Wall clock time and date at job start Tue Mar 31 2020 07:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.49917 * 2 1 4 4 C 1.53197 * 109.49762 * 239.93266 * 2 1 3 5 5 N 1.46918 * 108.77703 * 185.38144 * 4 2 1 6 6 C 1.34777 * 120.63012 * 233.59150 * 5 4 2 7 7 O 1.21607 * 120.00122 * 183.02741 * 6 5 4 8 8 C 1.47444 * 120.00061 * 2.75033 * 6 5 4 9 9 C 1.37990 * 124.15620 * 172.85897 * 8 6 5 10 10 S 1.72098 * 104.03295 * 179.97438 * 9 8 6 11 11 N 1.56404 * 96.15640 * 359.97438 * 10 9 8 12 12 N 1.27420 * 109.87583 * 359.76483 * 11 10 9 13 13 C 1.46922 * 118.73901 * 53.86225 * 5 4 2 14 14 C 1.53625 * 108.54637 * 306.09273 * 13 5 4 15 15 C 1.53040 * 109.23806 * 54.85426 * 14 13 5 16 16 H 1.08996 * 109.46211 * 178.49437 * 15 14 13 17 17 N 1.46496 * 109.45975 * 58.53640 * 15 14 13 18 18 C 1.36935 * 120.00506 * 84.92856 * 17 15 14 19 19 H 1.07996 * 119.99625 * 0.02562 * 18 17 15 20 20 C 1.38815 * 120.00404 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99787 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99960 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47392 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47241 * 120.00609 * 22 20 18 25 25 H 1.48501 * 109.46989 * 240.00243 * 22 20 18 26 26 H 1.09004 * 109.47205 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46878 * 300.06664 * 1 2 3 28 28 H 1.09001 * 109.47523 * 60.06540 * 1 2 3 29 29 H 1.09001 * 109.57963 * 65.59349 * 4 2 1 30 30 H 1.08994 * 109.58629 * 305.17175 * 4 2 1 31 31 H 1.08005 * 127.98188 * 359.97438 * 9 8 6 32 32 H 1.09001 * 109.58824 * 65.92815 * 13 5 4 33 33 H 1.09006 * 109.58630 * 186.35321 * 13 5 4 34 34 H 1.09003 * 109.63713 * 294.86785 * 14 13 5 35 35 H 1.08997 * 109.46041 * 174.73849 * 14 13 5 36 36 H 0.97009 * 119.99853 * 264.92789 * 17 15 14 37 37 H 0.96997 * 119.99988 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5045 -0.8282 -1.1702 6 6 4.2806 -0.3850 -2.1791 7 8 5.4871 -0.5271 -2.1258 8 6 3.6661 0.2667 -3.3503 9 6 4.3806 0.8763 -4.3612 10 16 3.1693 1.4514 -5.4401 11 7 1.9478 0.9285 -4.6150 12 7 2.3570 0.3336 -3.5651 13 6 4.1056 -1.4307 0.0274 14 6 3.5715 -0.6943 1.2654 15 6 2.0415 -0.7230 1.2481 16 1 1.6588 -0.2247 2.1388 17 7 1.5796 -2.1132 1.2306 18 6 1.4501 -2.8065 2.4043 19 1 1.6880 -2.3284 3.3430 20 6 1.0119 -4.1236 2.3878 21 7 0.7215 -4.7062 1.2438 22 14 0.8346 -5.0691 3.9890 23 1 1.2205 -4.1948 5.1255 24 1 -0.5762 -5.5017 4.1547 25 1 1.7180 -6.2624 3.9596 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5149 0.8894 28 1 -0.3634 0.5128 -0.8906 29 1 1.7631 -0.1576 -2.1389 30 1 1.6056 -1.7214 -1.2982 31 1 5.4525 0.9708 -4.4540 32 1 3.8349 -2.4852 0.0811 33 1 5.1902 -1.3316 -0.0187 34 1 3.9160 0.3398 1.2535 35 1 3.9345 -1.1884 2.1666 36 1 1.3655 -2.5425 0.3875 37 1 0.4157 -5.6266 1.2322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036128147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:16 Heat of formation + Delta-G solvation = 46.159348 kcal Electronic energy + Delta-G solvation = -22353.917412 eV Core-core repulsion = 19066.093636 eV Total energy + Delta-G solvation = -3287.823776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.40126 -40.79508 -39.15102 -35.90840 -34.26801 -33.58623 -32.80153 -31.06536 -28.40829 -27.44274 -26.83213 -25.57217 -24.07611 -22.72085 -21.67749 -20.38930 -19.42207 -19.27694 -17.64464 -17.31375 -17.15979 -16.60107 -16.42811 -15.90860 -15.87788 -15.53363 -14.99794 -14.77420 -14.49876 -14.30186 -13.80159 -13.51229 -13.07051 -13.00052 -12.88646 -12.83002 -12.64815 -12.44266 -12.08113 -11.98573 -11.87543 -11.61915 -11.47519 -11.28950 -11.15017 -10.92049 -10.88248 -10.43798 -9.67790 -8.92304 -7.88836 -5.15014 -0.92191 -0.03273 0.27656 0.52969 1.48435 1.49217 1.58314 1.90423 1.96367 2.59613 2.67561 3.44853 3.50400 3.63002 3.87561 3.93822 4.13232 4.17090 4.31684 4.34293 4.44137 4.54372 4.66342 4.81682 4.95893 5.06354 5.13416 5.14474 5.17633 5.27020 5.32751 5.52959 5.60870 5.64310 6.24136 6.33284 6.46982 6.90546 7.40478 8.17092 8.40935 9.34881 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.004123 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.797654 B = 6788.871719 C = 7111.864696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.076 3.924 5 N -0.581 5.581 6 C 0.594 3.406 7 O -0.564 6.564 8 C -0.041 4.041 9 C -0.236 4.236 10 S 0.583 5.417 11 N -0.335 5.335 12 N -0.233 5.233 13 C 0.125 3.875 14 C -0.138 4.138 15 C 0.170 3.830 16 H 0.049 0.951 17 N -0.724 5.724 18 C -0.227 4.227 19 H 0.075 0.925 20 C -0.074 4.074 21 N -0.970 5.970 22 Si 0.965 3.035 23 H -0.267 1.267 24 H -0.298 1.298 25 H -0.299 1.299 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.159 0.841 30 H 0.044 0.956 31 H 0.231 0.769 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.373 0.627 37 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.197 17.146 -14.446 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.117 4.117 3 H 0.103 0.897 4 C -0.048 4.048 5 N -0.310 5.310 6 C 0.378 3.622 7 O -0.444 6.444 8 C -0.188 4.188 9 C -0.393 4.393 10 S 0.719 5.281 11 N -0.314 5.314 12 N -0.100 5.100 13 C 0.003 3.997 14 C -0.178 4.178 15 C 0.061 3.939 16 H 0.067 0.933 17 N -0.365 5.365 18 C -0.359 4.359 19 H 0.093 0.907 20 C -0.266 4.266 21 N -0.621 5.621 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.225 1.225 25 H -0.227 1.227 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.175 0.825 30 H 0.063 0.937 31 H 0.247 0.753 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.207 0.793 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.169 17.486 -15.098 23.673 hybrid contribution 0.839 -2.001 1.875 2.868 sum 6.007 15.485 -13.223 21.230 Atomic orbital electron populations 1.21564 0.93858 1.01427 1.01775 1.21608 0.96733 0.99148 0.94185 0.89701 1.23099 0.77268 1.01713 1.02715 1.48027 1.08186 1.57322 1.17442 1.17106 0.85558 0.78211 0.81305 1.90768 1.14219 1.59504 1.79896 1.22498 0.89351 1.06727 1.00181 1.29259 1.10958 1.01551 0.97484 1.81026 0.87727 1.37868 1.21526 1.78326 1.28582 1.17626 1.06909 1.71234 1.12900 1.14923 1.10990 1.21547 0.97960 0.96646 0.83545 1.22457 0.98884 0.99819 0.96672 1.20481 0.91697 0.85370 0.96332 0.93314 1.42596 1.78980 1.09291 1.05635 1.19633 1.34600 0.93975 0.87708 0.90700 1.25400 1.03586 0.98382 0.99218 1.69820 1.53971 1.12817 1.25526 0.85187 0.76469 0.78525 0.80289 1.19119 1.22538 1.22685 0.94330 0.92305 0.91415 0.82521 0.93738 0.75259 0.93016 0.89795 0.90878 0.91691 0.79304 0.94390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.06 71.98 0.65 -3.50 16 2 C -0.10 -3.19 2.67 -10.72 -0.03 -3.22 16 3 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.08 2.60 5.25 86.37 0.45 3.05 16 5 N -0.58 -20.28 2.97 -821.93 -2.44 -22.72 16 6 C 0.59 19.52 7.68 86.67 0.67 20.19 16 7 O -0.56 -20.57 16.23 -4.05 -0.07 -20.64 16 8 C -0.04 -1.05 6.69 41.36 0.28 -0.77 16 9 C -0.24 -3.80 11.22 67.76 0.76 -3.04 16 10 S 0.58 6.51 23.38 -56.49 -1.32 5.19 16 11 N -0.33 -7.18 12.49 37.02 0.46 -6.72 16 12 N -0.23 -6.16 7.79 -50.34 -0.39 -6.56 16 13 C 0.13 4.69 6.19 86.51 0.54 5.22 16 14 C -0.14 -4.88 5.80 30.82 0.18 -4.70 16 15 C 0.17 6.56 2.53 45.02 0.11 6.68 16 16 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 17 N -0.72 -35.14 3.64 -322.82 -1.17 -36.31 16 18 C -0.23 -12.28 9.93 84.03 0.83 -11.45 16 19 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 20 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 21 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 22 Si 0.96 46.43 29.55 68.60 2.03 48.46 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 25 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 26 H 0.04 1.50 7.54 -2.39 -0.02 1.48 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.16 4.99 3.59 -123.72 -0.44 4.54 16 30 H 0.04 1.81 6.64 -2.39 -0.02 1.80 16 31 H 0.23 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.05 2.28 7.74 -2.39 -0.02 2.26 16 33 H 0.08 3.03 7.02 -2.38 -0.02 3.02 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.37 19.80 5.93 -92.70 -0.55 19.25 16 37 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -69.72 314.36 2.42 -67.30 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.13 Total: 26.36 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 4.91 Total: 4.72 kcal Atomic # 7 Polarization: -128.14 SS G_CDS: -3.26 Total: -131.39 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.07 Total: -20.64 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Atomic # 16 Polarization: 6.51 SS G_CDS: -1.32 Total: 5.19 kcal Total: -69.72 2.42 -67.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036128147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.464 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds