Wall clock time and date at job start Tue Mar 31 2020 07:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.50151 * 2 1 4 4 C 1.53190 * 109.49727 * 239.93039 * 2 1 3 5 5 N 1.46933 * 108.77580 * 185.41675 * 4 2 1 6 6 C 1.34777 * 120.62743 * 233.58923 * 5 4 2 7 7 O 1.21619 * 120.00248 * 356.20387 * 6 5 4 8 8 C 1.47172 * 119.99870 * 176.48077 * 6 5 4 9 9 C 1.38251 * 128.47754 * 220.89116 * 8 6 5 10 10 N 1.31236 * 111.88754 * 179.97438 * 9 8 6 11 11 N 1.27335 * 120.04200 * 359.97438 * 10 9 8 12 12 S 1.56636 * 109.73909 * 359.69460 * 11 10 9 13 13 C 1.46919 * 118.73938 * 53.85628 * 5 4 2 14 14 C 1.53624 * 108.54496 * 306.09875 * 13 5 4 15 15 C 1.53035 * 109.24210 * 54.85409 * 14 13 5 16 16 H 1.09005 * 109.45597 * 178.48738 * 15 14 13 17 17 N 1.46500 * 109.46209 * 58.53586 * 15 14 13 18 18 C 1.36939 * 120.00217 * 84.92294 * 17 15 14 19 19 H 1.07990 * 119.99754 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99495 * 180.02562 * 18 17 15 21 21 N 1.31611 * 120.00468 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99545 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47269 * 60.00067 * 22 20 18 24 24 H 1.48496 * 109.47128 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46914 * 300.00073 * 22 20 18 26 26 H 1.08997 * 109.46939 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46855 * 300.06701 * 1 2 3 28 28 H 1.08995 * 109.47147 * 60.06964 * 1 2 3 29 29 H 1.08996 * 109.58732 * 65.63220 * 4 2 1 30 30 H 1.08995 * 109.58959 * 305.19911 * 4 2 1 31 31 H 1.07997 * 124.05260 * 359.96409 * 9 8 6 32 32 H 1.09002 * 109.58521 * 65.93106 * 13 5 4 33 33 H 1.09004 * 109.58891 * 186.35160 * 13 5 4 34 34 H 1.09000 * 109.63424 * 294.86006 * 14 13 5 35 35 H 1.09006 * 109.42916 * 174.72705 * 14 13 5 36 36 H 0.97001 * 119.99884 * 264.93621 * 17 15 14 37 37 H 0.96996 * 120.00477 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 3.5046 -0.8290 -1.1697 6 6 4.2811 -0.3860 -2.1783 7 8 3.7707 0.0431 -3.1954 8 6 5.7468 -0.4271 -2.0513 9 6 6.6712 0.5229 -2.4439 10 7 7.9003 0.1507 -2.1732 11 7 8.1176 -0.9718 -1.6127 12 16 6.7580 -1.7033 -1.3486 13 6 4.1050 -1.4318 0.0281 14 6 3.5708 -0.6953 1.2659 15 6 2.0408 -0.7233 1.2482 16 1 1.6582 -0.2249 2.1389 17 7 1.5782 -2.1133 1.2304 18 6 1.4482 -2.8067 2.4041 19 1 1.6861 -2.3288 3.3428 20 6 1.0104 -4.1239 2.3870 21 7 0.7208 -4.7065 1.2430 22 14 0.8322 -5.0696 3.9881 23 1 -0.1459 -4.3778 4.8655 24 1 0.3529 -6.4452 3.6998 25 1 2.1488 -5.1378 4.6718 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5149 0.8894 28 1 -0.3633 0.5127 -0.8906 29 1 1.7638 -0.1575 -2.1389 30 1 1.6053 -1.7213 -1.2984 31 1 6.4129 1.4589 -2.9167 32 1 3.8338 -2.4862 0.0815 33 1 5.1896 -1.3333 -0.0178 34 1 3.9159 0.3386 1.2542 35 1 3.9334 -1.1902 2.1669 36 1 1.3643 -2.5425 0.3873 37 1 0.4146 -5.6268 1.2311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035935772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:49 Heat of formation + Delta-G solvation = 57.075563 kcal Electronic energy + Delta-G solvation = -22202.144488 eV Core-core repulsion = 18914.794075 eV Total energy + Delta-G solvation = -3287.350413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94968 -40.06191 -37.83754 -34.52196 -33.11288 -32.07780 -31.52489 -29.31651 -28.06342 -26.27888 -25.11419 -23.62621 -22.69869 -21.82938 -20.06839 -19.33877 -18.41985 -17.50545 -17.09223 -16.39020 -15.82310 -15.24805 -14.96007 -14.58891 -14.46521 -14.09345 -13.84287 -13.43465 -13.21239 -12.75428 -12.62300 -12.42686 -12.02737 -11.81368 -11.55359 -11.35686 -10.98289 -10.91662 -10.75918 -10.62347 -10.33325 -10.30636 -10.21746 -10.07748 -9.97248 -9.65606 -9.60336 -9.01239 -8.49863 -7.08051 -5.87221 -3.16500 -0.32306 0.62942 1.36969 1.89673 2.69476 2.97934 3.36853 3.42474 3.43404 3.88607 4.33293 4.50305 4.61750 4.93184 5.13572 5.22060 5.32728 5.38417 5.43810 5.58612 5.64445 5.77094 5.89977 5.91699 6.06447 6.18446 6.23566 6.37542 6.42849 6.54151 6.61667 6.76986 6.86365 7.32737 7.51447 7.60930 7.96557 8.30984 9.42965 9.97672 10.32820 11.34910 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.004878 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.714489 B = 5738.467720 C = 6673.145471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.121 3.879 5 N -0.588 5.588 6 C 0.596 3.404 7 O -0.528 6.528 8 C -0.279 4.279 9 C 0.060 3.940 10 N -0.253 5.253 11 N -0.278 5.278 12 S 0.449 5.551 13 C 0.107 3.893 14 C -0.149 4.149 15 C 0.178 3.822 16 H 0.055 0.945 17 N -0.719 5.719 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.008 4.008 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.286 1.286 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.211 0.789 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.384 0.616 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.416 8.782 -4.521 12.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.086 0.914 4 C -0.001 4.001 5 N -0.319 5.319 6 C 0.380 3.620 7 O -0.405 6.405 8 C -0.420 4.420 9 C -0.106 4.106 10 N -0.118 5.118 11 N -0.258 5.258 12 S 0.584 5.416 13 C -0.017 4.017 14 C -0.190 4.190 15 C 0.067 3.933 16 H 0.073 0.927 17 N -0.361 5.361 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.205 4.205 21 N -0.580 5.580 22 Si 0.735 3.265 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.228 0.772 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.219 0.781 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.629 7.809 -4.244 12.388 hybrid contribution -0.966 0.266 0.163 1.015 sum 7.663 8.076 -4.081 11.857 Atomic orbital electron populations 1.21664 0.93875 1.03352 1.00627 1.21730 0.96784 0.98916 0.95477 0.91404 1.21794 0.76926 1.02261 0.99087 1.48026 1.07629 1.58533 1.17715 1.16558 0.82956 0.78760 0.83729 1.90825 1.73470 1.47618 1.28622 1.28075 1.01165 1.01744 1.11019 1.24345 0.85266 1.01717 0.99312 1.70710 1.21036 1.07552 1.12482 1.78711 1.22955 1.06575 1.17605 1.83052 0.94219 1.23326 1.40989 1.22163 0.95374 0.99880 0.84245 1.22622 1.00789 0.98618 0.96991 1.20222 0.90459 0.87525 0.95044 0.92744 1.42474 1.79000 1.07617 1.07016 1.19161 1.37715 0.93870 0.86523 0.91244 1.24695 1.02013 0.97157 0.96606 1.69622 1.51394 1.13207 1.23747 0.86322 0.77802 0.79239 0.83098 1.21324 1.21763 1.21314 0.90914 0.92639 0.93633 0.89286 0.89900 0.77212 0.88314 0.92496 0.93078 0.90286 0.78083 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.05 37.16 0.34 -1.66 16 2 C -0.11 -1.60 2.67 -90.50 -0.24 -1.85 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.83 5.41 -3.71 -0.02 1.81 16 5 N -0.59 -8.63 2.97 -173.87 -0.52 -9.15 16 6 C 0.60 8.84 7.66 -12.63 -0.10 8.74 16 7 O -0.53 -9.12 16.53 5.26 0.09 -9.03 16 8 C -0.28 -3.55 5.92 -35.95 -0.21 -3.77 16 9 C 0.06 0.70 11.69 -17.80 -0.21 0.49 16 10 N -0.25 -3.34 11.54 30.36 0.35 -2.99 16 11 N -0.28 -3.67 12.51 60.35 0.75 -2.92 16 12 S 0.45 5.17 20.48 -107.50 -2.20 2.97 16 13 C 0.11 1.54 5.79 -3.49 -0.02 1.52 16 14 C -0.15 -2.23 5.79 -26.39 -0.15 -2.39 16 15 C 0.18 3.02 2.53 -67.89 -0.17 2.85 16 16 H 0.05 0.96 8.08 -51.93 -0.42 0.55 16 17 N -0.72 -15.29 3.63 -53.39 -0.19 -15.49 16 18 C -0.24 -5.95 9.93 -15.06 -0.15 -6.10 16 19 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.93 -25.83 13.06 55.49 0.72 -25.11 16 22 Si 0.90 20.93 29.55 -169.99 -5.02 15.90 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H 0.07 1.24 7.53 -51.93 -0.39 0.85 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.32 7.02 -51.93 -0.36 0.96 16 30 H 0.08 1.38 6.64 -51.93 -0.34 1.04 16 31 H 0.21 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.10 1.64 7.74 -51.93 -0.40 1.24 16 33 H 0.06 0.71 3.81 -28.99 -0.11 0.60 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.38 8.75 5.92 -40.82 -0.24 8.51 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 315.20 15.07 4.75 4.75 Total: -1.00 -28.65 315.20 -6.66 -35.31 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.36 Total: 6.40 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.03 Total: -0.66 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 1.12 Total: -55.65 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -2.20 Total: 2.97 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.65 -6.66 -35.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035935772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.387 kcal (2) G-P(sol) polarization free energy of solvation -28.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds