Wall clock time and date at job start Tue Mar 31 2020 07:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.34780 * 2 1 4 4 C 1.54594 * 110.30695 * 122.14110 * 2 1 3 5 5 C 1.54937 * 102.91918 * 140.87690 * 4 2 1 6 6 H 1.09000 * 110.66593 * 81.02457 * 5 4 2 7 7 C 1.52999 * 110.66442 * 204.14698 * 5 4 2 8 8 O 1.42898 * 109.47273 * 180.25832 * 7 5 4 9 9 N 1.48525 * 103.22830 * 322.58509 * 5 4 2 10 10 C 1.38408 * 111.00254 * 159.72471 * 9 5 4 11 11 N 1.32749 * 119.43376 * 305.33540 * 10 9 5 12 12 C 1.31476 * 121.73814 * 179.97438 * 11 10 9 13 13 C 1.40788 * 120.39054 * 359.97438 * 12 11 10 14 14 C 1.41189 * 120.56497 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00068 * 330.35191 * 14 13 12 16 16 C 1.39868 * 120.00066 * 150.34554 * 14 13 12 17 17 N 1.30909 * 119.99663 * 345.75552 * 16 14 13 18 18 Si 1.86803 * 120.00294 * 165.75425 * 16 14 13 19 19 H 1.48504 * 109.46585 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47096 * 120.00149 * 18 16 14 21 21 H 1.48506 * 109.46926 * 240.00418 * 18 16 14 22 22 C 1.41287 * 118.86985 * 0.02562 * 13 12 11 23 23 C 1.36667 * 118.40172 * 359.97438 * 22 13 12 24 24 Cl 1.73601 * 120.26246 * 180.27269 * 23 22 13 25 25 C 1.47902 * 105.82057 * 39.20704 * 9 5 4 26 26 H 1.09002 * 109.46893 * 180.68603 * 1 2 3 27 27 H 1.08996 * 109.47414 * 300.69427 * 1 2 3 28 28 H 1.09001 * 109.46716 * 60.69261 * 1 2 3 29 29 H 1.09005 * 110.72257 * 259.23093 * 4 2 1 30 30 H 1.08992 * 110.72644 * 22.33373 * 4 2 1 31 31 H 1.09004 * 109.47448 * 300.25945 * 7 5 4 32 32 H 1.09004 * 109.46999 * 60.26458 * 7 5 4 33 33 H 0.96698 * 114.00514 * 179.97438 * 8 7 5 34 34 H 1.08002 * 119.80165 * 180.02562 * 12 11 10 35 35 H 0.97004 * 119.99395 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.80006 * 179.97438 * 22 13 12 37 37 H 1.08999 * 109.91686 * 94.02633 * 25 9 5 38 38 H 1.09005 * 109.91609 * 215.31681 * 25 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0666 -0.7713 1.2276 5 6 3.2855 -1.5347 0.6515 6 1 4.1564 -0.8817 0.5942 7 6 3.5931 -2.7747 1.4933 8 8 4.7233 -3.4551 0.9439 9 7 2.8314 -1.9235 -0.7081 10 6 3.9091 -2.2087 -1.5284 11 7 4.8698 -1.3053 -1.6811 12 6 5.9136 -1.5287 -2.4486 13 6 6.0424 -2.7493 -3.1382 14 6 7.1621 -2.9934 -3.9629 15 1 7.6580 -2.1712 -4.4573 16 6 7.6291 -4.2999 -4.1396 17 7 7.2219 -5.2540 -3.3411 18 14 8.8337 -4.6833 -5.5148 19 1 9.1339 -3.4407 -6.2706 20 1 10.0887 -5.2269 -4.9363 21 1 8.2355 -5.6871 -6.4313 22 6 5.0321 -3.7260 -2.9909 23 6 3.9680 -3.4434 -2.1812 24 17 2.7027 -4.6112 -1.9599 25 6 2.0646 -0.7683 -1.2228 26 1 -0.3633 -1.0276 0.0123 27 1 -0.3634 0.5245 0.8836 28 1 -0.3633 0.5031 -0.8962 29 1 2.3791 -0.0805 2.0108 30 1 1.3161 -1.4659 1.6050 31 1 3.8131 -2.4732 2.5175 32 1 2.7302 -3.4407 1.4879 33 1 4.9760 -4.2528 1.4285 34 1 6.6772 -0.7717 -2.5499 35 1 7.5455 -6.1602 -3.4639 36 1 5.0991 -4.6729 -3.5058 37 1 2.7162 -0.1225 -1.8113 38 1 1.2328 -1.1176 -1.8346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164154521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:27 Heat of formation + Delta-G solvation = -44.312419 kcal Electronic energy + Delta-G solvation = -22355.958587 eV Core-core repulsion = 19029.875203 eV Total energy + Delta-G solvation = -3326.083384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21790 -39.34934 -37.25679 -37.06851 -35.99445 -34.00855 -32.35049 -31.87086 -30.62558 -27.58923 -26.62148 -25.49114 -23.88556 -22.95963 -21.27346 -20.83525 -19.34848 -18.37583 -17.96078 -17.48300 -16.80596 -16.41525 -15.91227 -15.55132 -15.13052 -14.91580 -14.51009 -14.14156 -14.09789 -13.95558 -13.60969 -13.53102 -13.30773 -12.95558 -12.83211 -12.54990 -12.47541 -12.45026 -12.11944 -11.93472 -11.73066 -11.63416 -11.53329 -11.42182 -11.16275 -10.80114 -10.30134 -9.96658 -9.40269 -9.21276 -8.68860 -6.45602 0.63217 0.91952 1.40135 1.47208 1.55624 1.61138 2.18862 2.65136 3.05845 3.36055 3.51186 3.86009 3.91414 4.03986 4.21230 4.36660 4.48841 4.51703 4.64587 4.69659 4.71081 4.74163 4.80832 4.85684 5.00744 5.07333 5.11092 5.14369 5.22038 5.23253 5.30834 5.34938 5.51013 5.76615 5.87214 6.04179 6.28567 6.55792 6.73536 6.83384 7.00955 7.55282 8.25926 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.023401 B = 0.004880 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.257737 B = 5736.809213 C = 5894.928927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.099 4.099 5 C 0.064 3.936 6 H 0.039 0.961 7 C 0.094 3.906 8 O -0.584 6.584 9 N -0.441 5.441 10 C 0.177 3.823 11 N -0.482 5.482 12 C -0.023 4.023 13 C 0.053 3.947 14 C -0.478 4.478 15 H 0.090 0.910 16 C 0.036 3.964 17 N -0.819 5.819 18 Si 0.988 3.012 19 H -0.254 1.254 20 H -0.266 1.266 21 H -0.265 1.265 22 C -0.143 4.143 23 C -0.010 4.010 24 Cl -0.079 7.079 25 C 0.043 3.957 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.382 0.618 34 H 0.138 0.862 35 H 0.292 0.708 36 H 0.116 0.884 37 H 0.025 0.975 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.510 3.674 7.011 11.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.112 4.112 3 H 0.095 0.905 4 C -0.137 4.137 5 C -0.044 4.044 6 H 0.057 0.943 7 C 0.016 3.984 8 O -0.390 6.390 9 N -0.164 5.164 10 C -0.054 4.054 11 N -0.193 5.193 12 C -0.185 4.185 13 C 0.049 3.951 14 C -0.508 4.508 15 H 0.108 0.892 16 C -0.181 4.181 17 N -0.444 5.444 18 Si 0.808 3.192 19 H -0.177 1.177 20 H -0.191 1.191 21 H -0.190 1.190 22 C -0.170 4.170 23 C -0.040 4.040 24 Cl -0.051 7.051 25 C -0.084 4.084 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.229 0.771 34 H 0.155 0.845 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.044 0.956 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.042 4.132 7.122 12.230 hybrid contribution 1.413 -1.105 -0.769 1.951 sum -7.630 3.027 6.354 10.380 Atomic orbital electron populations 1.21759 0.92468 1.02210 1.02465 1.21931 0.97604 0.98584 0.93074 0.90482 1.22527 0.95437 0.98558 0.97219 1.22896 0.97467 0.95231 0.88784 0.94264 1.22148 0.88161 0.92922 0.95134 1.86709 1.49840 1.43932 1.58561 1.62406 1.16796 1.36073 1.01079 1.18767 0.93952 0.90593 1.02045 1.67118 1.02392 1.33114 1.16687 1.22551 0.97376 0.98851 0.99732 1.18687 0.92914 0.91799 0.91745 1.19769 1.11086 0.94573 1.25331 0.89244 1.26824 0.98439 0.95079 0.97719 1.69886 1.38434 1.03200 1.32894 0.85067 0.77282 0.79408 0.77467 1.17738 1.19055 1.18970 1.21158 0.92446 1.01508 1.01890 1.21115 0.91466 0.90729 1.00706 1.98230 1.52013 1.58354 1.96503 1.23000 0.96853 0.90674 0.97906 0.92545 0.90779 0.92410 0.89088 0.89216 0.91589 0.92928 0.77061 0.84477 0.89767 0.86614 0.95629 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.89 71.98 0.64 -1.85 16 2 C -0.09 -2.29 3.59 -9.92 -0.04 -2.33 16 3 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 4 C -0.10 -2.37 6.04 31.80 0.19 -2.18 16 5 C 0.06 2.16 2.65 45.26 0.12 2.28 16 6 H 0.04 1.58 7.32 -2.39 -0.02 1.56 16 7 C 0.09 2.90 6.75 71.98 0.49 3.39 16 8 O -0.58 -22.30 12.47 -148.98 -1.86 -24.16 16 9 N -0.44 -16.98 4.33 -665.57 -2.88 -19.86 16 10 C 0.18 8.23 4.18 133.32 0.56 8.79 16 11 N -0.48 -23.85 8.75 -191.08 -1.67 -25.52 16 12 C -0.02 -1.17 10.97 85.37 0.94 -0.23 16 13 C 0.05 2.86 5.53 -21.18 -0.12 2.75 16 14 C -0.48 -24.84 9.05 23.39 0.21 -24.63 16 15 H 0.09 4.40 7.88 -2.91 -0.02 4.37 16 16 C 0.04 1.73 5.20 85.23 0.44 2.17 16 17 N -0.82 -41.92 11.13 21.82 0.24 -41.68 16 18 Si 0.99 36.78 29.58 68.60 2.03 38.81 16 19 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 20 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 21 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 22 C -0.14 -7.61 8.48 22.65 0.19 -7.42 16 23 C -0.01 -0.49 6.32 22.28 0.14 -0.35 16 24 Cl -0.08 -3.34 28.43 -2.72 -0.08 -3.41 16 25 C 0.04 1.46 6.26 86.44 0.54 2.00 16 26 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.09 1.88 7.77 -2.39 -0.02 1.86 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.38 11.21 9.12 -74.06 -0.68 10.54 16 34 H 0.14 6.55 8.06 -2.91 -0.02 6.53 16 35 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 36 H 0.12 6.40 6.52 -2.91 -0.02 6.38 16 37 H 0.03 0.99 7.29 -2.39 -0.02 0.97 16 38 H 0.07 2.42 7.68 -2.38 -0.02 2.40 16 Total: -1.00 -62.87 326.84 0.49 -62.38 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.40 Total: 31.06 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 4.31 Total: -17.61 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -4.31 Total: -87.06 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -1.86 Total: -24.16 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Atomic # 17 Polarization: -3.34 SS G_CDS: -0.08 Total: -3.41 kcal Total: -62.87 0.49 -62.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164154521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.064 kcal (2) G-P(sol) polarization free energy of solvation -62.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds