Wall clock time and date at job start Tue Mar 31 2020 07:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 N 1.46507 * 109.46954 * 179.97438 * 3 2 1 5 5 C 1.46495 * 120.00183 * 270.00374 * 4 3 2 6 6 C 1.50701 * 109.47064 * 269.99895 * 5 4 3 7 7 H 1.07995 * 120.00077 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99832 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99955 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99853 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47110 * 90.00251 * 10 8 6 12 12 H 1.48505 * 109.46941 * 210.00344 * 10 8 6 13 13 H 1.48498 * 109.47010 * 330.00227 * 10 8 6 14 14 C 1.34779 * 119.99450 * 90.00420 * 4 3 2 15 15 O 1.21584 * 120.00001 * 180.02562 * 14 4 3 16 16 N 1.34773 * 120.00165 * 0.27170 * 14 4 3 17 17 C 1.40003 * 120.00048 * 175.20172 * 16 14 4 18 18 C 1.38842 * 120.07470 * 34.65091 * 17 16 14 19 19 C 1.38117 * 119.94753 * 179.97438 * 18 17 16 20 20 C 1.38293 * 120.09011 * 359.97438 * 19 18 17 21 21 C 1.38264 * 120.14506 * 0.02571 * 20 19 18 22 22 C 1.38224 * 120.05861 * 359.69768 * 21 20 19 23 23 Cl 1.73602 * 120.04669 * 180.29599 * 22 21 20 24 24 H 1.08990 * 109.46944 * 59.99869 * 1 2 3 25 25 H 1.08997 * 109.46983 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46649 * 299.99562 * 1 2 3 27 27 H 1.09002 * 109.46649 * 240.00438 * 2 1 3 28 28 H 1.08998 * 109.47350 * 120.00622 * 2 1 3 29 29 H 1.09002 * 109.47046 * 60.00681 * 3 2 1 30 30 H 1.08993 * 109.47120 * 300.00335 * 3 2 1 31 31 H 1.08997 * 109.47163 * 30.00207 * 5 4 3 32 32 H 1.09002 * 109.46725 * 150.00040 * 5 4 3 33 33 H 0.97006 * 119.99796 * 179.97438 * 9 8 6 34 34 H 0.97008 * 120.00232 * 355.21062 * 16 14 4 35 35 H 1.08002 * 120.02353 * 359.95161 * 18 17 16 36 36 H 1.08000 * 119.95799 * 179.97438 * 19 18 17 37 37 H 1.07999 * 119.92938 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.96923 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.2371 1.4426 1.2696 6 6 4.4881 2.8634 1.7046 7 1 4.1371 3.6842 1.0968 8 6 5.1650 3.1154 2.8791 9 7 5.5920 2.1159 3.6194 10 14 5.4768 4.8766 3.4179 11 1 4.3464 5.3442 4.2596 12 1 6.7365 4.9388 4.2018 13 1 5.5954 5.7469 2.2205 14 6 4.1794 1.4424 -1.1664 15 8 5.3952 1.4419 -1.1660 16 7 3.5059 1.4478 -2.3338 17 6 4.2031 1.5491 -3.5436 18 6 5.4507 0.9553 -3.6796 19 6 6.1360 1.0565 -4.8745 20 6 5.5809 1.7479 -5.9357 21 6 4.3387 2.3407 -5.8045 22 6 3.6451 2.2385 -4.6133 23 17 2.0821 2.9764 -4.4514 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.6477 0.9288 2.0290 32 1 5.1896 0.9287 1.1396 33 1 6.0685 2.2932 4.4455 34 1 2.5381 1.3817 -2.3358 35 1 5.8852 0.4150 -2.8515 36 1 7.1067 0.5949 -4.9803 37 1 6.1191 1.8257 -6.8688 38 1 3.9080 2.8804 -6.6350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202060621.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:36 Heat of formation + Delta-G solvation = -11.362208 kcal Electronic energy + Delta-G solvation = -21699.026578 eV Core-core repulsion = 18374.372022 eV Total energy + Delta-G solvation = -3324.654555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.37812 -38.61606 -36.44789 -35.84063 -34.51278 -33.09482 -32.04400 -30.66046 -29.46104 -27.33151 -25.62639 -23.50311 -22.75919 -21.93733 -21.46858 -19.39155 -18.12487 -17.08276 -16.45671 -16.42126 -15.34133 -15.13019 -14.60824 -14.49424 -14.33635 -13.96971 -13.74014 -13.49698 -13.31120 -12.88594 -12.34933 -12.09675 -11.83269 -11.79349 -11.58893 -11.44026 -11.27450 -11.14675 -10.92725 -10.88763 -10.60392 -10.51324 -10.20055 -10.11458 -9.62738 -9.31692 -8.73441 -8.43610 -8.07184 -7.63906 -6.04700 -4.09016 1.19375 1.37604 2.12291 3.09556 3.30502 3.37301 3.42919 3.58357 3.93964 4.30794 4.47711 4.82436 5.01789 5.10204 5.20556 5.25354 5.29743 5.40095 5.45641 5.50064 5.60037 5.85121 5.88762 5.96533 6.10402 6.21249 6.24584 6.28426 6.45989 6.49118 6.64670 6.75547 7.07481 7.31795 7.46953 7.62315 7.92961 8.22294 8.51560 8.91292 9.17429 9.56291 11.03212 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.004975 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.477040 B = 5627.167192 C = 6493.943875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.109 3.891 4 N -0.604 5.604 5 C 0.261 3.739 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.700 3.300 15 O -0.567 6.567 16 N -0.693 5.693 17 C 0.194 3.806 18 C -0.112 4.112 19 C -0.095 4.095 20 C -0.138 4.138 21 C -0.093 4.093 22 C -0.076 4.076 23 Cl -0.074 7.074 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.404 0.596 35 H 0.153 0.847 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.939 -3.552 -16.447 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.015 4.015 4 N -0.337 5.337 5 C 0.142 3.858 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.402 3.598 15 O -0.443 6.443 16 N -0.343 5.343 17 C 0.095 3.905 18 C -0.133 4.133 19 C -0.114 4.114 20 C -0.157 4.157 21 C -0.113 4.113 22 C -0.105 4.105 23 Cl -0.046 7.046 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.242 0.758 35 H 0.171 0.829 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.107 -3.516 -16.071 17.921 hybrid contribution -0.522 1.130 0.437 1.319 sum -7.630 -2.386 -15.635 17.560 Atomic orbital electron populations 1.21703 0.95471 1.01575 1.01859 1.22026 0.95735 0.97908 1.02742 1.21498 0.81384 0.95927 1.02712 1.47605 1.05399 1.74553 1.06163 1.19251 0.92278 0.97502 0.76784 1.21450 1.36520 0.92364 1.06195 0.92486 1.24907 0.95322 0.97386 0.96363 1.69928 1.38459 1.30684 1.14319 0.86508 0.77674 0.84742 0.78580 1.20653 1.21072 1.19924 1.15895 0.85506 0.78402 0.79996 1.90879 1.11259 1.56735 1.85427 1.43034 1.10257 1.77454 1.03537 1.17339 0.93377 0.95253 0.84481 1.21470 0.93772 0.99477 0.98601 1.21175 0.99724 0.98134 0.92381 1.21008 0.95348 0.99900 0.99446 1.20784 0.94858 1.00056 0.95570 1.20743 0.90026 1.02974 0.96785 1.98345 1.26627 1.81590 1.98003 0.92923 0.92749 0.92340 0.92429 0.90957 0.89360 0.92368 0.94709 0.93668 0.92721 0.75834 0.82932 0.85297 0.85426 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.15 -1.96 6.26 -26.73 -0.17 -2.12 16 3 C 0.11 1.76 5.14 -4.04 -0.02 1.74 16 4 N -0.60 -12.71 2.46 -180.81 -0.44 -13.15 16 5 C 0.26 6.72 5.16 -5.20 -0.03 6.69 16 6 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 10 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 14 C 0.70 14.88 8.13 -86.92 -0.71 14.17 16 15 O -0.57 -14.15 13.33 5.29 0.07 -14.08 16 16 N -0.69 -11.72 4.90 -14.20 -0.07 -11.78 16 17 C 0.19 3.11 6.31 -83.64 -0.53 2.58 16 18 C -0.11 -1.78 8.70 -39.40 -0.34 -2.12 16 19 C -0.10 -1.19 10.04 -39.61 -0.40 -1.59 16 20 C -0.14 -1.50 10.04 -39.55 -0.40 -1.90 16 21 C -0.09 -1.08 9.82 -39.58 -0.39 -1.47 16 22 C -0.08 -1.04 6.34 -39.32 -0.25 -1.29 16 23 Cl -0.07 -0.94 27.95 -51.86 -1.45 -2.39 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.48 8.07 -51.93 -0.42 1.06 16 30 H 0.06 0.82 6.43 -51.93 -0.33 0.49 16 31 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.40 5.87 5.85 -40.82 -0.24 5.63 16 35 H 0.15 2.74 6.19 -52.49 -0.32 2.41 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -31.98 336.50 -9.43 -41.41 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.05 Total: 3.67 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -3.28 Total: -0.05 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.22 Total: -50.60 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.07 Total: -14.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.45 Total: -2.39 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.98 -9.43 -41.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202060621.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.044 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds