Wall clock time and date at job start Tue Mar 31 2020 07:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 N 1.46507 * 109.46954 * 179.97438 * 3 2 1 5 5 C 1.46495 * 120.00183 * 270.00374 * 4 3 2 6 6 C 1.50701 * 109.47064 * 269.99895 * 5 4 3 7 7 H 1.07995 * 120.00077 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99832 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99955 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99853 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47110 * 90.00251 * 10 8 6 12 12 H 1.48505 * 109.46941 * 210.00344 * 10 8 6 13 13 H 1.48498 * 109.47010 * 330.00227 * 10 8 6 14 14 C 1.34779 * 119.99450 * 90.00420 * 4 3 2 15 15 O 1.21584 * 120.00001 * 180.02562 * 14 4 3 16 16 N 1.34773 * 120.00165 * 0.27170 * 14 4 3 17 17 C 1.40003 * 120.00048 * 175.20172 * 16 14 4 18 18 C 1.38842 * 120.07470 * 34.65091 * 17 16 14 19 19 C 1.38117 * 119.94753 * 179.97438 * 18 17 16 20 20 C 1.38293 * 120.09011 * 359.97438 * 19 18 17 21 21 C 1.38264 * 120.14506 * 0.02571 * 20 19 18 22 22 C 1.38224 * 120.05861 * 359.69768 * 21 20 19 23 23 Cl 1.73602 * 120.04669 * 180.29599 * 22 21 20 24 24 H 1.08990 * 109.46944 * 59.99869 * 1 2 3 25 25 H 1.08997 * 109.46983 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46649 * 299.99562 * 1 2 3 27 27 H 1.09002 * 109.46649 * 240.00438 * 2 1 3 28 28 H 1.08998 * 109.47350 * 120.00622 * 2 1 3 29 29 H 1.09002 * 109.47046 * 60.00681 * 3 2 1 30 30 H 1.08993 * 109.47120 * 300.00335 * 3 2 1 31 31 H 1.08997 * 109.47163 * 30.00207 * 5 4 3 32 32 H 1.09002 * 109.46725 * 150.00040 * 5 4 3 33 33 H 0.97006 * 119.99796 * 179.97438 * 9 8 6 34 34 H 0.97008 * 120.00232 * 355.21062 * 16 14 4 35 35 H 1.08002 * 120.02353 * 359.95161 * 18 17 16 36 36 H 1.08000 * 119.95799 * 179.97438 * 19 18 17 37 37 H 1.07999 * 119.92938 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.96923 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.2371 1.4426 1.2696 6 6 4.4881 2.8634 1.7046 7 1 4.1371 3.6842 1.0968 8 6 5.1650 3.1154 2.8791 9 7 5.5920 2.1159 3.6194 10 14 5.4768 4.8766 3.4179 11 1 4.3464 5.3442 4.2596 12 1 6.7365 4.9388 4.2018 13 1 5.5954 5.7469 2.2205 14 6 4.1794 1.4424 -1.1664 15 8 5.3952 1.4419 -1.1660 16 7 3.5059 1.4478 -2.3338 17 6 4.2031 1.5491 -3.5436 18 6 5.4507 0.9553 -3.6796 19 6 6.1360 1.0565 -4.8745 20 6 5.5809 1.7479 -5.9357 21 6 4.3387 2.3407 -5.8045 22 6 3.6451 2.2385 -4.6133 23 17 2.0821 2.9764 -4.4514 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.6477 0.9288 2.0290 32 1 5.1896 0.9287 1.1396 33 1 6.0685 2.2932 4.4455 34 1 2.5381 1.3817 -2.3358 35 1 5.8852 0.4150 -2.8515 36 1 7.1067 0.5949 -4.9803 37 1 6.1191 1.8257 -6.8688 38 1 3.9080 2.8804 -6.6350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202060621.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:35 Heat of formation + Delta-G solvation = -29.467595 kcal Electronic energy + Delta-G solvation = -21699.811686 eV Core-core repulsion = 18374.372022 eV Total energy + Delta-G solvation = -3325.439664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81378 -39.86648 -37.52884 -37.30431 -35.98550 -34.94655 -33.61039 -31.69030 -30.79251 -29.11452 -26.99390 -25.28446 -23.93883 -23.22033 -22.64898 -20.89728 -19.51732 -18.62430 -18.44031 -17.58712 -16.81679 -16.62788 -16.16661 -15.92501 -15.61508 -15.20677 -15.07796 -14.71291 -14.50002 -14.26183 -14.17141 -13.48113 -13.20750 -13.03400 -12.87531 -12.81649 -12.60814 -12.50951 -12.42251 -12.28289 -12.14292 -11.96159 -11.74661 -11.64712 -11.47238 -10.96070 -10.63970 -9.78588 -9.61444 -9.06346 -8.22522 -6.36875 0.14737 0.32299 1.07764 1.35469 1.38371 1.48100 1.63686 2.11466 2.37908 2.74876 2.90133 3.07412 3.81975 3.90336 4.06920 4.09616 4.28609 4.35612 4.38664 4.46024 4.53143 4.67712 4.86491 4.91099 4.94871 5.14085 5.15971 5.18222 5.24000 5.25945 5.41528 5.45393 5.52428 5.57280 5.74839 5.93922 5.98978 6.05464 6.71041 6.94618 7.29427 7.55094 8.84120 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.004975 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.477040 B = 5627.167192 C = 6493.943875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.106 3.894 4 N -0.610 5.610 5 C 0.280 3.720 6 C -0.543 4.543 7 H 0.048 0.952 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.965 3.035 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.277 1.277 14 C 0.697 3.303 15 O -0.614 6.614 16 N -0.677 5.677 17 C 0.158 3.842 18 C -0.138 4.138 19 C -0.096 4.096 20 C -0.120 4.120 21 C -0.089 4.089 22 C -0.079 4.079 23 Cl -0.065 7.065 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.029 0.971 32 H 0.002 0.998 33 H 0.268 0.732 34 H 0.414 0.586 35 H 0.119 0.881 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.158 -2.262 -18.841 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C -0.017 4.017 4 N -0.343 5.343 5 C 0.159 3.841 6 C -0.582 4.582 7 H 0.067 0.933 8 C -0.187 4.187 9 N -0.565 5.565 10 Si 0.789 3.211 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.202 1.202 14 C 0.399 3.601 15 O -0.493 6.493 16 N -0.328 5.328 17 C 0.062 3.938 18 C -0.159 4.159 19 C -0.114 4.114 20 C -0.139 4.139 21 C -0.107 4.107 22 C -0.109 4.109 23 Cl -0.036 7.036 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.020 0.980 33 H 0.077 0.923 34 H 0.254 0.746 35 H 0.137 0.863 36 H 0.168 0.832 37 H 0.187 0.813 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.393 -2.235 -18.512 20.448 hybrid contribution -0.121 0.695 1.048 1.263 sum -8.513 -1.540 -17.464 19.489 Atomic orbital electron populations 1.21668 0.92580 1.02860 1.02801 1.21937 0.98070 0.95647 1.01952 1.21774 0.78344 0.98067 1.03514 1.47463 1.07285 1.74764 1.04829 1.18675 0.90811 0.95931 0.78719 1.21682 1.36983 0.93036 1.06486 0.93324 1.25778 0.94844 1.01760 0.96342 1.70038 1.38879 1.32850 1.14747 0.85459 0.78190 0.79320 0.78091 1.18738 1.20442 1.20219 1.16034 0.85068 0.78054 0.80959 1.90841 1.13444 1.58736 1.86318 1.42663 1.10518 1.76907 1.02677 1.17576 0.94104 0.97509 0.84629 1.21368 0.94574 1.00699 0.99268 1.21464 1.00370 0.98060 0.91538 1.21482 0.94877 0.97402 1.00119 1.21250 0.94793 0.99325 0.95377 1.20885 0.90606 1.02603 0.96763 1.98345 1.25942 1.81313 1.98039 0.91186 0.91320 0.92197 0.92176 0.92875 0.90042 0.89952 0.95333 0.97987 0.92346 0.74597 0.86294 0.83157 0.81283 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.91 71.98 0.71 -2.02 16 2 C -0.14 -3.69 6.26 30.60 0.19 -3.50 16 3 C 0.11 3.44 5.14 86.38 0.44 3.89 16 4 N -0.61 -26.93 2.46 -844.21 -2.07 -29.00 16 5 C 0.28 15.28 5.16 85.63 0.44 15.72 16 6 C -0.54 -31.82 9.39 25.60 0.24 -31.58 16 7 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 8 C 0.01 0.70 5.46 84.66 0.46 1.16 16 9 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 10 Si 0.96 45.57 29.54 68.60 2.03 47.59 16 11 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 14 C 0.70 31.14 8.13 179.06 1.45 32.59 16 15 O -0.61 -32.80 13.33 -3.98 -0.05 -32.85 16 16 N -0.68 -23.39 4.90 -317.09 -1.55 -24.94 16 17 C 0.16 5.10 6.31 38.15 0.24 5.34 16 18 C -0.14 -4.51 8.70 22.39 0.19 -4.31 16 19 C -0.10 -2.26 10.04 22.25 0.22 -2.03 16 20 C -0.12 -2.17 10.04 22.29 0.22 -1.95 16 21 C -0.09 -1.75 9.82 22.27 0.22 -1.53 16 22 C -0.08 -2.04 6.34 22.44 0.14 -1.90 16 23 Cl -0.07 -1.51 27.95 -2.72 -0.08 -1.58 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 30 H 0.08 2.26 6.43 -2.39 -0.02 2.25 16 31 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 32 H 0.00 0.13 7.42 -2.39 -0.02 0.11 16 33 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 34 H 0.41 11.93 5.85 -92.70 -0.54 11.39 16 35 H 0.12 4.66 6.19 -2.91 -0.02 4.64 16 36 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 37 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -73.24 336.50 4.28 -68.97 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.53 Total: 17.67 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 5.19 Total: 9.90 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -3.34 Total: -109.70 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.05 Total: -32.85 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.58 kcal Total: -73.24 4.28 -68.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202060621.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.500 kcal (2) G-P(sol) polarization free energy of solvation -73.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds