Wall clock time and date at job start Tue Mar 31 2020 07:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.52794 * 2 1 4 4 C 1.53192 * 109.49511 * 120.08746 * 2 1 3 5 5 N 1.46925 * 108.89336 * 174.65652 * 4 2 1 6 6 C 1.34773 * 120.63374 * 126.29276 * 5 4 2 7 7 O 1.21603 * 119.99745 * 352.12565 * 6 5 4 8 8 C 1.47445 * 120.00220 * 172.11816 * 6 5 4 9 9 C 1.37983 * 124.15569 * 172.17889 * 8 6 5 10 10 S 1.72106 * 104.03207 * 180.02562 * 9 8 6 11 11 N 1.56402 * 96.15669 * 359.97438 * 10 9 8 12 12 N 1.27423 * 109.87455 * 359.73097 * 11 10 9 13 13 C 1.46935 * 118.73537 * 306.32037 * 5 4 2 14 14 C 1.53190 * 108.77776 * 53.60626 * 13 5 4 15 15 C 1.53039 * 109.31468 * 305.36465 * 14 13 5 16 16 H 1.08997 * 109.46275 * 181.37388 * 15 14 13 17 17 N 1.46504 * 109.46022 * 301.35034 * 15 14 13 18 18 C 1.36943 * 119.99263 * 274.99719 * 17 15 14 19 19 H 1.07996 * 120.00075 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99453 * 180.02562 * 18 17 15 21 21 N 1.31621 * 120.00396 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99853 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47256 * 59.99596 * 22 20 18 24 24 H 1.48502 * 109.47248 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47104 * 299.99711 * 22 20 18 26 26 H 1.09002 * 109.47333 * 299.91964 * 1 2 3 27 27 H 1.09003 * 109.46950 * 59.91373 * 1 2 3 28 28 H 1.09003 * 109.47598 * 179.91347 * 1 2 3 29 29 H 1.08993 * 109.59113 * 54.79491 * 4 2 1 30 30 H 1.09003 * 109.58397 * 294.51009 * 4 2 1 31 31 H 1.07998 * 127.98382 * 359.97185 * 9 8 6 32 32 H 1.09000 * 109.58132 * 173.39869 * 13 5 4 33 33 H 1.09004 * 109.58227 * 293.67370 * 13 5 4 34 34 H 1.09001 * 109.49671 * 65.31921 * 14 13 5 35 35 H 1.08997 * 109.49431 * 185.38055 * 14 13 5 36 36 H 0.96992 * 120.00461 * 94.99170 * 17 15 14 37 37 H 0.96994 * 120.00072 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7240 1.2495 5 7 3.5047 -0.8292 1.1730 6 6 4.2789 -0.3847 2.1826 7 8 3.7816 0.2367 3.1020 8 6 5.7289 -0.6518 2.1725 9 6 6.6228 -0.1101 3.0734 10 16 8.1437 -0.7560 2.5920 11 7 7.5969 -1.5947 1.3903 12 7 6.3344 -1.4483 1.2988 13 6 4.1082 -1.4279 -0.0255 14 6 3.5766 -0.6974 -1.2626 15 6 2.0465 -0.7256 -1.2485 16 1 1.6658 -0.2277 -2.1403 17 7 1.5841 -2.1156 -1.2306 18 6 1.4553 -2.8094 -2.4042 19 1 1.6950 -2.3320 -3.3428 20 6 1.0166 -4.1263 -2.3873 21 7 0.7249 -4.7082 -1.2434 22 14 0.8416 -5.0730 -3.9881 23 1 2.1597 -5.1425 -4.6687 24 1 0.3607 -6.4481 -3.7000 25 1 -0.1340 -4.3811 -4.8683 26 1 -0.3634 0.5126 0.8907 27 1 -0.3633 0.5152 -0.8892 28 1 -0.3634 -1.0277 -0.0016 29 1 1.6052 -1.7217 1.2979 30 1 1.7616 -0.1594 2.1390 31 1 6.4159 0.5643 3.8911 32 1 5.1924 -1.3257 0.0215 33 1 3.8427 -2.4837 -0.0797 34 1 3.9216 0.3365 -1.2509 35 1 3.9417 -1.1926 -2.1623 36 1 1.3692 -2.5445 -0.3876 37 1 0.4188 -5.6285 -1.2316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036128150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:20 Heat of formation + Delta-G solvation = 64.580078 kcal Electronic energy + Delta-G solvation = -22288.643045 eV Core-core repulsion = 19001.618052 eV Total energy + Delta-G solvation = -3287.024993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.32999 -39.56080 -37.67728 -34.30323 -32.91408 -32.11126 -31.35929 -29.13517 -27.73221 -26.16589 -25.20894 -23.51611 -22.72841 -21.61854 -20.66197 -19.04949 -18.04973 -17.30103 -16.38860 -16.25993 -16.00211 -15.40570 -14.91570 -14.39425 -14.31680 -13.96120 -13.58002 -13.26795 -13.07358 -12.73592 -12.50422 -12.26739 -12.06172 -11.55749 -11.36568 -11.17860 -10.88835 -10.74156 -10.70842 -10.47238 -10.24145 -10.19533 -10.14593 -10.08497 -9.80639 -9.59930 -9.48565 -8.85705 -8.25670 -6.93422 -5.75213 -3.03335 -0.10877 0.74654 1.35806 1.36423 3.12604 3.14797 3.45208 3.50285 3.50660 3.75510 4.53740 4.61050 4.65276 5.05411 5.28042 5.35049 5.43078 5.66617 5.68178 5.84472 5.90402 5.96983 6.07282 6.16344 6.29615 6.43262 6.49044 6.54538 6.64479 6.78711 6.81432 6.98005 7.02617 7.34473 7.63074 7.71917 8.16717 8.43407 9.54934 10.11673 10.46819 11.47317 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.018599 B = 0.004608 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.076777 B = 6074.563302 C = 7052.951950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.118 3.882 5 N -0.577 5.577 6 C 0.596 3.404 7 O -0.542 6.542 8 C -0.013 4.013 9 C -0.239 4.239 10 S 0.448 5.552 11 N -0.292 5.292 12 N -0.198 5.198 13 C 0.090 3.910 14 C -0.148 4.148 15 C 0.177 3.823 16 H 0.051 0.949 17 N -0.718 5.718 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.933 5.933 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.207 0.793 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.383 0.617 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.535 11.221 8.819 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.004 4.004 5 N -0.306 5.306 6 C 0.378 3.622 7 O -0.420 6.420 8 C -0.159 4.159 9 C -0.396 4.396 10 S 0.584 5.416 11 N -0.272 5.272 12 N -0.068 5.068 13 C -0.032 4.032 14 C -0.190 4.190 15 C 0.067 3.933 16 H 0.069 0.931 17 N -0.360 5.360 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.214 1.214 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.224 0.776 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.219 0.781 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.674 10.507 8.252 19.117 hybrid contribution -1.500 -0.198 -0.224 1.530 sum 12.174 10.309 8.028 17.858 Atomic orbital electron populations 1.21660 0.94086 1.03246 1.00470 1.21756 0.96537 0.98834 0.95636 0.91558 1.21778 0.77706 1.01958 0.98986 1.48009 1.07173 1.57650 1.17790 1.16734 0.82640 0.79795 0.82993 1.90788 1.73170 1.41423 1.36571 1.22835 0.98485 0.99596 0.95026 1.28842 0.98064 1.06849 1.05888 1.81439 1.12374 1.28601 1.19206 1.78796 1.07942 1.22064 1.18363 1.71718 0.99385 1.15141 1.20521 1.22584 0.99652 0.98691 0.82318 1.22530 1.00144 0.98476 0.97814 1.20300 0.90952 0.87343 0.94722 0.93149 1.42450 1.78947 1.07694 1.06936 1.19174 1.37120 0.93924 0.86570 0.91316 1.24688 1.02309 0.97145 0.96562 1.69635 1.51719 1.13100 1.23709 0.86315 0.77737 0.79215 0.83177 1.21360 1.21830 1.21401 0.93726 0.92745 0.90983 0.90137 0.89611 0.77592 0.86846 0.89609 0.93672 0.90642 0.78133 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.07 37.16 0.34 -1.86 16 2 C -0.11 -1.79 2.69 -90.33 -0.24 -2.03 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 2.02 5.42 -3.71 -0.02 2.00 16 5 N -0.58 -9.91 2.97 -174.02 -0.52 -10.43 16 6 C 0.60 9.91 7.66 -12.51 -0.10 9.81 16 7 O -0.54 -9.79 16.24 5.27 0.09 -9.71 16 8 C -0.01 -0.18 6.61 -83.78 -0.55 -0.74 16 9 C -0.24 -2.40 11.22 30.64 0.34 -2.05 16 10 S 0.45 3.67 23.38 -107.50 -2.51 1.16 16 11 N -0.29 -3.76 12.49 60.35 0.75 -3.01 16 12 N -0.20 -2.94 7.97 32.74 0.26 -2.68 16 13 C 0.09 1.61 5.75 -3.71 -0.02 1.59 16 14 C -0.15 -2.63 5.78 -26.61 -0.15 -2.79 16 15 C 0.18 3.40 2.54 -67.72 -0.17 3.23 16 16 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 17 N -0.72 -16.83 3.65 -53.22 -0.19 -17.03 16 18 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 22 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.34 7.55 -51.93 -0.39 0.95 16 29 H 0.08 1.52 6.64 -51.93 -0.34 1.17 16 30 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 31 H 0.21 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.11 1.93 4.15 -87.95 -0.36 1.56 16 33 H 0.09 1.79 7.74 -51.93 -0.40 1.39 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.38 9.60 5.93 -40.82 -0.24 9.36 16 37 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 314.80 15.07 4.74 4.74 Total: -1.00 -31.00 314.80 -7.12 -38.12 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -4.61 Total: 8.17 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.82 Total: 0.32 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 1.03 Total: -59.89 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -2.51 Total: 1.16 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.00 -7.12 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036128150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.699 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds