 Total: 3.43 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: 0.42 Total: -66.00 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 6.78 SS G_CDS: -2.55 Total: 4.24 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.77 -8.22 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035926922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.675 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds