Wall clock time and date at job start Tue Mar 31 2020 07:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.52623 * 2 1 4 4 C 1.53193 * 109.49511 * 120.08317 * 2 1 3 5 5 N 1.46929 * 108.77195 * 174.58298 * 4 2 1 6 6 C 1.34777 * 120.62725 * 126.41375 * 5 4 2 7 7 O 1.21561 * 120.00209 * 352.20712 * 6 5 4 8 8 C 1.47757 * 119.99589 * 172.20549 * 6 5 4 9 9 C 1.39352 * 124.11210 * 172.30945 * 8 6 5 10 10 N 1.30095 * 112.14222 * 179.84789 * 9 8 6 11 11 S 1.55920 * 108.75384 * 0.39964 * 10 9 8 12 12 N 1.31488 * 124.12038 * 352.60901 * 8 6 5 13 13 C 1.46922 * 118.73995 * 306.38969 * 5 4 2 14 14 C 1.53193 * 108.77614 * 53.61304 * 13 5 4 15 15 C 1.53045 * 109.30819 * 305.35969 * 14 13 5 16 16 H 1.08994 * 109.46520 * 301.35667 * 15 14 13 17 17 N 1.46504 * 109.45655 * 181.38457 * 15 14 13 18 18 C 1.36937 * 119.99718 * 85.00511 * 17 15 14 19 19 H 1.08001 * 120.00247 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99832 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99588 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99923 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.46740 * 269.99895 * 22 20 18 24 24 H 1.48497 * 109.47366 * 30.00073 * 22 20 18 25 25 H 1.48500 * 109.47028 * 150.00419 * 22 20 18 26 26 H 1.08996 * 109.47808 * 180.08177 * 1 2 3 27 27 H 1.08999 * 109.47017 * 300.08514 * 1 2 3 28 28 H 1.09002 * 109.47126 * 60.07798 * 1 2 3 29 29 H 1.09000 * 109.58686 * 54.80231 * 4 2 1 30 30 H 1.08995 * 109.58473 * 294.37068 * 4 2 1 31 31 H 1.08000 * 123.93010 * 0.02562 * 9 8 6 32 32 H 1.08997 * 109.58917 * 293.82614 * 13 5 4 33 33 H 1.09003 * 109.70708 * 173.46826 * 13 5 4 34 34 H 1.09007 * 109.49698 * 185.41473 * 14 13 5 35 35 H 1.08995 * 109.50078 * 65.31329 * 14 13 5 36 36 H 0.96995 * 120.00113 * 264.99792 * 17 15 14 37 37 H 0.97009 * 119.99531 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7239 1.2496 5 7 3.5045 -0.8293 1.1695 6 6 4.2810 -0.3866 2.1782 7 8 3.7858 0.2317 3.1003 8 6 5.7344 -0.6528 2.1633 9 6 6.6379 -0.1088 3.0741 10 7 7.8577 -0.5008 2.8483 11 16 7.8589 -1.4471 1.6091 12 7 6.3333 -1.4274 1.2857 13 6 4.1051 -1.4268 -0.0308 14 6 3.5708 -0.6951 -1.2661 15 6 2.0407 -0.7232 -1.2484 16 1 1.6966 -1.7573 -1.2352 17 7 1.5265 -0.0529 -2.4453 18 6 1.3950 -0.7496 -3.6169 19 1 1.6700 -1.7932 -3.6585 20 6 0.9072 -0.1147 -4.7509 21 7 0.7804 -0.7844 -5.8768 22 14 0.4309 1.6902 -4.6789 23 1 -0.9998 1.8096 -4.2995 24 1 1.2703 2.3838 -3.6692 25 1 0.6434 2.3117 -6.0107 26 1 -0.3634 -1.0276 0.0015 27 1 -0.3633 0.5151 0.8892 28 1 -0.3633 0.5126 -0.8907 29 1 1.6052 -1.7217 1.2979 30 1 1.7637 -0.1580 2.1388 31 1 6.3578 0.5582 3.8760 32 1 3.8373 -2.4819 -0.0869 33 1 5.1897 -1.3270 0.0123 34 1 3.9333 -1.1898 -2.1672 35 1 3.9159 0.3387 -1.2541 36 1 1.2790 0.8842 -2.4079 37 1 0.4392 -0.3408 -6.6692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035926924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:10 Heat of formation + Delta-G solvation = 53.012863 kcal Electronic energy + Delta-G solvation = -21948.145630 eV Core-core repulsion = 18660.619045 eV Total energy + Delta-G solvation = -3287.526585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49981 -39.63059 -37.74073 -35.01579 -33.89825 -32.69565 -31.57970 -29.89558 -28.02868 -26.46807 -25.16270 -23.11071 -22.32005 -21.56303 -20.26955 -19.76173 -19.39416 -17.58598 -17.01429 -16.42044 -16.14899 -15.57349 -15.03579 -14.78365 -14.39098 -13.95175 -13.81101 -13.36055 -13.12283 -12.73776 -12.54011 -12.42529 -12.10094 -11.80135 -11.61413 -11.50467 -11.47672 -11.10349 -10.98284 -10.84466 -10.63784 -10.45431 -10.28256 -9.89062 -9.76127 -9.59718 -9.50371 -8.91992 -8.60980 -7.28561 -5.79898 -3.15094 0.12086 1.10745 1.29467 1.33179 2.84755 2.96239 3.35120 3.38332 3.43466 4.13051 4.39226 4.56496 4.82671 5.01726 5.04048 5.17721 5.22154 5.31937 5.49558 5.59274 5.62235 5.69878 5.89136 5.92628 6.07240 6.12538 6.14531 6.25933 6.30406 6.39409 6.50141 6.66137 6.77125 6.93741 7.30713 7.92113 7.96080 8.39319 9.17682 9.90514 10.10566 11.38470 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.004060 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.667669 B = 6894.591129 C = 7605.545913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.070 0.930 4 C 0.121 3.879 5 N -0.583 5.583 6 C 0.600 3.400 7 O -0.533 6.533 8 C 0.018 3.982 9 C 0.088 3.912 10 N -0.576 5.576 11 S 0.699 5.301 12 N -0.532 5.532 13 C 0.085 3.915 14 C -0.150 4.150 15 C 0.187 3.813 16 H 0.058 0.942 17 N -0.745 5.745 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.881 3.119 23 H -0.284 1.284 24 H -0.278 1.278 25 H -0.292 1.292 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.214 0.786 32 H 0.068 0.932 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.361 0.639 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.609 -1.358 17.528 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.314 5.314 6 C 0.382 3.618 7 O -0.410 6.410 8 C -0.157 4.157 9 C -0.105 4.105 10 N -0.417 5.417 11 S 0.743 5.257 12 N -0.381 5.381 13 C -0.039 4.039 14 C -0.192 4.192 15 C 0.077 3.923 16 H 0.076 0.924 17 N -0.387 5.387 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.582 5.582 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.204 1.204 25 H -0.218 1.218 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.230 0.770 32 H 0.086 0.914 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.193 0.807 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.973 -2.217 16.904 21.423 hybrid contribution -1.666 2.163 0.511 2.778 sum 11.308 -0.053 17.415 20.764 Atomic orbital electron populations 1.21667 0.93974 1.02218 1.01629 1.21793 0.96659 1.00112 0.94832 0.91197 1.21812 0.77581 1.01281 0.99479 1.47987 1.07090 1.58612 1.17724 1.16832 0.82671 0.79471 0.82827 1.90803 1.73213 1.40781 1.36181 1.22601 0.98503 0.99810 0.94743 1.23772 0.84931 1.00687 1.01119 1.72253 1.27546 1.19543 1.22343 1.79282 1.03656 1.30579 1.12219 1.72944 1.13667 1.23600 1.27915 1.22731 1.01040 0.97033 0.83137 1.22658 0.99632 1.00314 0.96564 1.20211 0.90674 0.96022 0.85351 0.92440 1.42778 1.78241 1.10040 1.07662 1.19059 1.36279 0.95695 0.86139 0.89192 1.24648 1.01365 0.97353 0.95611 1.69699 1.52093 1.35682 1.00687 0.86598 0.78594 0.86823 0.76793 1.21040 1.20409 1.21802 0.92482 0.93453 0.91413 0.90866 0.88972 0.76996 0.91358 0.85858 0.90058 0.92596 0.80650 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.03 37.16 0.34 -1.67 16 2 C -0.11 -1.73 2.46 -90.50 -0.22 -1.96 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.12 1.62 5.73 -3.71 -0.02 1.60 16 5 N -0.58 -8.01 2.97 -173.92 -0.52 -8.53 16 6 C 0.60 8.29 7.67 -12.37 -0.09 8.20 16 7 O -0.53 -8.32 16.25 5.31 0.09 -8.23 16 8 C 0.02 0.21 6.57 -83.71 -0.55 -0.34 16 9 C 0.09 0.90 11.23 -17.87 -0.20 0.70 16 10 N -0.58 -5.72 11.41 19.43 0.22 -5.50 16 11 S 0.70 5.72 23.69 -107.50 -2.55 3.17 16 12 N -0.53 -5.76 7.72 23.17 0.18 -5.58 16 13 C 0.09 1.16 6.02 -3.71 -0.02 1.14 16 14 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 15 C 0.19 3.38 2.19 -67.88 -0.15 3.23 16 16 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 17 N -0.75 -16.77 4.21 -53.38 -0.22 -16.99 16 18 C -0.24 -6.54 10.41 -15.06 -0.16 -6.70 16 19 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -28.78 13.97 55.49 0.78 -28.01 16 22 Si 0.88 21.77 27.74 -169.99 -4.71 17.06 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.14 7.36 -51.93 -0.38 0.75 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.23 7.00 -51.93 -0.36 0.86 16 31 H 0.21 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.12 1.60 4.15 -66.88 -0.28 1.32 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.36 8.14 5.37 -40.82 -0.22 7.92 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -31.82 314.53 -7.96 -39.79 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -4.63 Total: 6.46 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.33 Total: 1.63 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: 0.43 Total: -64.61 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -2.55 Total: 3.17 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.82 -7.96 -39.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035926924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.802 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds