Wall clock time and date at job start Tue Mar 31 2020 07:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.52371 * 2 1 4 4 C 1.53194 * 109.49803 * 120.07579 * 2 1 3 5 5 N 1.46922 * 108.77518 * 174.58780 * 4 2 1 6 6 C 1.34780 * 120.63123 * 126.37279 * 5 4 2 7 7 O 1.21625 * 119.99804 * 353.52636 * 6 5 4 8 8 C 1.47172 * 120.00141 * 173.53026 * 6 5 4 9 9 C 1.38245 * 128.47207 * 156.31420 * 8 6 5 10 10 N 1.31248 * 111.88569 * 179.85158 * 9 8 6 11 11 N 1.27340 * 120.03372 * 0.48484 * 10 9 8 12 12 S 1.56632 * 109.74316 * 359.72452 * 11 10 9 13 13 C 1.46925 * 118.74001 * 306.39606 * 5 4 2 14 14 C 1.53185 * 108.77842 * 53.60722 * 13 5 4 15 15 C 1.53036 * 109.50048 * 239.91696 * 2 1 3 16 16 H 1.09005 * 109.45980 * 58.66167 * 15 2 1 17 17 N 1.46504 * 109.45946 * 298.70269 * 15 2 1 18 18 C 1.36934 * 119.99717 * 154.92947 * 17 15 2 19 19 H 1.08000 * 120.00272 * 359.97438 * 18 17 15 20 20 C 1.38819 * 119.99713 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99958 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99740 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47437 * 60.00304 * 22 20 18 24 24 H 1.48505 * 109.46735 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47100 * 299.99736 * 22 20 18 26 26 H 1.09009 * 109.47054 * 180.08672 * 1 2 3 27 27 H 1.09000 * 109.47512 * 300.08112 * 1 2 3 28 28 H 1.08994 * 109.47672 * 60.08780 * 1 2 3 29 29 H 1.08998 * 109.58288 * 54.79958 * 4 2 1 30 30 H 1.08996 * 109.70617 * 294.44727 * 4 2 1 31 31 H 1.07990 * 124.06232 * 359.97438 * 9 8 6 32 32 H 1.09001 * 109.58477 * 293.81542 * 13 5 4 33 33 H 1.09004 * 109.58962 * 173.40076 * 13 5 4 34 34 H 1.08999 * 109.50116 * 185.41691 * 14 13 5 35 35 H 1.08995 * 109.52805 * 65.33038 * 14 13 5 36 36 H 0.96994 * 119.99681 * 334.93033 * 17 15 2 37 37 H 0.96994 * 119.99741 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 1.2497 5 7 3.5046 -0.8290 1.1697 6 6 4.2811 -0.3854 2.1780 7 8 3.7821 0.2130 3.1119 8 6 5.7329 -0.6251 2.1490 9 6 6.7342 0.0810 2.7895 10 7 7.9218 -0.4187 2.5396 11 7 8.0397 -1.4310 1.7761 12 16 6.6260 -1.8853 1.2777 13 6 4.1053 -1.4265 -0.0307 14 6 3.5709 -0.6950 -1.2659 15 6 2.0408 -0.7231 -1.2483 16 1 1.6582 -0.2245 -2.1389 17 7 1.5784 -2.1131 -1.2307 18 6 1.4469 -2.8058 -2.4045 19 1 1.6837 -2.3273 -3.3434 20 6 1.0093 -4.1231 -2.3878 21 7 0.7202 -4.7060 -1.2437 22 14 0.8306 -5.0683 -3.9891 23 1 2.1467 -5.1363 -4.6733 24 1 0.3502 -6.4436 -3.7010 25 1 -0.1480 -4.3762 -4.8658 26 1 -0.3634 -1.0277 0.0016 27 1 -0.3634 0.5151 0.8892 28 1 -0.3634 0.5124 -0.8907 29 1 1.6052 -1.7215 1.2981 30 1 1.7637 -0.1600 2.1403 31 1 6.5599 0.9393 3.4212 32 1 3.8376 -2.4817 -0.0865 33 1 5.1896 -1.3245 0.0139 34 1 3.9335 -1.1897 -2.1670 35 1 3.9158 0.3389 -1.2546 36 1 1.3654 -2.5427 -0.3875 37 1 0.4140 -5.6263 -1.2321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035935773.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:52 Heat of formation + Delta-G solvation = 57.912842 kcal Electronic energy + Delta-G solvation = -22211.542765 eV Core-core repulsion = 18924.228659 eV Total energy + Delta-G solvation = -3287.314106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.91555 -40.08645 -37.83158 -34.53940 -33.12289 -32.05530 -31.54087 -29.34271 -28.04266 -26.30107 -25.11183 -23.62707 -22.68892 -21.83879 -20.03528 -19.36890 -18.41369 -17.49813 -17.01922 -16.35870 -15.91534 -15.25405 -14.93234 -14.62179 -14.43018 -14.10458 -13.79870 -13.44573 -13.23881 -12.75856 -12.63010 -12.45271 -12.03796 -11.82795 -11.56310 -11.36127 -10.98406 -10.91758 -10.76069 -10.62079 -10.30049 -10.27083 -10.18293 -10.06645 -9.96946 -9.66144 -9.58106 -9.01276 -8.50072 -7.08513 -5.87676 -3.16930 -0.34716 0.68416 1.39416 1.88745 2.80066 2.96488 3.36660 3.42282 3.43247 3.90658 4.34202 4.50017 4.61728 4.90070 5.13485 5.22237 5.32169 5.41228 5.43752 5.58712 5.64215 5.77232 5.88358 5.91731 6.06159 6.17882 6.22901 6.37751 6.42945 6.53695 6.61482 6.76440 6.86479 7.32481 7.54118 7.60580 7.97077 8.30585 9.42577 9.97168 10.32386 11.34472 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.004966 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.026814 B = 5636.878068 C = 6649.471098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.121 3.879 5 N -0.591 5.591 6 C 0.597 3.403 7 O -0.529 6.529 8 C -0.287 4.287 9 C 0.065 3.935 10 N -0.257 5.257 11 N -0.283 5.283 12 S 0.457 5.543 13 C 0.108 3.892 14 C -0.148 4.148 15 C 0.178 3.822 16 H 0.055 0.945 17 N -0.719 5.719 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.008 4.008 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.212 0.788 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.384 0.616 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.259 8.457 4.463 12.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.086 0.914 4 C -0.001 4.001 5 N -0.322 5.322 6 C 0.382 3.618 7 O -0.407 6.407 8 C -0.428 4.428 9 C -0.102 4.102 10 N -0.121 5.121 11 N -0.264 5.264 12 S 0.593 5.407 13 C -0.016 4.016 14 C -0.190 4.190 15 C 0.067 3.933 16 H 0.073 0.927 17 N -0.361 5.361 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.205 4.205 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.229 0.771 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.219 0.781 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.383 7.492 4.051 11.950 hybrid contribution -0.872 0.246 -0.019 0.906 sum 7.511 7.738 4.032 11.513 Atomic orbital electron populations 1.21664 0.93898 1.03319 1.00639 1.21723 0.96771 0.98972 0.95428 0.91356 1.21791 0.76870 1.02179 0.99224 1.47992 1.07664 1.59219 1.17355 1.16536 0.82826 0.79470 0.82971 1.90814 1.73442 1.41468 1.34961 1.28090 1.00963 1.04724 1.08990 1.24399 0.84996 1.01431 0.99370 1.70782 1.23796 1.05820 1.11662 1.78657 1.22506 1.11967 1.13223 1.83185 0.95711 1.26722 1.35092 1.22094 0.94876 1.00199 0.84423 1.22543 1.00858 0.98707 0.96862 1.20227 0.90403 0.87529 0.95096 0.92683 1.42475 1.79010 1.07620 1.07002 1.19164 1.37721 0.93866 0.86512 0.91224 1.24699 1.02009 0.97163 0.96611 1.69627 1.51409 1.13198 1.23750 0.86319 0.77806 0.79233 0.83091 1.21300 1.21770 1.21329 0.90936 0.93629 0.92649 0.89937 0.89235 0.77128 0.88266 0.92552 0.90142 0.93012 0.78087 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.05 37.16 0.34 -1.66 16 2 C -0.11 -1.61 2.67 -90.50 -0.24 -1.85 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.82 5.43 -3.71 -0.02 1.80 16 5 N -0.59 -8.66 2.97 -174.14 -0.52 -9.18 16 6 C 0.60 8.88 7.66 -12.63 -0.10 8.78 16 7 O -0.53 -9.07 16.46 5.26 0.09 -8.99 16 8 C -0.29 -3.69 6.21 -35.95 -0.22 -3.91 16 9 C 0.06 0.77 11.62 -17.80 -0.21 0.57 16 10 N -0.26 -3.43 11.54 30.36 0.35 -3.08 16 11 N -0.28 -3.80 12.51 60.35 0.75 -3.04 16 12 S 0.46 5.34 19.87 -107.50 -2.14 3.21 16 13 C 0.11 1.54 5.45 -3.71 -0.02 1.52 16 14 C -0.15 -2.20 5.78 -26.61 -0.15 -2.36 16 15 C 0.18 3.01 2.53 -67.89 -0.17 2.84 16 16 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 17 N -0.72 -15.20 3.64 -53.38 -0.19 -15.40 16 18 C -0.24 -5.91 9.93 -15.06 -0.15 -6.06 16 19 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 21 N -0.93 -25.74 13.06 55.49 0.72 -25.02 16 22 Si 0.90 20.86 29.55 -169.99 -5.02 15.83 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 26 H 0.07 1.24 7.54 -51.92 -0.39 0.85 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.36 6.64 -51.93 -0.34 1.02 16 30 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 31 H 0.21 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.10 1.62 7.74 -51.93 -0.40 1.22 16 33 H 0.06 0.70 3.69 -24.34 -0.09 0.61 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.38 8.70 5.93 -40.82 -0.24 8.46 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 314.27 15.07 4.74 4.74 Total: -1.00 -28.51 314.27 -6.60 -35.11 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.33 Total: 6.48 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.04 Total: -0.65 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 1.12 Total: -55.72 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 5.34 SS G_CDS: -2.14 Total: 3.21 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.51 -6.60 -35.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035935773.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.020 kcal (2) G-P(sol) polarization free energy of solvation -28.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds