Wall clock time and date at job start Tue Mar 31 2020 06:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47414 * 2 1 4 4 N 1.31240 * 124.05446 * 270.17328 * 3 2 1 5 5 N 1.27334 * 120.03640 * 180.33368 * 4 3 2 6 6 S 1.56634 * 109.74115 * 359.72053 * 5 4 3 7 7 C 1.38243 * 124.05190 * 89.99937 * 3 2 1 8 8 C 1.47170 * 128.47937 * 0.02562 * 7 3 2 9 9 O 1.21620 * 119.99936 * 359.69709 * 8 7 3 10 10 N 1.34771 * 119.99698 * 179.70236 * 8 7 3 11 11 C 1.46505 * 119.99622 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 H 1.09002 * 112.96693 * 306.67860 * 12 11 10 14 14 C 1.53944 * 113.77224 * 175.00107 * 12 11 10 15 15 C 1.53950 * 86.29079 * 222.09231 * 14 12 11 16 16 N 1.47585 * 113.77049 * 78.49995 * 12 11 10 17 17 C 1.36932 * 134.49495 * 318.94949 * 16 12 11 18 18 H 1.08007 * 119.99670 * 359.97438 * 17 16 12 19 19 C 1.38814 * 120.00453 * 179.97438 * 17 16 12 20 20 N 1.31623 * 119.99581 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00371 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47027 * 90.00203 * 21 19 17 23 23 H 1.48495 * 109.47079 * 210.00052 * 21 19 17 24 24 H 1.48506 * 109.47168 * 330.00300 * 21 19 17 25 25 H 1.09004 * 109.47470 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47109 * 300.00183 * 1 2 3 27 27 H 1.09003 * 109.47271 * 60.00188 * 1 2 3 28 28 H 1.09001 * 109.47109 * 239.99816 * 2 1 3 29 29 H 1.08996 * 109.47336 * 120.00220 * 2 1 3 30 30 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 31 31 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 32 32 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 33 33 H 1.09005 * 113.73705 * 336.43429 * 14 12 11 34 34 H 1.08994 * 113.74699 * 107.63859 * 14 12 11 35 35 H 1.08997 * 113.77044 * 137.90682 * 15 14 12 36 36 H 1.08997 * 113.76603 * 269.19409 * 15 14 12 37 37 H 0.97001 * 120.00214 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2743 2.1148 -1.0873 5 7 2.7040 3.3101 -0.9981 6 16 2.8496 3.7088 0.5096 7 6 2.2904 2.1506 1.1454 8 6 2.1436 1.7340 2.5492 9 8 1.7430 0.6163 2.8131 10 7 2.4530 2.5909 3.5423 11 6 2.3074 2.1759 4.9398 12 6 2.7224 3.3262 5.8593 13 1 3.7160 3.7135 5.6340 14 6 2.4926 3.0395 7.3542 15 6 1.9728 4.4854 7.4491 16 7 1.6922 4.3730 6.0045 17 6 0.8245 4.9914 5.1445 18 1 0.8155 4.7205 4.0990 19 6 -0.0437 5.9665 5.6163 20 7 -0.0331 6.2962 6.8905 21 14 -1.2268 6.8106 4.4430 22 1 -2.5021 6.0511 4.3945 23 1 -1.4917 8.1929 4.9165 24 1 -0.6275 6.8587 3.0851 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.7727 3.4822 3.3319 31 1 1.2677 1.9120 5.1340 32 1 2.9433 1.3114 5.1303 33 1 1.7288 2.2852 7.5440 34 1 3.4113 2.8640 7.9138 35 1 1.0786 4.5914 8.0634 36 1 2.7452 5.2148 7.6929 37 1 -0.6399 6.9772 7.2204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038473410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:44 Heat of formation + Delta-G solvation = 84.251809 kcal Electronic energy + Delta-G solvation = -21605.494479 eV Core-core repulsion = 18319.322516 eV Total energy + Delta-G solvation = -3286.171963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.07138 -39.45003 -37.98608 -34.62322 -34.17508 -32.27666 -30.75043 -28.52841 -27.95391 -26.96553 -24.08519 -23.44698 -22.80960 -21.62952 -20.35993 -19.19537 -18.49437 -17.61949 -16.59849 -16.11305 -15.77428 -15.33412 -14.82509 -14.60490 -14.40859 -14.21716 -13.86947 -13.48201 -13.09974 -13.04016 -12.59634 -12.17365 -12.02313 -11.54829 -11.50565 -11.22392 -11.09463 -11.02009 -10.81775 -10.61865 -10.40035 -10.16032 -9.92045 -9.90008 -9.83520 -9.81990 -9.51295 -8.88098 -8.83198 -6.97829 -5.84253 -3.17281 -0.33015 0.74738 1.39893 1.86497 3.00913 3.14628 3.32584 3.37107 3.39783 3.77941 4.35034 4.46292 4.71807 5.02844 5.04665 5.21559 5.24356 5.30308 5.52452 5.58175 5.68721 5.80775 5.82558 5.93712 6.04193 6.17876 6.20504 6.31224 6.49420 6.55459 6.68425 7.16645 7.32282 7.47356 7.51972 7.60657 7.90413 8.15149 8.95849 9.63188 10.50736 11.32203 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.014848 B = 0.005079 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.309067 B = 5511.310656 C = 6334.131759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C 0.098 3.902 4 N -0.252 5.252 5 N -0.261 5.261 6 S 0.423 5.577 7 C -0.284 4.284 8 C 0.597 3.403 9 O -0.521 6.521 10 N -0.703 5.703 11 C 0.123 3.877 12 C 0.124 3.876 13 H 0.051 0.949 14 C -0.154 4.154 15 C 0.159 3.841 16 N -0.602 5.602 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.281 1.281 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.402 0.598 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.925 -9.086 -8.255 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C -0.050 4.050 4 N -0.117 5.117 5 N -0.241 5.241 6 S 0.560 5.440 7 C -0.424 4.424 8 C 0.380 3.620 9 O -0.399 6.399 10 N -0.353 5.353 11 C -0.001 4.001 12 C 0.016 3.984 13 H 0.068 0.932 14 C -0.193 4.193 15 C 0.034 3.966 16 N -0.328 5.328 17 C -0.351 4.351 18 H 0.094 0.906 19 C -0.201 4.201 20 N -0.563 5.563 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.207 1.207 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.236 0.764 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.929 -8.076 -9.252 14.101 hybrid contribution -0.914 0.077 -0.225 0.944 sum 6.015 -8.000 -9.477 13.784 Atomic orbital electron populations 1.21673 0.93379 1.02603 1.02376 1.20274 0.96959 0.86440 1.04807 1.22952 0.97181 0.99743 0.85085 1.70593 1.13984 0.99084 1.28052 1.78830 1.18716 1.10590 1.15969 1.82788 1.45748 1.14389 1.01093 1.27900 1.14311 0.99855 1.00375 1.16431 0.78520 0.85188 0.81850 1.90783 1.46277 1.19827 1.83007 1.45894 1.65967 1.16547 1.06843 1.21915 1.02484 0.97694 0.77974 1.22532 0.93229 0.89115 0.93528 0.93157 1.23770 1.00107 1.00711 0.94747 1.22202 0.97844 0.89899 0.86698 1.46071 1.37758 1.43109 1.05910 1.18882 1.10688 1.15216 0.90276 0.90558 1.24741 0.99786 0.99284 0.96244 1.69809 1.39971 1.34214 1.12352 0.86253 0.81355 0.79049 0.79896 1.21507 1.21520 1.20705 0.91334 0.91952 0.92649 0.89686 0.87574 0.76356 0.90331 0.91526 0.90418 0.92692 0.90765 0.95483 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.04 -0.51 5.95 -27.88 -0.17 -0.68 16 3 C 0.10 1.35 6.25 -82.84 -0.52 0.83 16 4 N -0.25 -3.67 11.54 33.42 0.39 -3.28 16 5 N -0.26 -3.72 12.51 60.35 0.75 -2.96 16 6 S 0.42 5.30 23.05 -107.50 -2.48 2.82 16 7 C -0.28 -4.00 6.81 -35.95 -0.24 -4.24 16 8 C 0.60 9.35 7.80 -12.64 -0.10 9.25 16 9 O -0.52 -9.08 14.90 5.26 0.08 -9.00 16 10 N -0.70 -10.90 5.52 -61.47 -0.34 -11.24 16 11 C 0.12 2.01 5.54 -4.04 -0.02 1.99 16 12 C 0.12 2.18 4.33 -66.86 -0.29 1.89 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 14 C -0.15 -2.61 7.86 -25.80 -0.20 -2.81 16 15 C 0.16 3.45 7.52 -2.97 -0.02 3.43 16 16 N -0.60 -13.85 3.57 -170.71 -0.61 -14.46 16 17 C -0.22 -5.72 10.51 -15.06 -0.16 -5.88 16 18 H 0.08 1.87 7.80 -52.48 -0.41 1.46 16 19 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 20 N -0.92 -26.06 11.38 55.49 0.63 -25.43 16 21 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.11 1.30 6.47 -51.93 -0.34 0.96 16 30 H 0.40 5.93 7.90 -40.82 -0.32 5.60 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.81 7.15 -51.93 -0.37 1.44 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -30.22 330.32 -7.87 -38.09 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.80 Total: 1.70 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.45 Total: 2.35 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.82 Total: -57.37 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -2.48 Total: 2.82 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.22 -7.87 -38.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038473410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.342 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds