Wall clock time and date at job start Tue Mar 31 2020 07:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.49917 * 2 1 4 4 C 1.53197 * 109.49762 * 239.93266 * 2 1 3 5 5 N 1.46918 * 108.77703 * 185.38144 * 4 2 1 6 6 C 1.34777 * 120.63012 * 233.59150 * 5 4 2 7 7 O 1.21607 * 120.00122 * 183.02741 * 6 5 4 8 8 C 1.47444 * 120.00061 * 2.75033 * 6 5 4 9 9 C 1.37990 * 124.15620 * 172.85897 * 8 6 5 10 10 S 1.72098 * 104.03295 * 179.97438 * 9 8 6 11 11 N 1.56404 * 96.15640 * 359.97438 * 10 9 8 12 12 N 1.27420 * 109.87583 * 359.76483 * 11 10 9 13 13 C 1.46922 * 118.73901 * 53.86225 * 5 4 2 14 14 C 1.53625 * 108.54637 * 306.09273 * 13 5 4 15 15 C 1.53040 * 109.23806 * 54.85426 * 14 13 5 16 16 H 1.08996 * 109.46211 * 178.49437 * 15 14 13 17 17 N 1.46496 * 109.45975 * 58.53640 * 15 14 13 18 18 C 1.36935 * 120.00506 * 84.92856 * 17 15 14 19 19 H 1.07996 * 119.99625 * 0.02562 * 18 17 15 20 20 C 1.38815 * 120.00404 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99787 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99960 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47392 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47241 * 120.00609 * 22 20 18 25 25 H 1.48501 * 109.46989 * 240.00243 * 22 20 18 26 26 H 1.09004 * 109.47205 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46878 * 300.06664 * 1 2 3 28 28 H 1.09001 * 109.47523 * 60.06540 * 1 2 3 29 29 H 1.09001 * 109.57963 * 65.59349 * 4 2 1 30 30 H 1.08994 * 109.58629 * 305.17175 * 4 2 1 31 31 H 1.08005 * 127.98188 * 359.97438 * 9 8 6 32 32 H 1.09001 * 109.58824 * 65.92815 * 13 5 4 33 33 H 1.09006 * 109.58630 * 186.35321 * 13 5 4 34 34 H 1.09003 * 109.63713 * 294.86785 * 14 13 5 35 35 H 1.08997 * 109.46041 * 174.73849 * 14 13 5 36 36 H 0.97009 * 119.99853 * 264.92789 * 17 15 14 37 37 H 0.96997 * 119.99988 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5045 -0.8282 -1.1702 6 6 4.2806 -0.3850 -2.1791 7 8 5.4871 -0.5271 -2.1258 8 6 3.6661 0.2667 -3.3503 9 6 4.3806 0.8763 -4.3612 10 16 3.1693 1.4514 -5.4401 11 7 1.9478 0.9285 -4.6150 12 7 2.3570 0.3336 -3.5651 13 6 4.1056 -1.4307 0.0274 14 6 3.5715 -0.6943 1.2654 15 6 2.0415 -0.7230 1.2481 16 1 1.6588 -0.2247 2.1388 17 7 1.5796 -2.1132 1.2306 18 6 1.4501 -2.8065 2.4043 19 1 1.6880 -2.3284 3.3430 20 6 1.0119 -4.1236 2.3878 21 7 0.7215 -4.7062 1.2438 22 14 0.8346 -5.0691 3.9890 23 1 1.2205 -4.1948 5.1255 24 1 -0.5762 -5.5017 4.1547 25 1 1.7180 -6.2624 3.9596 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5149 0.8894 28 1 -0.3634 0.5128 -0.8906 29 1 1.7631 -0.1576 -2.1389 30 1 1.6056 -1.7214 -1.2982 31 1 5.4525 0.9708 -4.4540 32 1 3.8349 -2.4852 0.0811 33 1 5.1902 -1.3316 -0.0187 34 1 3.9160 0.3398 1.2535 35 1 3.9345 -1.1884 2.1666 36 1 1.3655 -2.5425 0.3875 37 1 0.4157 -5.6266 1.2322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036128147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:16 Heat of formation + Delta-G solvation = 67.164383 kcal Electronic energy + Delta-G solvation = -22353.006565 eV Core-core repulsion = 19066.093636 eV Total energy + Delta-G solvation = -3286.912929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39592 -39.52359 -37.71734 -34.24668 -32.59481 -32.45842 -31.41323 -29.27699 -27.43686 -26.07733 -25.39644 -23.74879 -22.73207 -21.39194 -20.65828 -19.09561 -18.08336 -17.31132 -16.51090 -16.23226 -16.05492 -15.38171 -14.90056 -14.42673 -14.28614 -13.95127 -13.67863 -13.25880 -13.03143 -12.82951 -12.41890 -12.29103 -12.02843 -11.67346 -11.32265 -11.11608 -10.89670 -10.81139 -10.45499 -10.43745 -10.27789 -10.24580 -10.14391 -10.08252 -9.99108 -9.65863 -9.21194 -8.89488 -8.24614 -6.93346 -5.75768 -3.03748 -0.14635 0.70691 1.30178 1.31962 3.13232 3.16009 3.43853 3.50034 3.51874 3.69182 4.50232 4.59802 4.62027 5.02663 5.29354 5.44732 5.47292 5.64135 5.72189 5.86620 5.91551 5.95017 6.17202 6.24652 6.35519 6.48429 6.51221 6.56169 6.61885 6.76859 6.82931 7.01456 7.04081 7.30819 7.64357 7.72532 8.18293 8.42944 9.54580 10.11927 10.47111 11.46859 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.004123 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.797654 B = 6788.871719 C = 7111.864696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 H 0.062 0.938 4 C 0.068 3.932 5 N -0.574 5.574 6 C 0.593 3.407 7 O -0.541 6.541 8 C -0.010 4.010 9 C -0.240 4.240 10 S 0.455 5.545 11 N -0.293 5.293 12 N -0.202 5.202 13 C 0.118 3.882 14 C -0.148 4.148 15 C 0.176 3.824 16 H 0.050 0.950 17 N -0.718 5.718 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.293 1.293 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.141 0.859 30 H 0.077 0.923 31 H 0.208 0.792 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.384 0.616 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.493 14.500 -13.144 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 H 0.080 0.920 4 C -0.055 4.055 5 N -0.303 5.303 6 C 0.375 3.625 7 O -0.419 6.419 8 C -0.156 4.156 9 C -0.397 4.397 10 S 0.591 5.409 11 N -0.273 5.273 12 N -0.071 5.071 13 C -0.003 4.003 14 C -0.189 4.189 15 C 0.066 3.934 16 H 0.068 0.932 17 N -0.361 5.361 18 C -0.367 4.367 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.735 3.265 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.220 1.220 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.157 0.843 30 H 0.095 0.905 31 H 0.225 0.775 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.219 0.781 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.458 14.789 -13.814 20.722 hybrid contribution 0.973 -1.351 1.695 2.376 sum 5.431 13.438 -12.119 18.893 Atomic orbital electron populations 1.21645 0.94171 1.03202 1.00339 1.21659 0.96552 0.98553 0.95741 0.91992 1.23118 0.77544 1.03229 1.01644 1.48031 1.08055 1.56895 1.17366 1.16762 0.85845 0.78901 0.80945 1.90797 1.13285 1.58553 1.79227 1.22899 0.88542 1.04351 0.99853 1.28848 1.09131 1.03485 0.98227 1.81437 0.91544 1.42255 1.25659 1.78759 1.25687 1.16463 1.06352 1.71410 1.12633 1.13602 1.09471 1.21797 0.97703 0.98376 0.82429 1.22599 1.00307 0.98598 0.97390 1.20254 0.90812 0.87409 0.94951 0.93196 1.42480 1.78929 1.07699 1.06947 1.19275 1.36916 0.93880 0.86618 0.91213 1.24696 1.02369 0.97178 0.96573 1.69662 1.51879 1.12955 1.23603 0.86166 0.77231 0.79989 0.83087 1.20655 1.22017 1.22012 0.91039 0.92967 0.93665 0.84338 0.90474 0.77534 0.89508 0.90211 0.93381 0.90666 0.78084 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.06 37.15 0.34 -1.89 16 2 C -0.10 -1.76 2.67 -90.50 -0.24 -2.00 16 3 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.07 1.16 5.25 -3.71 -0.02 1.14 16 5 N -0.57 -9.93 2.97 -173.77 -0.52 -10.44 16 6 C 0.59 9.88 7.68 -12.51 -0.10 9.78 16 7 O -0.54 -9.98 16.23 5.27 0.09 -9.90 16 8 C -0.01 -0.14 6.69 -83.78 -0.56 -0.70 16 9 C -0.24 -2.31 11.22 30.64 0.34 -1.97 16 10 S 0.46 3.45 23.38 -107.50 -2.51 0.94 16 11 N -0.29 -3.51 12.49 60.35 0.75 -2.75 16 12 N -0.20 -2.82 7.79 32.74 0.26 -2.56 16 13 C 0.12 2.16 6.19 -3.49 -0.02 2.14 16 14 C -0.15 -2.64 5.80 -26.39 -0.15 -2.79 16 15 C 0.18 3.40 2.53 -67.89 -0.17 3.23 16 16 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 17 N -0.72 -16.93 3.64 -53.39 -0.19 -17.12 16 18 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 22 Si 0.90 22.14 29.55 -169.99 -5.02 17.11 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H 0.07 1.36 7.54 -51.93 -0.39 0.97 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.14 2.22 3.59 -145.80 -0.52 1.70 16 30 H 0.08 1.48 6.64 -51.93 -0.34 1.14 16 31 H 0.21 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.09 1.81 7.74 -51.93 -0.40 1.40 16 33 H 0.08 1.42 7.02 -51.93 -0.36 1.05 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.38 9.69 5.93 -40.82 -0.24 9.45 16 37 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 314.36 15.07 4.74 4.74 Total: -1.00 -31.16 314.36 -7.29 -38.45 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.77 Total: 8.25 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -0.83 Total: 0.08 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 1.02 Total: -59.67 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -2.51 Total: 0.94 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.16 -7.29 -38.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036128147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.611 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds