Wall clock time and date at job start Tue Mar 31 2020 07:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.49991 * 2 1 4 4 C 1.53199 * 109.52703 * 120.08026 * 2 1 3 5 5 N 1.46921 * 108.77625 * 174.60246 * 4 2 1 6 6 C 1.34782 * 120.63254 * 126.41607 * 5 4 2 7 7 O 1.21620 * 119.99282 * 353.50404 * 6 5 4 8 8 C 1.47168 * 119.99981 * 173.50718 * 6 5 4 9 9 C 1.38244 * 128.47435 * 156.32258 * 8 6 5 10 10 N 1.31235 * 111.89161 * 179.80523 * 9 8 6 11 11 N 1.27339 * 120.03255 * 0.53727 * 10 9 8 12 12 S 1.56635 * 109.74266 * 359.68698 * 11 10 9 13 13 C 1.46926 * 118.74147 * 306.38965 * 5 4 2 14 14 C 1.53191 * 108.77546 * 53.60975 * 13 5 4 15 15 C 1.53039 * 109.49790 * 239.93177 * 2 1 3 16 16 H 1.08993 * 109.46550 * 298.65995 * 15 2 1 17 17 N 1.46507 * 109.45837 * 58.63409 * 15 2 1 18 18 C 1.36936 * 119.99934 * 205.00321 * 17 15 2 19 19 H 1.08002 * 119.99622 * 359.97438 * 18 17 15 20 20 C 1.38806 * 120.00068 * 179.72459 * 18 17 15 21 21 N 1.31624 * 120.00083 * 0.27001 * 20 18 17 22 22 Si 1.86795 * 120.00340 * 180.27147 * 20 18 17 23 23 H 1.48510 * 109.47031 * 89.99649 * 22 20 18 24 24 H 1.48495 * 109.47371 * 209.99532 * 22 20 18 25 25 H 1.48496 * 109.46979 * 330.00122 * 22 20 18 26 26 H 1.08993 * 109.46952 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46682 * 300.06741 * 1 2 3 28 28 H 1.09002 * 109.47081 * 60.06528 * 1 2 3 29 29 H 1.09003 * 109.58347 * 294.39021 * 4 2 1 30 30 H 1.09001 * 109.58328 * 54.81231 * 4 2 1 31 31 H 1.08004 * 124.05580 * 359.97393 * 9 8 6 32 32 H 1.08996 * 109.59080 * 173.40130 * 13 5 4 33 33 H 1.09001 * 109.58501 * 293.82494 * 13 5 4 34 34 H 1.08997 * 109.50128 * 185.41577 * 14 13 5 35 35 H 1.09003 * 109.49702 * 65.31488 * 14 13 5 36 36 H 0.97001 * 119.99959 * 24.99320 * 17 15 2 37 37 H 0.97000 * 120.00407 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 1.2494 5 7 3.5053 -0.8283 1.1690 6 6 4.2820 -0.3853 2.1775 7 8 3.7829 0.2124 3.1118 8 6 5.7337 -0.6248 2.1481 9 6 6.7350 0.0807 2.7890 10 7 7.9225 -0.4191 2.5394 11 7 8.0404 -1.4306 1.7750 12 16 6.6267 -1.8843 1.2759 13 6 4.1060 -1.4255 -0.0316 14 6 3.5709 -0.6940 -1.2666 15 6 2.0408 -0.7228 -1.2485 16 1 1.6974 -1.7571 -1.2354 17 7 1.5259 -0.0528 -2.4453 18 6 1.3957 -0.7490 -3.6172 19 1 1.6730 -1.7920 -3.6593 20 6 0.9025 -0.1157 -4.7497 21 7 0.5649 1.1554 -4.6985 22 14 0.7178 -1.0674 -6.3464 23 1 -0.6337 -1.6803 -6.4038 24 1 0.8917 -0.1439 -7.4961 25 1 1.7483 -2.1348 -6.4084 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5149 0.8894 28 1 -0.3633 0.5128 -0.8906 29 1 1.7645 -0.1580 2.1388 30 1 1.6064 -1.7217 1.2979 31 1 6.5607 0.9386 3.4216 32 1 5.1902 -1.3230 0.0126 33 1 3.8387 -2.4808 -0.0875 34 1 3.9334 -1.1884 -2.1678 35 1 3.9154 0.3400 -1.2547 36 1 1.2771 0.8840 -2.4075 37 1 0.2199 1.5980 -5.4897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035935774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:55 Heat of formation + Delta-G solvation = 55.935582 kcal Electronic energy + Delta-G solvation = -21793.733936 eV Core-core repulsion = 18506.334089 eV Total energy + Delta-G solvation = -3287.399847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04622 -40.18179 -37.81665 -34.86310 -33.20450 -32.14323 -31.61687 -29.52674 -28.12064 -26.41631 -25.13972 -23.24382 -22.66692 -21.77924 -20.17762 -19.69172 -19.11289 -17.30002 -17.16120 -16.52251 -16.05159 -15.30878 -15.02165 -14.96789 -14.38383 -13.98000 -13.88159 -13.47303 -13.32040 -12.86877 -12.57711 -12.50494 -12.26199 -12.02109 -11.75338 -11.29446 -11.04232 -10.92278 -10.81856 -10.56340 -10.42916 -10.32597 -10.26949 -10.21271 -9.90580 -9.75743 -9.69645 -8.98781 -8.75891 -7.06018 -5.85308 -3.14841 -0.48325 0.53612 1.25045 1.77193 2.59605 2.82033 3.37249 3.42635 3.44658 3.77880 4.18077 4.48923 4.50233 4.71707 5.07784 5.10442 5.13246 5.30866 5.35664 5.39071 5.56065 5.62563 5.77199 5.94442 5.99585 6.14826 6.19465 6.31580 6.35344 6.46549 6.66630 6.81203 6.91215 7.11704 7.41879 7.60917 7.80167 8.32466 9.44295 10.00280 10.34951 11.36930 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021532 B = 0.004041 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.050829 B = 6927.437810 C = 7814.147281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.122 3.878 5 N -0.596 5.596 6 C 0.600 3.400 7 O -0.523 6.523 8 C -0.287 4.287 9 C 0.069 3.931 10 N -0.253 5.253 11 N -0.277 5.277 12 S 0.445 5.555 13 C 0.100 3.900 14 C -0.151 4.151 15 C 0.184 3.816 16 H 0.051 0.949 17 N -0.719 5.719 18 C -0.242 4.242 19 H 0.071 0.929 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.214 0.786 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.385 0.615 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.801 -6.041 13.297 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.001 3.999 5 N -0.328 5.328 6 C 0.384 3.616 7 O -0.400 6.400 8 C -0.427 4.427 9 C -0.098 4.098 10 N -0.118 5.118 11 N -0.258 5.258 12 S 0.581 5.419 13 C -0.025 4.025 14 C -0.192 4.192 15 C 0.073 3.927 16 H 0.069 0.931 17 N -0.359 5.359 18 C -0.373 4.373 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.230 0.770 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.219 0.781 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.927 -7.024 12.892 17.182 hybrid contribution -0.843 0.921 -0.383 1.306 sum 8.084 -6.103 12.509 16.095 Atomic orbital electron populations 1.21656 0.93770 1.01904 1.02057 1.21769 0.96858 1.00193 0.94319 0.90993 1.21849 0.76700 1.01420 0.99967 1.48017 1.07710 1.59876 1.17237 1.16533 0.82842 0.79294 0.82883 1.90831 1.73396 1.40885 1.34925 1.28053 1.00864 1.04894 1.08938 1.24434 0.84903 1.01271 0.99175 1.70774 1.23767 1.05686 1.11537 1.78712 1.22023 1.12008 1.13016 1.82923 0.96226 1.27210 1.35589 1.22243 0.96168 0.98586 0.85454 1.22734 1.00784 1.00484 0.95222 1.20196 0.89971 0.95938 0.86586 0.93100 1.42402 1.76316 1.11499 1.05722 1.19206 1.36201 0.94199 0.87739 0.91145 1.24732 1.01808 0.95994 0.98098 1.69656 1.49548 1.09533 1.29113 0.86228 0.77833 0.78711 0.83608 1.21702 1.21814 1.20757 0.92928 0.93669 0.90611 0.88831 0.90800 0.76979 0.91874 0.89952 0.89959 0.91917 0.78128 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.03 37.16 0.34 -1.67 16 2 C -0.11 -1.65 2.46 -90.50 -0.22 -1.87 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.12 1.54 5.73 -3.71 -0.02 1.52 16 5 N -0.60 -7.42 2.97 -174.13 -0.52 -7.93 16 6 C 0.60 7.90 7.66 -12.63 -0.10 7.80 16 7 O -0.52 -8.24 16.46 5.26 0.09 -8.16 16 8 C -0.29 -3.24 6.21 -35.96 -0.22 -3.47 16 9 C 0.07 0.75 11.62 -17.80 -0.21 0.54 16 10 N -0.25 -3.13 11.54 30.36 0.35 -2.78 16 11 N -0.28 -3.34 12.51 60.35 0.75 -2.58 16 12 S 0.44 4.26 19.87 -107.50 -2.14 2.13 16 13 C 0.10 1.14 5.71 -3.71 -0.02 1.12 16 14 C -0.15 -2.27 5.66 -26.61 -0.15 -2.42 16 15 C 0.18 3.15 2.19 -67.88 -0.15 3.00 16 16 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 17 N -0.72 -16.22 4.41 -53.38 -0.24 -16.46 16 18 C -0.24 -6.18 9.93 -15.06 -0.15 -6.32 16 19 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -26.77 13.06 55.49 0.72 -26.05 16 22 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.35 7.36 -51.93 -0.38 0.96 16 29 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.21 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.06 0.65 3.69 -24.34 -0.09 0.56 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.38 9.46 7.50 -40.82 -0.31 9.16 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 318.20 15.07 4.80 4.80 Total: -1.00 -30.26 318.20 -6.69 -36.95 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.49 Total: 5.93 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.00 Total: -2.13 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 1.08 Total: -55.80 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -2.14 Total: 2.13 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.26 -6.69 -36.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035935774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.888 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds