Wall clock time and date at job start Tue Mar 31 2020 07:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.52799 * 2 1 4 4 C 1.53188 * 109.50000 * 120.08331 * 2 1 3 5 5 N 1.46921 * 108.77815 * 174.58310 * 4 2 1 6 6 C 1.34774 * 120.63126 * 126.41408 * 5 4 2 7 7 O 1.21604 * 120.00338 * 352.10936 * 6 5 4 8 8 C 1.47455 * 120.00083 * 172.11532 * 6 5 4 9 9 C 1.37984 * 124.15441 * 172.20270 * 8 6 5 10 10 S 1.72100 * 104.03192 * 179.97438 * 9 8 6 11 11 N 1.56409 * 96.15531 * 359.97438 * 10 9 8 12 12 N 1.27418 * 109.87233 * 359.72802 * 11 10 9 13 13 C 1.46924 * 118.73784 * 306.39109 * 5 4 2 14 14 C 1.53191 * 108.77798 * 53.60868 * 13 5 4 15 15 C 1.53043 * 109.30819 * 305.36413 * 14 13 5 16 16 H 1.08997 * 109.46117 * 301.35354 * 15 14 13 17 17 N 1.46500 * 109.45725 * 181.38310 * 15 14 13 18 18 C 1.36942 * 119.99934 * 85.00319 * 17 15 14 19 19 H 1.07997 * 120.00000 * 359.97438 * 18 17 15 20 20 C 1.38808 * 119.99820 * 180.02562 * 18 17 15 21 21 N 1.31615 * 120.00346 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99693 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46836 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46817 * 299.99088 * 22 20 18 25 25 H 1.48496 * 109.47493 * 59.99647 * 22 20 18 26 26 H 1.08995 * 109.47603 * 180.08572 * 1 2 3 27 27 H 1.09008 * 109.46816 * 300.08337 * 1 2 3 28 28 H 1.08998 * 109.47254 * 60.07729 * 1 2 3 29 29 H 1.09003 * 109.59033 * 54.79356 * 4 2 1 30 30 H 1.09004 * 109.58472 * 294.37276 * 4 2 1 31 31 H 1.07993 * 127.98556 * 0.02847 * 9 8 6 32 32 H 1.09005 * 109.58816 * 293.81972 * 13 5 4 33 33 H 1.09002 * 109.70568 * 173.46570 * 13 5 4 34 34 H 1.08994 * 109.49715 * 185.41660 * 14 13 5 35 35 H 1.08993 * 109.49890 * 65.31312 * 14 13 5 36 36 H 0.96997 * 120.00575 * 264.99867 * 17 15 14 37 37 H 0.96998 * 120.00073 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 3.5046 -0.8292 1.1695 6 6 4.2811 -0.3866 2.1781 7 8 3.7860 0.2335 3.0997 8 6 5.7311 -0.6540 2.1643 9 6 6.6270 -0.1144 3.0644 10 16 8.1465 -0.7607 2.5792 11 7 7.5968 -1.5970 1.3772 12 7 6.3344 -1.4496 1.2882 13 6 4.1052 -1.4268 -0.0309 14 6 3.5707 -0.6951 -1.2661 15 6 2.0407 -0.7232 -1.2484 16 1 1.6966 -1.7573 -1.2351 17 7 1.5264 -0.0530 -2.4453 18 6 1.3949 -0.7496 -3.6169 19 1 1.6706 -1.7930 -3.6586 20 6 0.9081 -0.1145 -4.7511 21 7 0.5724 1.1571 -4.7004 22 14 0.7280 -1.0650 -6.3491 23 1 0.1906 -0.1660 -7.4019 24 1 2.0549 -1.5824 -6.7694 25 1 -0.2052 -2.2022 -6.1463 26 1 -0.3634 -1.0276 0.0015 27 1 -0.3633 0.5152 0.8893 28 1 -0.3634 0.5126 -0.8907 29 1 1.6052 -1.7216 1.2980 30 1 1.7638 -0.1579 2.1389 31 1 6.4220 0.5576 3.8845 32 1 3.8374 -2.4820 -0.0869 33 1 5.1897 -1.3269 0.0122 34 1 3.9332 -1.1898 -2.1671 35 1 3.9158 0.3387 -1.2542 36 1 1.2790 0.8842 -2.4079 37 1 0.2319 1.6009 -5.4929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036128153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:24 Heat of formation + Delta-G solvation = 61.756638 kcal Electronic energy + Delta-G solvation = -21871.872400 eV Core-core repulsion = 18584.724973 eV Total energy + Delta-G solvation = -3287.147427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.45913 -39.65209 -37.68141 -34.65643 -32.98975 -32.20209 -31.43927 -29.31127 -27.85178 -26.28196 -25.20132 -23.47581 -22.32863 -21.61948 -20.74039 -19.63131 -18.57630 -17.06787 -16.56369 -16.39975 -16.16249 -15.53675 -14.93519 -14.79431 -14.13550 -13.86473 -13.72515 -13.35447 -13.17208 -12.78474 -12.43585 -12.37511 -12.12048 -11.73876 -11.58933 -11.16823 -10.91034 -10.82086 -10.68693 -10.44247 -10.35828 -10.28182 -10.23661 -10.20631 -9.90402 -9.66303 -9.57549 -8.85058 -8.51881 -6.93658 -5.75485 -3.03923 -0.21809 0.63661 1.21691 1.24817 2.93034 3.01049 3.44666 3.49454 3.50024 3.60521 4.40909 4.51583 4.59751 4.95021 5.20456 5.25690 5.36633 5.48850 5.60131 5.70827 5.78210 5.85770 6.04419 6.08282 6.26340 6.37587 6.40853 6.45956 6.54085 6.66655 6.85592 6.93580 7.09392 7.19373 7.42485 7.70770 7.99779 8.42930 9.54266 10.11851 10.46900 11.47054 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.022258 B = 0.003822 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.697107 B = 7323.681515 C = 8238.635910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.119 3.881 5 N -0.583 5.583 6 C 0.599 3.401 7 O -0.536 6.536 8 C -0.015 4.015 9 C -0.238 4.238 10 S 0.456 5.544 11 N -0.293 5.293 12 N -0.202 5.202 13 C 0.083 3.917 14 C -0.150 4.150 15 C 0.182 3.818 16 H 0.049 0.951 17 N -0.721 5.721 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.292 1.292 24 H -0.286 1.286 25 H -0.286 1.286 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.208 0.792 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.384 0.616 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.092 -3.434 17.695 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.003 4.003 5 N -0.313 5.313 6 C 0.382 3.618 7 O -0.413 6.413 8 C -0.161 4.161 9 C -0.395 4.395 10 S 0.592 5.408 11 N -0.273 5.273 12 N -0.073 5.073 13 C -0.041 4.041 14 C -0.191 4.191 15 C 0.072 3.928 16 H 0.067 0.933 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.213 1.213 25 H -0.213 1.213 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.225 0.775 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.217 0.783 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.222 -4.171 17.139 22.659 hybrid contribution -1.485 0.474 -0.587 1.665 sum 12.737 -3.698 16.553 21.211 Atomic orbital electron populations 1.21658 0.93974 1.01809 1.01905 1.21741 0.96646 1.00075 0.94510 0.91162 1.21842 0.77524 1.01188 0.99730 1.48015 1.07207 1.58429 1.17654 1.16736 0.82653 0.79567 0.82888 1.90806 1.73270 1.40848 1.36364 1.22789 0.98406 0.99887 0.95057 1.28869 0.98073 1.06682 1.05900 1.81489 1.12228 1.28424 1.18618 1.78746 1.07775 1.22293 1.18464 1.71646 0.99615 1.15574 1.20422 1.22722 1.00978 0.97052 0.83320 1.22681 1.00024 1.00266 0.96141 1.20235 0.90546 0.95680 0.86338 0.93343 1.42399 1.76547 1.11362 1.05783 1.19188 1.35866 0.94091 0.87748 0.91258 1.24713 1.02112 0.95996 0.98002 1.69647 1.50067 1.09476 1.28974 0.86302 0.77750 0.78716 0.83617 1.21776 1.21320 1.21308 0.93002 0.93789 0.90677 0.91042 0.89159 0.77496 0.91387 0.86209 0.90460 0.92516 0.78251 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.03 37.16 0.34 -1.87 16 2 C -0.11 -1.83 2.46 -90.50 -0.22 -2.06 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.12 1.75 5.73 -3.72 -0.02 1.73 16 5 N -0.58 -8.75 2.97 -174.03 -0.52 -9.26 16 6 C 0.60 8.96 7.66 -12.51 -0.10 8.87 16 7 O -0.54 -8.96 16.24 5.27 0.09 -8.88 16 8 C -0.01 -0.19 6.61 -83.78 -0.55 -0.74 16 9 C -0.24 -2.12 11.22 30.64 0.34 -1.78 16 10 S 0.46 3.24 23.38 -107.50 -2.51 0.72 16 11 N -0.29 -3.33 12.49 60.35 0.75 -2.58 16 12 N -0.20 -2.64 7.97 32.74 0.26 -2.38 16 13 C 0.08 1.25 6.01 -3.71 -0.02 1.22 16 14 C -0.15 -2.68 5.66 -26.61 -0.15 -2.83 16 15 C 0.18 3.53 2.19 -67.89 -0.15 3.39 16 16 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 17 N -0.72 -17.55 4.41 -53.38 -0.24 -17.78 16 18 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 22 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.07 1.44 7.36 -51.93 -0.38 1.05 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 31 H 0.21 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.12 1.78 4.16 -87.44 -0.36 1.41 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.38 10.05 7.51 -40.82 -0.31 9.74 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -31.79 318.67 -7.21 -38.99 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.76 Total: 7.42 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.78 Total: -1.11 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.99 Total: -59.18 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.51 Total: 0.72 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.79 -7.21 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036128153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.750 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds