Wall clock time and date at job start Tue Mar 31 2020 07:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.51789 * 2 1 4 4 C 1.53189 * 109.49930 * 239.91704 * 2 1 3 5 5 N 1.46931 * 108.89182 * 185.48409 * 4 2 1 6 6 C 1.34779 * 120.62641 * 233.55799 * 5 4 2 7 7 O 1.21561 * 120.00318 * 353.57282 * 6 5 4 8 8 C 1.47756 * 119.99626 * 173.56242 * 6 5 4 9 9 C 1.39350 * 124.11343 * 172.51223 * 8 6 5 10 10 N 1.30099 * 112.14314 * 179.97438 * 9 8 6 11 11 S 1.55920 * 108.75216 * 359.97438 * 10 9 8 12 12 N 1.31489 * 124.11607 * 352.21812 * 8 6 5 13 13 C 1.46924 * 118.73930 * 53.53513 * 5 4 2 14 14 C 1.53190 * 108.77648 * 306.39479 * 13 5 4 15 15 C 1.53032 * 109.31563 * 54.63204 * 14 13 5 16 16 H 1.09005 * 109.46082 * 58.65833 * 15 14 13 17 17 N 1.46502 * 109.46145 * 178.62600 * 15 14 13 18 18 C 1.36933 * 120.00408 * 275.00252 * 17 15 14 19 19 H 1.08003 * 119.99579 * 0.02562 * 18 17 15 20 20 C 1.38813 * 120.00219 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99875 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99941 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47097 * 89.99908 * 22 20 18 24 24 H 1.48501 * 109.46705 * 210.00144 * 22 20 18 25 25 H 1.48500 * 109.46907 * 330.00212 * 22 20 18 26 26 H 1.09005 * 109.46840 * 180.08365 * 1 2 3 27 27 H 1.09006 * 109.47400 * 300.08112 * 1 2 3 28 28 H 1.08995 * 109.47452 * 60.08456 * 1 2 3 29 29 H 1.09002 * 109.58309 * 65.62799 * 4 2 1 30 30 H 1.09000 * 109.58464 * 305.34156 * 4 2 1 31 31 H 1.07995 * 123.93118 * 359.97438 * 9 8 6 32 32 H 1.09001 * 109.58552 * 66.18177 * 13 5 4 33 33 H 1.08999 * 109.58221 * 186.60517 * 13 5 4 34 34 H 1.08998 * 109.49607 * 174.58767 * 14 13 5 35 35 H 1.09000 * 109.49653 * 294.68250 * 14 13 5 36 36 H 0.97004 * 119.99770 * 95.00454 * 17 15 14 37 37 H 0.96994 * 120.00240 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5045 -0.8320 -1.1713 6 6 4.2806 -0.3908 -2.1810 7 8 3.7714 -0.0058 -3.2155 8 6 5.7504 -0.3747 -2.0303 9 6 6.6387 -0.0805 -3.0628 10 7 7.8787 -0.1330 -2.6728 11 16 7.9130 -0.5133 -1.1611 12 7 6.3791 -0.6309 -0.9042 13 6 4.1055 -1.4299 0.0287 14 6 3.5741 -0.6964 1.2641 15 6 2.0441 -0.7214 1.2484 16 1 1.6978 -1.7549 1.2366 17 7 1.5326 -0.0491 2.4454 18 6 1.4013 -0.7444 3.6178 19 1 1.6752 -1.7883 3.6601 20 6 0.9172 -0.1073 4.7521 21 7 0.7905 -0.7757 5.8788 22 14 0.4442 1.6984 4.6791 23 1 -0.9870 1.8203 4.3026 24 1 0.6610 2.3210 6.0097 25 1 1.2829 2.3891 3.6668 26 1 -0.3633 -1.0277 0.0015 27 1 -0.3634 0.5151 0.8893 28 1 -0.3634 0.5125 -0.8907 29 1 1.7638 -0.1579 -2.1388 30 1 1.6033 -1.7207 -1.2992 31 1 6.3334 0.1628 -4.0698 32 1 3.8358 -2.4845 0.0857 33 1 5.1899 -1.3300 -0.0173 34 1 3.9369 -1.1912 2.1650 35 1 3.9212 0.3368 1.2510 36 1 1.2870 0.8885 2.4075 37 1 0.4526 -0.3305 6.6715 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035926925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:13 Heat of formation + Delta-G solvation = 54.989126 kcal Electronic energy + Delta-G solvation = -21994.201411 eV Core-core repulsion = 18706.760523 eV Total energy + Delta-G solvation = -3287.440888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51207 -39.61395 -37.74338 -35.01990 -33.91091 -32.68390 -31.56054 -29.87785 -28.02831 -26.47395 -25.15603 -23.12481 -22.30345 -21.54751 -20.31096 -19.74441 -19.39798 -17.54976 -17.08403 -16.37076 -16.10994 -15.58390 -14.98445 -14.85972 -14.38216 -13.99689 -13.84700 -13.36116 -13.16008 -12.65863 -12.53745 -12.41615 -12.11785 -11.80072 -11.60595 -11.50671 -11.47146 -11.11251 -10.95859 -10.84725 -10.62059 -10.41737 -10.28309 -9.82854 -9.71904 -9.58660 -9.50225 -8.90144 -8.60311 -7.27689 -5.79345 -3.14419 0.11574 1.10502 1.29211 1.32780 2.88382 2.94122 3.35295 3.38478 3.43587 4.13193 4.38087 4.56904 4.82294 5.01895 5.04806 5.17425 5.24264 5.33818 5.51086 5.60087 5.63593 5.70206 5.90720 5.93381 6.07683 6.13108 6.19012 6.26321 6.33989 6.40892 6.53000 6.66638 6.79157 6.96281 7.31932 7.92235 7.96660 8.39900 9.18264 9.91136 10.11268 11.39096 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.004233 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.398425 B = 6613.666534 C = 7405.666578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.121 3.879 5 N -0.582 5.582 6 C 0.600 3.400 7 O -0.533 6.533 8 C 0.019 3.981 9 C 0.088 3.912 10 N -0.575 5.575 11 S 0.698 5.302 12 N -0.529 5.529 13 C 0.068 3.932 14 C -0.144 4.144 15 C 0.186 3.814 16 H 0.057 0.943 17 N -0.745 5.745 18 C -0.241 4.241 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.881 3.119 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.278 1.278 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.214 0.786 32 H 0.064 0.936 33 H 0.141 0.859 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.360 0.640 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.798 -0.289 -17.042 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.313 5.313 6 C 0.382 3.618 7 O -0.410 6.410 8 C -0.155 4.155 9 C -0.106 4.106 10 N -0.416 5.416 11 S 0.743 5.257 12 N -0.378 5.378 13 C -0.057 4.057 14 C -0.185 4.185 15 C 0.076 3.924 16 H 0.075 0.925 17 N -0.387 5.387 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.582 5.582 22 Si 0.712 3.288 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.204 1.204 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.230 0.770 32 H 0.082 0.918 33 H 0.157 0.843 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.193 0.807 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.214 -0.517 -16.125 20.854 hybrid contribution -1.748 1.555 -0.793 2.470 sum 11.466 1.038 -16.918 20.464 Atomic orbital electron populations 1.21662 0.93938 1.02249 1.01600 1.21796 0.96634 1.00050 0.94917 0.91316 1.21796 0.77683 1.01366 0.99276 1.47987 1.07064 1.58167 1.18076 1.16840 0.82815 0.78412 0.83769 1.90802 1.73234 1.49320 1.27674 1.22628 0.98266 1.06308 0.88323 1.23765 0.84820 0.99048 1.02928 1.72255 1.26873 1.23295 1.19183 1.79351 1.03870 1.43481 0.99012 1.72835 1.12659 1.22409 1.29910 1.23071 1.02599 0.96524 0.83528 1.22544 0.99180 1.00367 0.96392 1.20231 0.90881 0.95955 0.85289 0.92529 1.42775 1.78392 1.09950 1.07611 1.19057 1.36287 0.95664 0.86080 0.89203 1.24643 1.01408 0.97335 0.95603 1.69693 1.52244 1.35646 1.00617 0.86598 0.78565 0.86864 0.76778 1.21060 1.21807 1.20431 0.92458 0.91408 0.93464 0.89091 0.90900 0.76988 0.91796 0.84342 0.90206 0.92526 0.80676 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.03 37.16 0.34 -1.67 16 2 C -0.11 -1.74 2.46 -90.49 -0.22 -1.96 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.12 1.64 5.69 -3.71 -0.02 1.61 16 5 N -0.58 -8.03 2.97 -173.91 -0.52 -8.55 16 6 C 0.60 8.29 7.68 -12.37 -0.10 8.19 16 7 O -0.53 -8.28 16.26 5.31 0.09 -8.20 16 8 C 0.02 0.23 6.61 -83.71 -0.55 -0.33 16 9 C 0.09 0.88 11.23 -17.87 -0.20 0.68 16 10 N -0.58 -5.71 11.41 19.43 0.22 -5.49 16 11 S 0.70 5.84 23.69 -107.50 -2.55 3.29 16 12 N -0.53 -5.87 7.65 23.17 0.18 -5.70 16 13 C 0.07 0.93 6.29 -3.71 -0.02 0.91 16 14 C -0.14 -2.39 5.66 -26.62 -0.15 -2.54 16 15 C 0.19 3.38 2.19 -67.87 -0.15 3.23 16 16 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 17 N -0.75 -16.82 4.22 -53.37 -0.23 -17.05 16 18 C -0.24 -6.53 10.41 -15.06 -0.16 -6.69 16 19 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -28.82 13.97 55.49 0.78 -28.04 16 22 Si 0.88 21.80 27.74 -169.99 -4.71 17.09 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.53 6.52 56.52 0.37 -6.17 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.14 7.38 -51.93 -0.38 0.76 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 1.22 7.05 -51.93 -0.37 0.85 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.21 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.14 1.79 3.64 -84.74 -0.31 1.48 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.36 8.16 5.38 -40.82 -0.22 7.94 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 314.36 15.07 4.74 4.74 Total: -1.00 -31.89 314.36 -8.01 -39.90 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.67 Total: 6.50 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.33 Total: 1.51 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: 0.43 Total: -64.82 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: 5.84 SS G_CDS: -2.55 Total: 3.29 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.89 -8.01 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035926925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.885 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds