Wall clock time and date at job start Tue Mar 31 2020 07:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.49417 * 2 1 4 4 C 1.53189 * 109.49969 * 120.06434 * 2 1 3 5 5 N 1.46930 * 108.77594 * 174.58243 * 4 2 1 6 6 C 1.34775 * 120.62789 * 126.36856 * 5 4 2 7 7 O 1.21565 * 120.00099 * 352.22953 * 6 5 4 8 8 C 1.47751 * 120.00215 * 172.22927 * 6 5 4 9 9 C 1.39342 * 124.12032 * 172.24810 * 8 6 5 10 10 N 1.30093 * 112.15058 * 179.97438 * 9 8 6 11 11 S 1.55924 * 108.75035 * 0.02562 * 10 9 8 12 12 N 1.31494 * 124.11411 * 351.94548 * 8 6 5 13 13 C 1.46921 * 118.74118 * 306.39637 * 5 4 2 14 14 C 1.53191 * 108.77529 * 53.60572 * 13 5 4 15 15 C 1.53036 * 109.49575 * 239.90215 * 2 1 3 16 16 H 1.09005 * 109.45983 * 58.67814 * 15 2 1 17 17 N 1.46495 * 109.46509 * 298.70453 * 15 2 1 18 18 C 1.36939 * 120.00364 * 155.00225 * 17 15 2 19 19 H 1.07997 * 119.99870 * 359.97438 * 18 17 15 20 20 C 1.38817 * 120.00044 * 180.02562 * 18 17 15 21 21 N 1.31612 * 119.99982 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99680 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47350 * 90.00361 * 22 20 18 24 24 H 1.48507 * 109.46718 * 209.99958 * 22 20 18 25 25 H 1.48497 * 109.47495 * 330.00084 * 22 20 18 26 26 H 1.09002 * 109.47192 * 299.93071 * 1 2 3 27 27 H 1.08997 * 109.47669 * 59.93443 * 1 2 3 28 28 H 1.09005 * 109.47408 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.58632 * 54.80426 * 4 2 1 30 30 H 1.09000 * 109.70608 * 294.44641 * 4 2 1 31 31 H 1.08003 * 123.93213 * 359.94144 * 9 8 6 32 32 H 1.09000 * 109.58934 * 173.39063 * 13 5 4 33 33 H 1.08994 * 109.58544 * 293.81848 * 13 5 4 34 34 H 1.08993 * 109.49896 * 65.31775 * 14 13 5 35 35 H 1.09006 * 109.49837 * 185.41303 * 14 13 5 36 36 H 0.97007 * 119.99536 * 334.99529 * 17 15 2 37 37 H 0.96997 * 119.99827 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5046 -0.8288 1.1697 6 6 4.2812 -0.3850 2.1779 7 8 3.7859 0.2340 3.0995 8 6 5.7346 -0.6507 2.1630 9 6 6.6383 -0.1046 3.0723 10 7 7.8585 -0.4945 2.8453 11 16 7.8586 -1.4490 1.6123 12 7 6.3319 -1.4357 1.2935 13 6 4.1053 -1.4267 -0.0305 14 6 3.5708 -0.6953 -1.2659 15 6 2.0407 -0.7234 -1.2481 16 1 1.6582 -0.2249 -2.1388 17 7 1.5783 -2.1134 -1.2303 18 6 1.4481 -2.8069 -2.4039 19 1 1.6860 -2.3290 -3.3427 20 6 1.0094 -4.1238 -2.3869 21 7 0.8838 -4.7901 -3.5149 22 14 0.5973 -4.9500 -0.7631 23 1 -0.8364 -4.7293 -0.4451 24 1 0.8623 -6.4075 -0.8681 25 1 1.4383 -4.3704 0.3148 26 1 -0.3634 0.5128 0.8906 27 1 -0.3634 0.5148 -0.8893 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6053 -1.7213 1.2984 30 1 1.7637 -0.1595 2.1403 31 1 6.3585 0.5649 3.8722 32 1 5.1896 -1.3245 0.0139 33 1 3.8375 -2.4818 -0.0862 34 1 3.9158 0.3385 -1.2542 35 1 3.9333 -1.1902 -2.1669 36 1 1.3643 -2.5425 -0.3870 37 1 0.5776 -5.7104 -3.5030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035926923.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:07 Heat of formation + Delta-G solvation = 55.619704 kcal Electronic energy + Delta-G solvation = -22408.161885 eV Core-core repulsion = 19120.748340 eV Total energy + Delta-G solvation = -3287.413544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42540 -39.62919 -37.78406 -34.77513 -33.69917 -32.70370 -31.53288 -29.78056 -27.99501 -26.38845 -25.17733 -23.22154 -22.66765 -21.72416 -20.07931 -19.65967 -18.51186 -17.85579 -16.87363 -16.34854 -16.05985 -15.49165 -15.03636 -14.65003 -14.41310 -14.00364 -13.64586 -13.52910 -13.11884 -12.69747 -12.59670 -12.30317 -11.97152 -11.61364 -11.55890 -11.54164 -11.39961 -11.08350 -10.95149 -10.92800 -10.61044 -10.35517 -10.24119 -9.87617 -9.71937 -9.56428 -9.43207 -8.94390 -8.42882 -7.29407 -5.80436 -3.15453 0.20197 1.18720 1.36816 1.40363 2.97388 3.03909 3.32591 3.35267 3.42064 4.22089 4.48296 4.54915 4.91060 5.06837 5.12016 5.23475 5.27627 5.36252 5.56440 5.63084 5.71367 5.73926 5.87634 5.95740 6.08450 6.15707 6.25137 6.34694 6.35551 6.48527 6.59323 6.66089 6.74704 6.86898 7.44333 7.96061 8.02164 8.38696 9.16922 9.89623 10.09462 11.38077 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.005132 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.941265 B = 5454.427067 C = 6165.765173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.073 0.927 4 C 0.117 3.883 5 N -0.580 5.580 6 C 0.598 3.402 7 O -0.537 6.537 8 C 0.018 3.982 9 C 0.088 3.912 10 N -0.577 5.577 11 S 0.696 5.304 12 N -0.528 5.528 13 C 0.092 3.908 14 C -0.149 4.149 15 C 0.183 3.817 16 H 0.061 0.939 17 N -0.743 5.743 18 C -0.240 4.240 19 H 0.091 0.909 20 C 0.007 3.993 21 N -0.933 5.933 22 Si 0.878 3.122 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.279 1.279 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.213 0.787 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.360 0.640 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.272 9.670 10.823 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.091 0.909 4 C -0.005 4.005 5 N -0.310 5.310 6 C 0.380 3.620 7 O -0.414 6.414 8 C -0.156 4.156 9 C -0.106 4.106 10 N -0.418 5.418 11 S 0.740 5.260 12 N -0.377 5.377 13 C -0.032 4.032 14 C -0.190 4.190 15 C 0.073 3.927 16 H 0.078 0.922 17 N -0.387 5.387 18 C -0.369 4.369 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.581 5.581 22 Si 0.708 3.292 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.205 1.205 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.230 0.770 32 H 0.136 0.864 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.194 0.806 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.638 8.896 10.151 18.491 hybrid contribution -1.657 -0.032 1.791 2.440 sum 10.981 8.865 11.942 18.487 Atomic orbital electron populations 1.21676 0.94034 1.02833 1.01041 1.21755 0.96614 0.99354 0.95392 0.90871 1.21775 0.77900 1.01393 0.99418 1.47989 1.06985 1.58162 1.17909 1.16834 0.82676 0.79610 0.82863 1.90790 1.73244 1.41177 1.36195 1.22613 0.98551 0.99533 0.94941 1.23755 0.84962 1.00861 1.01017 1.72250 1.27548 1.19624 1.22372 1.79289 1.03718 1.30236 1.12786 1.73016 1.13532 1.23167 1.28023 1.22598 0.99959 0.98215 0.82438 1.22523 0.99756 0.98868 0.97866 1.20210 0.91118 0.86159 0.95174 0.92152 1.42830 1.80653 1.09380 1.05810 1.19054 1.37414 0.94201 0.86276 0.89160 1.24622 1.01581 0.96685 0.95965 1.69684 1.53158 1.10848 1.24424 0.86671 0.78451 0.79302 0.84749 1.21038 1.21781 1.20541 0.93432 0.92203 0.91682 0.91103 0.89144 0.77041 0.86361 0.90283 0.93217 0.90195 0.80648 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.05 37.16 0.34 -1.66 16 2 C -0.11 -1.68 2.67 -90.51 -0.24 -1.92 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.82 5.43 -3.71 -0.02 1.80 16 5 N -0.58 -9.09 2.97 -173.92 -0.52 -9.61 16 6 C 0.60 9.09 7.67 -12.37 -0.09 9.00 16 7 O -0.54 -8.95 16.25 5.31 0.09 -8.86 16 8 C 0.02 0.24 6.56 -83.71 -0.55 -0.31 16 9 C 0.09 0.97 11.23 -17.88 -0.20 0.76 16 10 N -0.58 -6.21 11.41 19.42 0.22 -5.99 16 11 S 0.70 6.48 23.69 -107.50 -2.55 3.94 16 12 N -0.53 -6.54 7.74 23.18 0.18 -6.37 16 13 C 0.09 1.47 5.76 -3.71 -0.02 1.45 16 14 C -0.15 -2.43 5.78 -26.61 -0.15 -2.58 16 15 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 16 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 17 N -0.74 -16.13 3.44 -53.39 -0.18 -16.31 16 18 C -0.24 -6.33 10.41 -15.06 -0.16 -6.49 16 19 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 21 N -0.93 -28.48 13.97 55.49 0.78 -27.70 16 22 Si 0.88 21.54 27.73 -169.99 -4.71 16.82 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 1.07 7.53 -51.93 -0.39 0.68 16 29 H 0.07 1.19 6.64 -51.93 -0.34 0.84 16 30 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 31 H 0.21 1.90 8.06 -52.48 -0.42 1.48 16 32 H 0.12 1.75 4.16 -65.80 -0.27 1.48 16 33 H 0.08 1.47 7.74 -51.93 -0.40 1.07 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.36 7.85 3.79 -40.82 -0.15 7.70 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 310.60 15.07 4.68 4.68 Total: -1.00 -31.06 310.60 -7.87 -38.93 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.48 Total: 7.23 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.37 Total: 3.24 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: 0.48 Total: -65.98 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.82 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -2.55 Total: 3.94 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.06 -7.87 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035926923.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.549 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds