Wall clock time and date at job start Tue Mar 31 2020 07:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.34780 * 2 1 4 4 C 1.54594 * 110.30695 * 122.14110 * 2 1 3 5 5 C 1.54937 * 102.91918 * 140.87690 * 4 2 1 6 6 H 1.09000 * 110.66593 * 81.02457 * 5 4 2 7 7 C 1.52999 * 110.66442 * 204.14698 * 5 4 2 8 8 O 1.42898 * 109.47273 * 180.25832 * 7 5 4 9 9 N 1.48525 * 103.22830 * 322.58509 * 5 4 2 10 10 C 1.38408 * 111.00254 * 159.72471 * 9 5 4 11 11 N 1.32749 * 119.43376 * 305.33540 * 10 9 5 12 12 C 1.31476 * 121.73814 * 179.97438 * 11 10 9 13 13 C 1.40788 * 120.39054 * 359.97438 * 12 11 10 14 14 C 1.41189 * 120.56497 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00068 * 330.35191 * 14 13 12 16 16 C 1.39868 * 120.00066 * 150.34554 * 14 13 12 17 17 N 1.30909 * 119.99663 * 345.75552 * 16 14 13 18 18 Si 1.86803 * 120.00294 * 165.75425 * 16 14 13 19 19 H 1.48504 * 109.46585 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47096 * 120.00149 * 18 16 14 21 21 H 1.48506 * 109.46926 * 240.00418 * 18 16 14 22 22 C 1.41287 * 118.86985 * 0.02562 * 13 12 11 23 23 C 1.36667 * 118.40172 * 359.97438 * 22 13 12 24 24 Cl 1.73601 * 120.26246 * 180.27269 * 23 22 13 25 25 C 1.47902 * 105.82057 * 39.20704 * 9 5 4 26 26 H 1.09002 * 109.46893 * 180.68603 * 1 2 3 27 27 H 1.08996 * 109.47414 * 300.69427 * 1 2 3 28 28 H 1.09001 * 109.46716 * 60.69261 * 1 2 3 29 29 H 1.09005 * 110.72257 * 259.23093 * 4 2 1 30 30 H 1.08992 * 110.72644 * 22.33373 * 4 2 1 31 31 H 1.09004 * 109.47448 * 300.25945 * 7 5 4 32 32 H 1.09004 * 109.46999 * 60.26458 * 7 5 4 33 33 H 0.96698 * 114.00514 * 179.97438 * 8 7 5 34 34 H 1.08002 * 119.80165 * 180.02562 * 12 11 10 35 35 H 0.97004 * 119.99395 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.80006 * 179.97438 * 22 13 12 37 37 H 1.08999 * 109.91686 * 94.02633 * 25 9 5 38 38 H 1.09005 * 109.91609 * 215.31681 * 25 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0666 -0.7713 1.2276 5 6 3.2855 -1.5347 0.6515 6 1 4.1564 -0.8817 0.5942 7 6 3.5931 -2.7747 1.4933 8 8 4.7233 -3.4551 0.9439 9 7 2.8314 -1.9235 -0.7081 10 6 3.9091 -2.2087 -1.5284 11 7 4.8698 -1.3053 -1.6811 12 6 5.9136 -1.5287 -2.4486 13 6 6.0424 -2.7493 -3.1382 14 6 7.1621 -2.9934 -3.9629 15 1 7.6580 -2.1712 -4.4573 16 6 7.6291 -4.2999 -4.1396 17 7 7.2219 -5.2540 -3.3411 18 14 8.8337 -4.6833 -5.5148 19 1 9.1339 -3.4407 -6.2706 20 1 10.0887 -5.2269 -4.9363 21 1 8.2355 -5.6871 -6.4313 22 6 5.0321 -3.7260 -2.9909 23 6 3.9680 -3.4434 -2.1812 24 17 2.7027 -4.6112 -1.9599 25 6 2.0646 -0.7683 -1.2228 26 1 -0.3633 -1.0276 0.0123 27 1 -0.3634 0.5245 0.8836 28 1 -0.3633 0.5031 -0.8962 29 1 2.3791 -0.0805 2.0108 30 1 1.3161 -1.4659 1.6050 31 1 3.8131 -2.4732 2.5175 32 1 2.7302 -3.4407 1.4879 33 1 4.9760 -4.2528 1.4285 34 1 6.6772 -0.7717 -2.5499 35 1 7.5455 -6.1602 -3.4639 36 1 5.0991 -4.6729 -3.5058 37 1 2.7162 -0.1225 -1.8113 38 1 1.2328 -1.1176 -1.8346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164154521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:28 Heat of formation + Delta-G solvation = -26.091351 kcal Electronic energy + Delta-G solvation = -22355.168462 eV Core-core repulsion = 19029.875203 eV Total energy + Delta-G solvation = -3325.293259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.63973 -37.70888 -35.87140 -35.26257 -34.22990 -32.55572 -30.55906 -30.37752 -28.90998 -26.26135 -25.15501 -23.98694 -22.07255 -21.17890 -20.01843 -19.45445 -17.46243 -16.89139 -16.52913 -15.72424 -15.07676 -14.88962 -14.32258 -14.15176 -13.66639 -13.28452 -13.10884 -12.85353 -12.76239 -12.32670 -12.15033 -11.78417 -11.75104 -11.41417 -11.32811 -11.08414 -10.94693 -10.80946 -10.67712 -10.56499 -10.47428 -10.25257 -10.21744 -9.74147 -9.46816 -9.37482 -8.48329 -8.06298 -7.74772 -7.35727 -6.87178 -4.53171 2.47850 2.83429 3.01739 3.06152 3.07645 3.46404 3.83470 4.46261 4.52802 4.58153 4.96643 5.10164 5.20730 5.47156 5.58866 5.65196 5.73496 5.75881 5.81769 5.86363 5.92868 6.07153 6.14215 6.17800 6.22293 6.43353 6.52167 6.59887 6.67840 6.74359 6.95788 7.07649 7.14697 7.46654 7.66774 7.81414 8.16022 8.20937 8.39994 8.61617 8.67194 9.45405 10.04669 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.023401 B = 0.004880 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.257737 B = 5736.809213 C = 5894.928927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.112 4.112 5 C 0.072 3.928 6 H 0.071 0.929 7 C 0.096 3.904 8 O -0.548 6.548 9 N -0.435 5.435 10 C 0.164 3.836 11 N -0.475 5.475 12 C -0.006 4.006 13 C 0.077 3.923 14 C -0.449 4.449 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.786 5.786 18 Si 0.913 3.087 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.271 1.271 22 C -0.128 4.128 23 C 0.003 3.997 24 Cl -0.103 7.103 25 C 0.047 3.953 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.367 0.633 34 H 0.129 0.871 35 H 0.284 0.716 36 H 0.131 0.869 37 H 0.051 0.949 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.443 3.374 6.064 10.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.119 4.119 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.036 4.036 6 H 0.089 0.911 7 C 0.017 3.983 8 O -0.351 6.351 9 N -0.158 5.158 10 C -0.065 4.065 11 N -0.186 5.186 12 C -0.170 4.170 13 C 0.073 3.927 14 C -0.479 4.479 15 H 0.103 0.897 16 C -0.145 4.145 17 N -0.410 5.410 18 Si 0.737 3.263 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.196 1.196 22 C -0.155 4.155 23 C -0.027 4.027 24 Cl -0.075 7.075 25 C -0.081 4.081 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.212 0.788 34 H 0.146 0.854 35 H 0.095 0.905 36 H 0.149 0.851 37 H 0.070 0.930 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.965 3.824 6.156 10.768 hybrid contribution 1.191 -1.010 -0.569 1.662 sum -6.774 2.815 5.587 9.221 Atomic orbital electron populations 1.21811 0.94773 1.01949 1.01044 1.21940 0.95820 0.99000 0.95124 0.91075 1.22516 0.97130 0.98388 0.96956 1.22733 0.96769 0.94608 0.89505 0.91108 1.21995 0.88737 0.93539 0.94034 1.86756 1.48600 1.42715 1.57045 1.62334 1.18182 1.34802 1.00445 1.18441 0.93803 0.91312 1.02944 1.67035 1.02182 1.32610 1.16731 1.22347 0.96638 0.98652 0.99333 1.18414 0.92205 0.91216 0.90901 1.19501 1.10588 0.93422 1.24397 0.89658 1.25963 0.96907 0.95862 0.95811 1.69833 1.37171 1.02546 1.31476 0.86180 0.79731 0.79567 0.80848 1.18248 1.19823 1.19585 1.21213 0.91473 1.01911 1.00898 1.20966 0.91111 0.89683 1.00976 1.98241 1.53348 1.59278 1.96637 1.22922 0.97598 0.91375 0.96183 0.92232 0.93105 0.92874 0.91543 0.90875 0.94725 0.93614 0.78804 0.85374 0.90519 0.85141 0.93014 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.89 37.16 0.33 -1.21 16 2 C -0.10 -1.35 3.59 -89.27 -0.32 -1.67 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.11 -1.51 6.04 -24.87 -0.15 -1.66 16 5 C 0.07 1.26 2.65 -65.79 -0.17 1.08 16 6 H 0.07 1.43 7.32 -51.93 -0.38 1.05 16 7 C 0.10 1.55 6.75 37.16 0.25 1.80 16 8 O -0.55 -10.53 12.47 -35.23 -0.44 -10.97 16 9 N -0.44 -8.50 4.33 -161.72 -0.70 -9.20 16 10 C 0.16 3.77 4.18 -155.05 -0.65 3.13 16 11 N -0.48 -11.43 8.75 -11.75 -0.10 -11.54 16 12 C -0.01 -0.16 10.97 -16.74 -0.18 -0.34 16 13 C 0.08 2.01 5.53 -106.65 -0.59 1.42 16 14 C -0.45 -11.34 9.05 -37.85 -0.34 -11.69 16 15 H 0.09 2.04 7.88 -52.49 -0.41 1.63 16 16 C 0.07 1.77 5.20 -17.34 -0.09 1.68 16 17 N -0.79 -19.70 11.13 55.54 0.62 -19.08 16 18 Si 0.91 17.92 29.58 -169.99 -5.03 12.89 16 19 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 C -0.13 -3.30 8.48 -38.99 -0.33 -3.63 16 23 C 0.00 0.06 6.32 -39.57 -0.25 -0.19 16 24 Cl -0.10 -2.18 28.43 -51.86 -1.47 -3.65 16 25 C 0.05 0.81 6.26 -2.76 -0.02 0.79 16 26 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.37 5.44 9.12 45.56 0.42 5.85 16 34 H 0.13 2.94 8.06 -52.49 -0.42 2.52 16 35 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 36 H 0.13 3.46 6.52 -52.49 -0.34 3.12 16 37 H 0.05 0.99 7.29 -51.93 -0.38 0.62 16 38 H 0.07 1.20 7.68 -51.93 -0.40 0.80 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -28.41 326.84 -9.13 -37.54 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -4.42 Total: 9.56 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -2.52 Total: -10.48 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.18 Total: -39.82 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.44 Total: -10.97 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -1.47 Total: -3.65 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.41 -9.13 -37.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164154521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.449 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds