Wall clock time and date at job start Tue Mar 31 2020 07:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.49725 * 2 1 4 4 C 1.53186 * 109.49863 * 239.93359 * 2 1 3 5 5 N 1.46934 * 108.77566 * 185.41051 * 4 2 1 6 6 C 1.34771 * 120.63168 * 233.58332 * 5 4 2 7 7 O 1.21623 * 119.99883 * 6.46479 * 6 5 4 8 8 C 1.47168 * 120.00207 * 186.46457 * 6 5 4 9 9 C 1.38245 * 128.47894 * 203.72991 * 8 6 5 10 10 N 1.31238 * 111.89166 * 179.97438 * 9 8 6 11 11 N 1.27337 * 120.03890 * 0.02562 * 10 9 8 12 12 S 1.56644 * 109.73849 * 359.97438 * 11 10 9 13 13 C 1.46924 * 118.73611 * 53.86297 * 5 4 2 14 14 C 1.53626 * 108.54090 * 306.09087 * 13 5 4 15 15 C 1.53035 * 109.24301 * 54.86182 * 14 13 5 16 16 H 1.08997 * 109.45625 * 58.52097 * 15 14 13 17 17 N 1.46499 * 109.46033 * 178.48945 * 15 14 13 18 18 C 1.36935 * 119.99980 * 275.06009 * 17 15 14 19 19 H 1.07997 * 120.00143 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99911 * 180.02562 * 18 17 15 21 21 N 1.31626 * 119.99851 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99997 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47053 * 90.00261 * 22 20 18 24 24 H 1.48506 * 109.47210 * 210.00029 * 22 20 18 25 25 H 1.48496 * 109.47504 * 329.99852 * 22 20 18 26 26 H 1.09003 * 109.46962 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47225 * 300.06453 * 1 2 3 28 28 H 1.09000 * 109.47109 * 60.06732 * 1 2 3 29 29 H 1.09003 * 109.59040 * 65.62586 * 4 2 1 30 30 H 1.08999 * 109.70452 * 305.26634 * 4 2 1 31 31 H 1.08005 * 124.05268 * 0.03680 * 9 8 6 32 32 H 1.08996 * 109.59231 * 65.92255 * 13 5 4 33 33 H 1.09006 * 109.58600 * 186.35387 * 13 5 4 34 34 H 1.08999 * 109.63633 * 294.86649 * 14 13 5 35 35 H 1.09002 * 109.45735 * 174.74234 * 14 13 5 36 36 H 0.96999 * 119.99980 * 95.06740 * 17 15 14 37 37 H 0.96997 * 119.99897 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 3.5047 -0.8287 -1.1697 6 6 4.2811 -0.3858 -2.1783 7 8 3.7820 0.2119 -3.1126 8 6 5.7329 -0.6254 -2.1492 9 6 6.7342 0.0807 -2.7895 10 7 7.9221 -0.4166 -2.5366 11 7 8.0395 -1.4331 -1.7787 12 16 6.6252 -1.8902 -1.2839 13 6 4.1051 -1.4317 0.0280 14 6 3.5708 -0.6952 1.2658 15 6 2.0409 -0.7234 1.2482 16 1 1.6969 -1.7575 1.2348 17 7 1.5266 -0.0535 2.4453 18 6 1.3964 -0.7501 3.6171 19 1 1.6732 -1.7931 3.6588 20 6 0.9086 -0.1155 4.7512 21 7 0.7839 -0.7850 5.8776 22 14 0.4291 1.6884 4.6788 23 1 -1.0022 1.8053 4.3007 24 1 0.6418 2.3110 6.0101 25 1 1.2663 2.3831 3.6681 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5148 0.8894 28 1 -0.3633 0.5128 -0.8906 29 1 1.7638 -0.1574 -2.1389 30 1 1.6054 -1.7212 -1.3009 31 1 6.5599 0.9393 -3.4211 32 1 3.8339 -2.4860 0.0815 33 1 5.1897 -1.3330 -0.0178 34 1 3.9159 0.3387 1.2542 35 1 3.9334 -1.1896 2.1671 36 1 1.2782 0.8834 2.4079 37 1 0.4427 -0.3416 6.6700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035935775.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:58 Heat of formation + Delta-G solvation = 60.074947 kcal Electronic energy + Delta-G solvation = -21855.426529 eV Core-core repulsion = 18568.206178 eV Total energy + Delta-G solvation = -3287.220350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.08371 -40.24871 -37.92907 -35.00842 -33.27022 -32.18442 -31.68954 -30.03794 -28.19203 -26.54882 -25.29151 -23.09044 -22.68469 -21.67170 -20.29256 -19.78544 -19.24141 -17.67421 -17.26823 -16.57120 -16.09617 -15.41888 -15.06291 -14.94757 -14.54786 -14.19398 -13.87387 -13.50041 -13.28538 -12.91915 -12.66357 -12.61451 -12.35104 -12.14987 -11.92060 -11.57918 -11.17801 -11.04912 -10.89405 -10.69951 -10.47496 -10.38360 -10.31239 -10.25259 -9.93581 -9.78386 -9.66879 -9.02389 -8.83931 -7.37929 -5.86407 -3.22713 -0.51730 0.50280 1.21875 1.73627 2.54265 2.75936 3.30423 3.33327 3.39512 3.74208 4.13079 4.45198 4.50549 4.65870 4.88115 4.96269 5.02875 5.23949 5.29142 5.29919 5.47989 5.51890 5.65939 5.79565 5.86576 5.93909 6.08071 6.14980 6.21921 6.32291 6.55206 6.60908 6.78807 7.04729 7.38689 7.74296 7.88121 8.32477 9.10095 9.82866 10.01977 11.31636 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.022233 B = 0.004177 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.092039 B = 6701.309919 C = 7346.490360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 H 0.071 0.929 4 C 0.123 3.877 5 N -0.597 5.597 6 C 0.600 3.400 7 O -0.523 6.523 8 C -0.289 4.289 9 C 0.069 3.931 10 N -0.254 5.254 11 N -0.276 5.276 12 S 0.447 5.553 13 C 0.100 3.900 14 C -0.150 4.150 15 C 0.188 3.812 16 H 0.061 0.939 17 N -0.744 5.744 18 C -0.246 4.246 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.932 5.932 22 Si 0.881 3.119 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.213 0.787 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.362 0.638 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.433 -1.848 -16.232 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.135 4.135 3 H 0.089 0.911 4 C 0.002 3.998 5 N -0.330 5.330 6 C 0.385 3.615 7 O -0.401 6.401 8 C -0.430 4.430 9 C -0.097 4.097 10 N -0.118 5.118 11 N -0.256 5.256 12 S 0.583 5.417 13 C -0.025 4.025 14 C -0.192 4.192 15 C 0.078 3.922 16 H 0.079 0.921 17 N -0.386 5.386 18 C -0.376 4.376 19 H 0.109 0.891 20 C -0.188 4.188 21 N -0.579 5.579 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.230 0.770 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.195 0.805 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.562 -2.900 -15.785 18.190 hybrid contribution -1.006 2.400 -0.422 2.636 sum 7.557 -0.500 -16.207 17.890 Atomic orbital electron populations 1.21667 0.93785 1.02326 1.01738 1.21813 0.96853 1.00204 0.94658 0.91055 1.21816 0.76809 1.01543 0.99680 1.48022 1.07667 1.59812 1.17466 1.16530 0.82865 0.79256 0.82818 1.90832 1.73421 1.40933 1.34867 1.28043 1.00833 1.04997 1.09086 1.24432 0.84903 1.01330 0.99083 1.70777 1.23755 1.05663 1.11584 1.78720 1.21998 1.11786 1.13145 1.82949 0.96226 1.26850 1.35680 1.22337 0.96279 0.98632 0.85245 1.22764 1.00263 1.00472 0.95668 1.20172 0.90138 0.96299 0.85552 0.92144 1.42766 1.78041 1.10154 1.07593 1.19039 1.36737 0.95754 0.86080 0.89105 1.24655 1.01161 0.97378 0.95591 1.69694 1.51757 1.35764 1.00670 0.86611 0.78631 0.86720 0.76884 1.20985 1.21746 1.20397 0.92387 0.91330 0.93391 0.88753 0.90575 0.77007 0.89670 0.91733 0.91996 0.89490 0.80537 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.02 37.16 0.34 -1.51 16 2 C -0.12 -1.58 2.46 -90.50 -0.22 -1.80 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.12 1.45 5.72 -3.71 -0.02 1.43 16 5 N -0.60 -7.04 2.97 -173.87 -0.52 -7.56 16 6 C 0.60 7.57 7.66 -12.64 -0.10 7.47 16 7 O -0.52 -7.94 16.46 5.26 0.09 -7.85 16 8 C -0.29 -3.15 6.20 -35.96 -0.22 -3.37 16 9 C 0.07 0.73 11.62 -17.80 -0.21 0.52 16 10 N -0.25 -3.06 11.54 30.36 0.35 -2.71 16 11 N -0.28 -3.26 12.51 60.35 0.75 -2.50 16 12 S 0.45 4.16 19.88 -107.50 -2.14 2.02 16 13 C 0.10 1.09 5.74 -3.49 -0.02 1.07 16 14 C -0.15 -2.16 5.67 -26.39 -0.15 -2.31 16 15 C 0.19 3.07 2.19 -67.89 -0.15 2.92 16 16 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 17 N -0.74 -15.72 4.22 -53.39 -0.23 -15.95 16 18 C -0.25 -6.36 10.41 -15.06 -0.16 -6.52 16 19 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 20 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -27.95 13.97 55.49 0.78 -27.17 16 22 Si 0.88 21.10 27.74 -169.99 -4.71 16.39 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.07 7.36 -51.93 -0.38 0.69 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.14 7.00 -51.93 -0.36 0.77 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.21 1.73 8.06 -52.48 -0.42 1.31 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.63 3.68 -24.33 -0.09 0.54 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.36 7.73 5.36 -40.82 -0.22 7.51 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -31.36 315.13 -6.33 -37.69 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.45 Total: 4.86 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.01 Total: -1.96 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 1.14 Total: -55.89 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.09 Total: -7.85 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.39 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -2.14 Total: 2.02 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.36 -6.33 -37.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035935775.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.761 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds