Wall clock time and date at job start Tue Mar 31 2020 06:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47189 * 2 1 4 4 N 1.31238 * 124.05927 * 269.97555 * 3 2 1 5 5 N 1.27332 * 120.04064 * 180.02562 * 4 3 2 6 6 S 1.56638 * 109.74076 * 359.69451 * 5 4 3 7 7 C 1.38248 * 124.05167 * 90.00192 * 3 2 1 8 8 C 1.47167 * 128.47956 * 359.97438 * 7 3 2 9 9 O 1.21625 * 119.99617 * 0.02562 * 8 7 3 10 10 N 1.34779 * 120.00155 * 179.97438 * 8 7 3 11 11 C 1.46502 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47218 * 180.02562 * 11 10 8 13 13 H 1.08997 * 112.77634 * 56.27900 * 12 11 10 14 14 C 1.53494 * 113.46603 * 187.06031 * 12 11 10 15 15 C 1.53492 * 83.34095 * 140.84733 * 14 12 11 16 16 N 1.47063 * 87.98961 * 333.93094 * 15 14 12 17 17 C 1.36936 * 136.05985 * 207.38373 * 16 15 14 18 18 H 1.08001 * 119.99969 * 173.16974 * 17 16 15 19 19 C 1.38814 * 119.99955 * 353.17158 * 17 16 15 20 20 N 1.31621 * 119.99678 * 5.03689 * 19 17 16 21 21 Si 1.86800 * 119.99880 * 185.04019 * 19 17 16 22 22 H 1.48508 * 109.46943 * 94.98498 * 21 19 17 23 23 H 1.48498 * 109.46995 * 214.98519 * 21 19 17 24 24 H 1.48493 * 109.47191 * 334.98782 * 21 19 17 25 25 H 1.09000 * 109.47375 * 299.99389 * 1 2 3 26 26 H 1.08997 * 109.47434 * 60.00078 * 1 2 3 27 27 H 1.09007 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47398 * 240.00080 * 2 1 3 29 29 H 1.09004 * 109.47384 * 120.00318 * 2 1 3 30 30 H 0.96995 * 119.99692 * 0.02562 * 10 8 7 31 31 H 1.09005 * 109.46958 * 59.99833 * 11 10 8 32 32 H 1.09007 * 109.46840 * 300.00484 * 11 10 8 33 33 H 1.08999 * 114.20581 * 254.43160 * 14 12 11 34 34 H 1.08991 * 114.20856 * 27.06350 * 14 12 11 35 35 H 1.09002 * 113.46997 * 219.14989 * 15 14 12 36 36 H 1.09001 * 113.46852 * 88.71157 * 15 14 12 37 37 H 0.97002 * 119.99494 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2777 2.1136 -1.0872 5 7 2.7016 3.3110 -0.9980 6 16 2.8356 3.7138 0.5097 7 6 2.2904 2.1506 1.1454 8 6 2.1427 1.7343 2.5492 9 8 1.7469 0.6149 2.8130 10 7 2.4470 2.5930 3.5424 11 6 2.3005 2.1783 4.9399 12 6 2.7082 3.3311 5.8594 13 1 2.1443 4.2439 5.6672 14 6 2.7544 2.9422 7.3436 15 6 4.0014 3.8371 7.3552 16 7 4.1621 3.5433 5.9232 17 6 5.2066 3.4862 5.0395 18 1 5.0438 3.1288 4.0334 19 6 6.4746 3.8879 5.4367 20 7 6.6946 4.2292 6.6887 21 14 7.8685 3.9440 4.1944 22 1 7.9900 5.3198 3.6486 23 1 9.1398 3.5611 4.8594 24 1 7.5836 2.9958 3.0877 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.7630 3.4855 3.3320 31 1 2.9395 1.3163 5.1320 32 1 1.2615 1.9104 5.1323 33 1 1.9222 3.3276 7.9327 34 1 2.9565 1.8863 7.5228 35 1 4.8106 3.4460 7.9720 36 1 3.7820 4.8847 7.5614 37 1 7.5806 4.5102 6.9662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038473407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:41 Heat of formation + Delta-G solvation = 87.366252 kcal Electronic energy + Delta-G solvation = -21602.404464 eV Core-core repulsion = 18316.367553 eV Total energy + Delta-G solvation = -3286.036911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.06034 -39.47288 -38.15998 -34.62443 -34.16742 -32.32762 -30.75624 -28.52336 -28.01559 -26.93201 -24.08519 -23.56347 -22.73075 -21.55798 -20.33981 -19.32225 -18.48444 -17.61011 -16.58632 -16.13269 -15.75266 -15.35987 -14.80315 -14.60264 -14.39956 -14.23832 -13.88604 -13.45404 -13.15215 -12.99939 -12.60613 -12.17740 -12.04447 -11.66683 -11.55629 -11.20215 -11.09490 -11.02601 -10.86756 -10.64853 -10.38622 -10.14997 -9.95112 -9.90929 -9.88683 -9.81660 -9.36041 -8.91882 -8.79374 -6.98623 -5.87871 -3.20114 -0.31729 0.76179 1.41298 1.87620 3.01907 3.16154 3.31241 3.36567 3.39145 3.78919 4.34270 4.47167 4.73331 5.03385 5.08916 5.18776 5.21980 5.29336 5.45662 5.58695 5.66349 5.79727 5.80493 5.94836 6.01578 6.12690 6.19661 6.29909 6.48598 6.54876 6.67996 7.13998 7.28555 7.47893 7.49752 7.62038 7.87046 8.16362 8.92494 9.60280 10.53283 11.29649 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.005146 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.083303 B = 5439.301837 C = 6609.638783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 C 0.098 3.902 4 N -0.252 5.252 5 N -0.261 5.261 6 S 0.425 5.575 7 C -0.284 4.284 8 C 0.597 3.403 9 O -0.522 6.522 10 N -0.702 5.702 11 C 0.122 3.878 12 C 0.125 3.875 13 H 0.050 0.950 14 C -0.160 4.160 15 C 0.154 3.846 16 N -0.601 5.601 17 C -0.220 4.220 18 H 0.079 0.921 19 C -0.002 4.002 20 N -0.913 5.913 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.281 1.281 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.403 0.597 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.777 -3.074 -7.778 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.050 4.050 4 N -0.117 5.117 5 N -0.241 5.241 6 S 0.561 5.439 7 C -0.424 4.424 8 C 0.380 3.620 9 O -0.400 6.400 10 N -0.352 5.352 11 C -0.002 4.002 12 C 0.017 3.983 13 H 0.067 0.933 14 C -0.199 4.199 15 C 0.029 3.971 16 N -0.327 5.327 17 C -0.347 4.347 18 H 0.097 0.903 19 C -0.199 4.199 20 N -0.559 5.559 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.206 1.206 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.238 0.762 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.133 -2.273 -8.803 14.374 hybrid contribution 0.730 -0.428 -0.236 0.879 sum -10.402 -2.702 -9.039 14.043 Atomic orbital electron populations 1.21654 0.93486 1.02549 1.02091 1.20282 0.96819 0.86528 1.05013 1.22936 0.97247 0.99697 0.85089 1.70590 1.13904 0.99184 1.28058 1.78825 1.18637 1.10669 1.16005 1.82809 1.45847 1.14183 1.01039 1.27901 1.14086 1.00087 1.00376 1.16441 0.78547 0.85156 0.81870 1.90780 1.46828 1.19377 1.83021 1.45900 1.65814 1.16681 1.06805 1.21960 1.00620 0.99544 0.78114 1.22451 0.88323 0.94377 0.93173 0.93272 1.23677 0.99852 1.01233 0.95183 1.21974 0.93256 0.94867 0.87031 1.45648 0.99368 1.80882 1.06846 1.18804 0.85818 1.37176 0.92915 0.90312 1.24796 0.97462 1.01180 0.96488 1.69840 1.21497 1.49990 1.14572 0.86252 0.82221 0.77810 0.80464 1.21404 1.21544 1.20596 0.92164 0.92703 0.91366 0.89626 0.87484 0.76223 0.90518 0.91616 0.92232 0.90135 0.91329 0.95447 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.89 37.16 0.37 -1.06 16 2 C -0.05 -0.53 5.95 -27.89 -0.17 -0.70 16 3 C 0.10 1.36 6.25 -82.84 -0.52 0.84 16 4 N -0.25 -3.70 11.54 33.42 0.39 -3.32 16 5 N -0.26 -3.77 12.51 60.35 0.75 -3.01 16 6 S 0.42 5.41 23.05 -107.50 -2.48 2.93 16 7 C -0.28 -4.05 6.81 -35.95 -0.24 -4.30 16 8 C 0.60 9.43 7.80 -12.63 -0.10 9.33 16 9 O -0.52 -9.14 14.89 5.26 0.08 -9.06 16 10 N -0.70 -11.02 5.33 -61.46 -0.33 -11.35 16 11 C 0.12 1.98 5.52 -4.04 -0.02 1.96 16 12 C 0.12 2.20 4.10 -72.41 -0.30 1.91 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 14 C -0.16 -2.69 8.03 -26.22 -0.21 -2.90 16 15 C 0.15 3.34 7.31 -8.53 -0.06 3.27 16 16 N -0.60 -13.80 3.65 -177.04 -0.65 -14.45 16 17 C -0.22 -5.61 10.54 -15.06 -0.16 -5.77 16 18 H 0.08 1.93 7.61 -52.49 -0.40 1.53 16 19 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 20 N -0.91 -25.90 11.63 55.49 0.65 -25.25 16 21 Si 0.90 21.26 29.56 -169.99 -5.02 16.24 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.11 1.37 6.47 -51.93 -0.34 1.03 16 30 H 0.40 6.09 7.90 -40.82 -0.32 5.77 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.34 8.12 -51.93 -0.42 0.91 16 35 H 0.07 1.67 7.32 -51.93 -0.38 1.29 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -30.10 330.18 -7.94 -38.04 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -4.80 Total: 1.81 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.51 Total: 2.44 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.81 Total: -57.38 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -2.48 Total: 2.93 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.10 -7.94 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038473407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.408 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds