Wall clock time and date at job start Tue Mar 31 2020 07:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47172 * 2 1 4 4 C 1.53006 * 109.47032 * 119.99627 * 2 1 3 5 5 N 1.46499 * 109.47352 * 300.00019 * 4 2 1 6 6 C 1.38742 * 119.99967 * 179.97438 * 5 4 2 7 7 C 1.38677 * 120.28595 * 0.03172 * 6 5 4 8 8 C 1.38317 * 120.01326 * 179.97438 * 7 6 5 9 9 Cl 1.73601 * 119.70231 * 179.97438 * 8 7 6 10 10 C 1.39049 * 120.59922 * 359.97438 * 8 7 6 11 11 C 1.36416 * 120.57358 * 359.71623 * 10 8 7 12 12 C 1.40742 * 119.96136 * 0.56698 * 11 10 8 13 13 C 1.41024 * 120.28728 * 179.71417 * 12 11 10 14 14 H 1.08006 * 119.99512 * 154.26548 * 13 12 11 15 15 C 1.39901 * 120.00405 * 334.26525 * 13 12 11 16 16 N 1.30906 * 119.99790 * 334.64107 * 15 13 12 17 17 Si 1.86792 * 120.00504 * 154.64081 * 15 13 12 18 18 H 1.48495 * 109.47597 * 180.02562 * 17 15 13 19 19 H 1.48508 * 109.47141 * 300.00209 * 17 15 13 20 20 H 1.48499 * 109.47161 * 59.99777 * 17 15 13 21 21 C 1.50701 * 109.47133 * 239.99819 * 2 1 3 22 22 N 1.34774 * 119.99948 * 59.99981 * 21 2 1 23 23 O 1.21280 * 119.99864 * 239.99900 * 21 2 1 24 24 H 1.09007 * 109.46968 * 299.99934 * 1 2 3 25 25 H 1.08996 * 109.47067 * 60.00281 * 1 2 3 26 26 H 1.09003 * 109.47296 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47390 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.46791 * 299.99809 * 3 2 1 29 29 H 1.09002 * 109.47281 * 59.99689 * 3 2 1 30 30 H 1.08997 * 109.46943 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.46578 * 59.99872 * 4 2 1 32 32 H 0.97005 * 119.99872 * 0.02562 * 5 4 2 33 33 H 1.07995 * 119.99316 * 359.94342 * 7 6 5 34 34 H 1.07998 * 119.71910 * 179.97438 * 10 8 7 35 35 H 1.08001 * 120.01517 * 180.28123 * 11 10 8 36 36 H 0.96998 * 119.99625 * 354.18138 * 16 15 13 37 37 H 0.97000 * 119.99659 * 359.97438 * 22 21 2 38 38 H 0.96997 * 120.00178 * 179.97438 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5517 -0.0306 2.4455 6 6 1.8864 -0.5048 3.7056 7 6 2.6834 -1.6318 3.8398 8 6 3.0141 -2.0994 5.0988 9 17 4.0118 -3.5112 5.2573 10 6 2.5547 -1.4489 6.2386 11 6 1.7745 -0.3348 6.1348 12 6 1.4185 0.1583 4.8656 13 6 0.6073 1.3061 4.7503 14 1 0.6647 1.9211 3.8643 15 6 -0.2718 1.6480 5.7834 16 7 -0.7225 0.7228 6.5924 17 14 -0.8025 3.4248 6.0086 18 1 -1.7289 3.5220 7.1651 19 1 0.3923 4.2703 6.2596 20 1 -1.4923 3.8948 4.7804 21 6 2.0323 -0.7104 -1.2304 22 7 1.7067 -0.2500 -2.4545 23 8 2.7296 -1.6965 -1.1191 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7216 1.2491 31 1 1.6766 -1.7489 1.2493 32 1 0.9937 0.7579 2.3564 33 1 3.0455 -2.1446 2.9610 34 1 2.8213 -1.8266 7.2147 35 1 1.4264 0.1660 7.0262 36 1 -0.5154 -0.2100 6.4257 37 1 1.1488 0.5384 -2.5435 38 1 2.0304 -0.7071 -3.2465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167605437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:22 Heat of formation + Delta-G solvation = -46.862344 kcal Electronic energy + Delta-G solvation = -21743.041579 eV Core-core repulsion = 18416.847622 eV Total energy + Delta-G solvation = -3326.193957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19733 -38.29301 -36.31232 -35.39102 -34.14330 -33.63229 -32.58951 -29.32343 -28.25118 -27.44793 -25.73142 -24.92818 -23.12905 -21.07223 -20.37028 -19.09594 -18.10499 -17.49949 -16.66223 -16.10413 -15.19325 -15.17672 -14.55313 -14.23800 -14.02954 -13.90304 -13.74351 -13.12933 -12.89436 -12.67764 -12.34941 -12.27183 -12.20663 -12.07705 -11.84427 -11.28126 -11.19303 -10.96232 -10.78151 -10.50181 -10.42306 -10.20875 -9.85668 -9.84057 -9.73171 -9.56869 -9.00035 -8.92628 -7.55289 -7.27648 -6.53210 -4.30868 2.54996 2.60934 2.91285 3.10879 3.19807 3.30988 3.31590 3.44814 3.98375 4.40812 4.52309 4.55654 4.78208 4.78697 5.08118 5.41290 5.44105 5.64140 5.66290 5.74334 6.03215 6.09201 6.10602 6.20735 6.22832 6.29304 6.61162 6.71882 6.86718 7.09217 7.14884 7.25919 7.39126 7.68638 7.77152 7.96599 8.05998 8.13449 8.29205 8.69428 8.74699 8.90074 10.04686 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.010140 B = 0.006215 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.630038 B = 4503.789539 C = 6976.379664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 C -0.139 4.139 4 C 0.159 3.841 5 N -0.743 5.743 6 C 0.123 3.877 7 C -0.156 4.156 8 C -0.116 4.116 9 Cl -0.132 7.132 10 C -0.107 4.107 11 C -0.196 4.196 12 C 0.064 3.936 13 C -0.520 4.520 14 H 0.071 0.929 15 C 0.040 3.960 16 N -0.797 5.797 17 Si 1.062 2.938 18 H -0.275 1.275 19 H -0.275 1.275 20 H -0.278 1.278 21 C 0.532 3.468 22 N -0.855 5.855 23 O -0.538 6.538 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.396 0.604 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.300 0.700 37 H 0.400 0.600 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 3.460 -12.874 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 C -0.197 4.197 4 C 0.033 3.967 5 N -0.379 5.379 6 C 0.023 3.977 7 C -0.181 4.181 8 C -0.143 4.143 9 Cl -0.104 7.104 10 C -0.127 4.127 11 C -0.217 4.217 12 C 0.059 3.941 13 C -0.549 4.549 14 H 0.089 0.911 15 C -0.182 4.182 16 N -0.421 5.421 17 Si 0.886 3.114 18 H -0.199 1.199 19 H -0.201 1.201 20 H -0.204 1.204 21 C 0.316 3.684 22 N -0.419 5.419 23 O -0.413 6.413 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.233 0.767 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.229 0.771 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.369 3.562 -11.691 12.227 hybrid contribution 0.690 -0.776 -1.469 1.798 sum 0.321 2.786 -13.160 13.455 Atomic orbital electron populations 1.21862 0.91916 1.03075 1.02902 1.20958 0.97858 0.97172 0.93662 1.21857 1.01872 0.93123 1.02852 1.20796 0.98251 0.95109 0.82579 1.43898 1.59241 1.33468 1.01271 1.17568 1.00620 0.94462 0.85026 1.19893 1.04324 0.98797 0.95050 1.19841 1.06590 0.93448 0.94451 1.98222 1.70570 1.43292 1.98340 1.20080 1.00243 0.97015 0.95383 1.20531 1.04807 0.99339 0.97011 1.17368 0.93888 0.93152 0.89702 1.20135 1.20490 1.08527 1.05715 0.91102 1.26869 0.93207 1.06396 0.91702 1.70471 1.32722 1.04604 1.34287 0.83677 0.77282 0.73083 0.77382 1.19926 1.20093 1.20351 1.20457 0.79109 0.83822 0.85010 1.43840 1.56199 1.33923 1.07958 1.90763 1.37502 1.26194 1.86853 0.90429 0.92366 0.91865 0.91869 0.92341 0.90549 0.92648 0.92667 0.76694 0.87952 0.88582 0.86949 0.88606 0.77102 0.76996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.20 37.16 0.30 -1.24 16 2 C -0.09 -1.15 0.63 -155.66 -0.10 -1.25 16 3 C -0.14 -1.49 8.20 37.16 0.30 -1.19 16 4 C 0.16 2.65 3.08 -4.04 -0.01 2.64 16 5 N -0.74 -14.01 5.03 -58.21 -0.29 -14.30 16 6 C 0.12 2.80 6.68 -83.30 -0.56 2.25 16 7 C -0.16 -3.55 9.07 -39.39 -0.36 -3.90 16 8 C -0.12 -2.64 6.33 -39.25 -0.25 -2.89 16 9 Cl -0.13 -2.67 28.94 -51.86 -1.50 -4.17 16 10 C -0.11 -2.49 9.74 -39.94 -0.39 -2.88 16 11 C -0.20 -4.84 7.89 -39.29 -0.31 -5.15 16 12 C 0.06 1.57 5.31 -106.63 -0.57 1.01 16 13 C -0.52 -12.52 8.43 -37.90 -0.32 -12.84 16 14 H 0.07 1.61 6.75 -52.48 -0.35 1.25 16 15 C 0.04 0.95 4.93 -17.32 -0.09 0.87 16 16 N -0.80 -20.24 12.32 55.55 0.68 -19.56 16 17 Si 1.06 20.31 30.00 -169.99 -5.10 15.21 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.28 -4.97 7.11 56.52 0.40 -4.56 16 21 C 0.53 6.73 6.75 -10.99 -0.07 6.65 16 22 N -0.86 -6.74 8.66 31.22 0.27 -6.46 16 23 O -0.54 -9.22 16.82 5.56 0.09 -9.13 16 24 H 0.08 0.95 6.86 -51.93 -0.36 0.59 16 25 H 0.06 0.46 7.56 -51.93 -0.39 0.07 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.45 7.57 -51.93 -0.39 0.05 16 29 H 0.08 0.89 6.86 -51.93 -0.36 0.53 16 30 H 0.06 1.00 7.90 -51.93 -0.41 0.59 16 31 H 0.06 1.01 7.90 -51.93 -0.41 0.60 16 32 H 0.40 7.14 4.39 -40.82 -0.18 6.96 16 33 H 0.10 2.23 6.72 -52.49 -0.35 1.88 16 34 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 35 H 0.11 2.86 6.50 -52.49 -0.34 2.52 16 36 H 0.30 7.89 6.69 -40.82 -0.27 7.62 16 37 H 0.40 2.03 7.66 -40.82 -0.31 1.72 16 38 H 0.40 2.67 8.93 -40.82 -0.36 2.31 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -28.78 324.99 -7.92 -36.70 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -4.56 Total: 14.74 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -2.41 Total: -17.93 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.66 Total: -40.32 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.10 Total: 15.21 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -1.50 Total: -4.17 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.78 -7.92 -36.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167605437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.166 kcal (2) G-P(sol) polarization free energy of solvation -28.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds