Wall clock time and date at job start Tue Mar 31 2020 07:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.52377 * 2 1 4 4 C 1.53184 * 109.50073 * 239.91614 * 2 1 3 5 5 N 1.46929 * 108.89755 * 185.48430 * 4 2 1 6 6 C 1.34776 * 120.63210 * 233.55699 * 5 4 2 7 7 O 1.21606 * 119.99798 * 172.11377 * 6 5 4 8 8 C 1.47439 * 119.99883 * 352.12162 * 6 5 4 9 9 C 1.37985 * 124.15589 * 172.18158 * 8 6 5 10 10 S 1.72099 * 104.03851 * 179.97438 * 9 8 6 11 11 N 1.56406 * 96.15038 * 359.97438 * 10 9 8 12 12 N 1.27420 * 109.87872 * 359.74741 * 11 10 9 13 13 C 1.46931 * 118.73395 * 53.53651 * 5 4 2 14 14 C 1.53187 * 108.77606 * 306.39243 * 13 5 4 15 15 C 1.53046 * 109.31293 * 54.63729 * 14 13 5 16 16 H 1.08999 * 109.45613 * 58.65581 * 15 14 13 17 17 N 1.46496 * 109.45698 * 178.62784 * 15 14 13 18 18 C 1.36942 * 120.00093 * 274.99748 * 17 15 14 19 19 H 1.08001 * 119.99855 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00104 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99902 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99706 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47132 * 60.00540 * 22 20 18 24 24 H 1.48501 * 109.46520 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47173 * 299.99882 * 22 20 18 26 26 H 1.08998 * 109.46847 * 180.08571 * 1 2 3 27 27 H 1.09001 * 109.47262 * 300.08512 * 1 2 3 28 28 H 1.09000 * 109.47226 * 60.08497 * 1 2 3 29 29 H 1.08999 * 109.58775 * 65.62193 * 4 2 1 30 30 H 1.08999 * 109.58854 * 305.34606 * 4 2 1 31 31 H 1.08005 * 127.97741 * 359.94686 * 9 8 6 32 32 H 1.08998 * 109.58551 * 66.18199 * 13 5 4 33 33 H 1.09004 * 109.58107 * 186.60542 * 13 5 4 34 34 H 1.09005 * 109.49710 * 174.58561 * 14 13 5 35 35 H 1.09001 * 109.50110 * 294.68375 * 14 13 5 36 36 H 0.97003 * 120.00250 * 95.00232 * 17 15 14 37 37 H 0.97000 * 119.99276 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5045 -0.8321 -1.1713 6 6 4.2807 -0.3909 -2.1810 7 8 5.4888 -0.3530 -2.0473 8 6 3.6649 0.0459 -3.4474 9 6 4.3557 0.6544 -4.4753 10 16 3.1552 0.9361 -5.6758 11 7 1.9647 0.3197 -4.8701 12 7 2.3784 -0.1039 -3.7419 13 6 4.1055 -1.4301 0.0287 14 6 3.5741 -0.6965 1.2641 15 6 2.0440 -0.7214 1.2484 16 1 1.6978 -1.7549 1.2365 17 7 1.5327 -0.0491 2.4454 18 6 1.4013 -0.7444 3.6178 19 1 1.6750 -1.7883 3.6601 20 6 0.9163 -0.1075 4.7519 21 7 0.5822 1.1645 4.7001 22 14 0.7365 -1.0562 6.3510 23 1 2.0631 -1.5750 6.7706 24 1 0.2024 -0.1551 7.4036 25 1 -0.1985 -2.1923 6.1501 26 1 -0.3633 -1.0277 0.0015 27 1 -0.3634 0.5152 0.8892 28 1 -0.3634 0.5125 -0.8907 29 1 1.7638 -0.1581 -2.1388 30 1 1.6033 -1.7207 -1.2993 31 1 5.4071 0.8981 -4.5167 32 1 3.8357 -2.4846 0.0857 33 1 5.1900 -1.3302 -0.0173 34 1 3.9368 -1.1913 2.1651 35 1 3.9213 0.3367 1.2511 36 1 1.2871 0.8885 2.4075 37 1 0.2437 1.6096 5.4927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036128157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:27 Heat of formation + Delta-G solvation = 61.702556 kcal Electronic energy + Delta-G solvation = -21923.576110 eV Core-core repulsion = 18636.426338 eV Total energy + Delta-G solvation = -3287.149772 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47724 -39.63115 -37.71184 -34.60725 -32.62917 -32.57210 -31.50802 -29.48615 -27.46200 -26.23892 -25.33695 -23.80945 -22.18209 -21.48199 -20.71061 -19.65680 -18.59659 -17.13575 -16.56120 -16.40376 -16.17600 -15.52782 -14.91928 -14.77134 -14.14721 -13.93939 -13.74716 -13.29515 -13.02168 -12.91608 -12.40383 -12.36392 -12.18251 -11.72597 -11.50370 -11.24254 -10.89414 -10.83226 -10.56869 -10.41123 -10.36653 -10.33054 -10.23969 -10.22192 -10.10895 -9.69650 -9.40045 -8.87161 -8.51676 -6.94082 -5.75566 -3.03967 -0.23243 0.62185 1.20293 1.23132 2.93134 3.00626 3.44583 3.49268 3.49934 3.58789 4.39501 4.50447 4.59834 4.94358 5.19586 5.29444 5.38864 5.48777 5.59803 5.74100 5.76847 5.81549 6.07893 6.17297 6.20258 6.34580 6.44544 6.47929 6.50951 6.68177 6.87155 6.93738 7.09276 7.17983 7.42081 7.70396 7.99956 8.42880 9.54170 10.11859 10.46881 11.46972 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.031765 B = 0.003571 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.265381 B = 7838.152739 C = 8378.519584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 H 0.066 0.934 4 C 0.090 3.910 5 N -0.583 5.583 6 C 0.598 3.402 7 O -0.535 6.535 8 C -0.015 4.015 9 C -0.238 4.238 10 S 0.457 5.543 11 N -0.293 5.293 12 N -0.203 5.203 13 C 0.112 3.888 14 C -0.150 4.150 15 C 0.182 3.818 16 H 0.048 0.952 17 N -0.720 5.720 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.286 1.286 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.208 0.792 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.384 0.616 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -0.991 -22.197 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 H 0.085 0.915 4 C -0.033 4.033 5 N -0.313 5.313 6 C 0.381 3.619 7 O -0.412 6.412 8 C -0.162 4.162 9 C -0.395 4.395 10 S 0.593 5.407 11 N -0.273 5.273 12 N -0.074 5.074 13 C -0.011 4.011 14 C -0.191 4.191 15 C 0.072 3.928 16 H 0.066 0.934 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.141 0.859 30 H 0.088 0.912 31 H 0.225 0.775 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.217 0.783 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.831 -0.995 -22.972 23.496 hybrid contribution 0.990 -0.373 2.113 2.363 sum 5.821 -1.368 -20.859 21.699 Atomic orbital electron populations 1.21633 0.93948 1.01864 1.01752 1.21746 0.96685 0.99840 0.94661 0.91535 1.22734 0.77471 1.02245 1.00894 1.48021 1.08009 1.58141 1.17157 1.16736 0.85843 0.78048 0.81278 1.90811 1.13264 1.55749 1.81330 1.22806 0.89379 1.04725 0.99254 1.28877 1.09114 1.03844 0.97666 1.81495 0.93298 1.43899 1.21985 1.78734 1.25575 1.17715 1.05258 1.71624 1.12287 1.16035 1.07411 1.21844 0.98999 0.96697 0.83512 1.22679 1.00135 1.00511 0.95793 1.20240 0.90410 0.95742 0.86427 0.93364 1.42397 1.76652 1.11288 1.05725 1.19187 1.35943 0.94052 0.87722 0.91275 1.24720 1.02112 0.96003 0.98013 1.69651 1.50133 1.09403 1.28953 0.86297 0.77740 0.78702 0.83614 1.21335 1.21778 1.21306 0.92967 0.90814 0.93800 0.85916 0.91185 0.77488 0.91254 0.89459 0.90435 0.92188 0.78252 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.03 37.16 0.34 -1.87 16 2 C -0.11 -1.83 2.46 -90.49 -0.22 -2.05 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.09 1.31 5.29 -3.71 -0.02 1.29 16 5 N -0.58 -8.77 2.97 -174.03 -0.52 -9.28 16 6 C 0.60 8.97 7.66 -12.51 -0.10 8.87 16 7 O -0.53 -9.06 16.24 5.27 0.09 -8.97 16 8 C -0.02 -0.19 6.61 -83.78 -0.55 -0.74 16 9 C -0.24 -2.08 11.22 30.64 0.34 -1.73 16 10 S 0.46 3.12 23.38 -107.50 -2.51 0.60 16 11 N -0.29 -3.21 12.49 60.35 0.75 -2.46 16 12 N -0.20 -2.57 7.97 32.74 0.26 -2.31 16 13 C 0.11 1.70 6.44 -3.71 -0.02 1.67 16 14 C -0.15 -2.69 5.66 -26.61 -0.15 -2.84 16 15 C 0.18 3.53 2.19 -67.87 -0.15 3.39 16 16 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 17 N -0.72 -17.55 4.41 -53.37 -0.24 -17.79 16 18 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 22 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.42 7.38 -51.93 -0.38 1.03 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.12 1.74 4.15 -87.98 -0.36 1.38 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.21 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.38 10.05 7.52 -40.82 -0.31 9.75 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 318.73 15.07 4.80 4.80 Total: -1.00 -31.82 318.73 -7.21 -39.03 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.77 Total: 7.38 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.78 Total: -1.06 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.99 Total: -59.02 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.51 Total: 0.60 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.82 -7.21 -39.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036128157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.733 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds