Wall clock time and date at job start Tue Mar 31 2020 08:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39841 * 125.42441 * 2 1 4 4 C 1.30219 * 110.11863 * 180.02562 * 3 2 1 5 5 C 1.46033 * 107.74046 * 0.02562 * 4 3 2 6 6 C 1.39675 * 133.87395 * 180.02562 * 5 4 3 7 7 C 1.38995 * 119.39564 * 179.97438 * 6 5 4 8 8 C 1.47826 * 119.92355 * 179.97438 * 7 6 5 9 9 C 1.39173 * 120.25152 * 309.72627 * 8 7 6 10 10 C 1.37990 * 120.12768 * 179.72001 * 9 8 7 11 11 C 1.39201 * 120.65585 * 0.56001 * 10 9 8 12 12 F 1.35101 * 119.74343 * 179.74133 * 11 10 9 13 13 C 1.37614 * 120.50436 * 359.71944 * 11 10 9 14 14 C 1.40722 * 119.85214 * 359.97438 * 13 11 10 15 15 C 1.40861 * 120.32149 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00102 * 153.48949 * 15 14 13 17 17 C 1.40038 * 120.00182 * 333.48672 * 15 14 13 18 18 N 1.30798 * 119.99322 * 343.63722 * 17 15 14 19 19 Si 1.86793 * 120.00236 * 163.63596 * 17 15 14 20 20 H 1.48500 * 109.47278 * 94.64139 * 19 17 15 21 21 H 1.48499 * 109.47300 * 214.63903 * 19 17 15 22 22 H 1.48493 * 109.47271 * 334.64201 * 19 17 15 23 23 C 1.40322 * 120.14749 * 0.02562 * 7 6 5 24 24 C 1.36203 * 120.67732 * 0.02562 * 23 7 6 25 25 C 1.36975 * 125.43192 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47553 * 90.02626 * 1 2 3 27 27 H 1.09005 * 109.46884 * 210.02664 * 1 2 3 28 28 H 1.09005 * 109.47335 * 330.01916 * 1 2 3 29 29 H 1.07998 * 126.12930 * 179.97438 * 4 3 2 30 30 H 1.07994 * 120.30448 * 359.94937 * 6 5 4 31 31 H 1.08000 * 119.93558 * 359.97438 * 9 8 7 32 32 H 1.08001 * 119.67215 * 180.27830 * 10 9 8 33 33 H 1.08010 * 120.07489 * 180.02562 * 13 11 10 34 34 H 0.97008 * 119.99413 * 180.02562 * 18 17 15 35 35 H 1.08000 * 119.66133 * 179.97438 * 23 7 6 36 36 H 1.07995 * 119.89994 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2756 1.1395 0.0000 4 6 3.5316 0.7958 -0.0005 5 6 3.5936 -0.6632 -0.0016 6 6 4.6407 -1.5876 -0.0020 7 6 4.3507 -2.9470 -0.0025 8 6 5.4498 -3.9355 -0.0035 9 6 6.4844 -3.8326 -0.9287 10 6 7.5121 -4.7534 -0.9236 11 6 7.5231 -5.7998 -0.0057 12 9 8.5357 -6.6940 -0.0206 13 6 6.5105 -5.9302 0.9171 14 6 5.4552 -4.9994 0.9352 15 6 4.4134 -5.1237 1.8751 16 1 3.8629 -4.2494 2.1898 17 6 4.0914 -6.3808 2.4014 18 7 4.5165 -7.4664 1.8083 19 14 3.0550 -6.5074 3.9502 20 1 1.6281 -6.6828 3.5781 21 1 3.5041 -7.6735 4.7525 22 1 3.2086 -5.2666 4.7514 23 6 3.0169 -3.3830 -0.0031 24 6 1.9924 -2.4855 -0.0037 25 6 2.2591 -1.1161 -0.0005 26 1 -0.3634 -0.0005 -1.0276 27 1 -0.3633 -0.8898 0.5143 28 1 -0.3634 0.8902 0.5136 29 1 4.3760 1.4691 -0.0011 30 1 5.6663 -1.2493 -0.0024 31 1 6.4851 -3.0282 -1.6493 32 1 8.3137 -4.6640 -1.6420 33 1 6.5262 -6.7445 1.6265 34 1 4.2932 -8.3372 2.1727 35 1 2.8005 -4.4411 -0.0039 36 1 0.9706 -2.8350 -0.0046 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241437849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:33 Heat of formation + Delta-G solvation = 53.867675 kcal Electronic energy + Delta-G solvation = -22487.796055 eV Core-core repulsion = 19044.942624 eV Total energy + Delta-G solvation = -3442.853431 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.70038 -40.80852 -38.05877 -36.08311 -33.87165 -33.22440 -30.94554 -30.10217 -29.41502 -27.81345 -26.23108 -25.34744 -22.78801 -21.82074 -21.22180 -20.36164 -19.86722 -17.68824 -16.77235 -16.41583 -15.89501 -15.25394 -15.07249 -14.90190 -14.53581 -14.36179 -14.09375 -13.75190 -13.22801 -13.04432 -12.86636 -12.78157 -12.59753 -12.21569 -12.12016 -11.72353 -11.28949 -11.24353 -11.03774 -10.83381 -10.61304 -10.53909 -10.36263 -10.02431 -9.75372 -9.54495 -9.35439 -8.17659 -7.72418 -7.65759 -7.08914 -6.82642 -4.57812 1.42368 1.85704 2.59188 2.65145 2.76733 2.86317 2.97710 3.00881 3.07492 3.78213 4.30750 4.42990 4.66011 4.95386 5.07694 5.21875 5.37185 5.41342 5.44882 5.59721 5.62434 5.74693 5.93549 6.11949 6.17034 6.28902 6.41748 6.50701 6.76307 6.81513 6.85058 6.95091 7.03621 7.23001 7.30264 7.40933 7.44530 7.60266 7.71443 7.81754 7.91657 8.06520 8.38623 8.63290 8.68798 9.95105 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.005464 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.080946 B = 5123.683221 C = 6779.134059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.418 5.418 3 N -0.269 5.269 4 C 0.068 3.932 5 C -0.178 4.178 6 C -0.061 4.061 7 C -0.015 4.015 8 C -0.184 4.184 9 C -0.047 4.047 10 C -0.277 4.277 11 C 0.107 3.893 12 F -0.167 7.167 13 C -0.196 4.196 14 C 0.147 3.853 15 C -0.444 4.444 16 H 0.088 0.912 17 C 0.076 3.924 18 N -0.780 5.780 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.035 4.035 24 C -0.156 4.156 25 C 0.113 3.887 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.191 0.809 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.285 0.715 35 H 0.138 0.862 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 7.939 -1.508 9.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.208 5.208 3 N -0.082 5.082 4 C -0.129 4.129 5 C -0.186 4.186 6 C -0.081 4.081 7 C -0.017 4.017 8 C -0.186 4.186 9 C -0.065 4.065 10 C -0.297 4.297 11 C 0.088 3.912 12 F -0.146 7.146 13 C -0.216 4.216 14 C 0.144 3.856 15 C -0.473 4.473 16 H 0.106 0.894 17 C -0.144 4.144 18 N -0.404 5.404 19 Si 0.729 3.271 20 H -0.193 1.193 21 H -0.198 1.198 22 H -0.181 1.181 23 C -0.056 4.056 24 C -0.177 4.177 25 C 0.000 4.000 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.208 0.792 30 H 0.141 0.859 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.147 0.853 34 H 0.096 0.904 35 H 0.156 0.844 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.451 8.626 -1.492 10.874 hybrid contribution 0.175 -1.060 0.661 1.262 sum -6.277 7.566 -0.831 9.865 Atomic orbital electron populations 1.21610 0.74983 1.03684 1.02382 1.47940 1.05322 1.01303 1.66240 1.76411 1.02825 1.09378 1.19550 1.24978 0.94396 0.93465 1.00042 1.19763 0.93073 0.92819 1.12936 1.20730 0.97143 0.91243 0.99023 1.18509 0.92795 0.91516 0.98867 1.18543 0.97171 1.01391 1.01461 1.20404 0.92687 0.96670 0.96760 1.20198 1.03459 1.00490 1.05538 1.17776 0.86120 0.88666 0.98620 1.91338 1.59512 1.67472 1.96326 1.21219 0.94149 1.04482 1.01767 1.17257 0.90724 0.88334 0.89318 1.19594 1.14134 0.94076 1.19450 0.89358 1.26000 0.95650 0.95305 0.97448 1.69798 1.35734 0.99297 1.35564 0.86313 0.79986 0.79367 0.81391 1.19280 1.19840 1.18143 1.21076 0.91352 0.99967 0.93198 1.19661 0.99612 0.88593 1.09882 1.18813 0.90540 0.89261 1.01391 0.91864 0.90080 0.90082 0.79231 0.85944 0.88095 0.88121 0.85333 0.90360 0.84394 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.23 11.39 59.85 0.68 1.91 16 2 N -0.42 -6.42 4.05 -65.38 -0.26 -6.68 16 3 N -0.27 -4.24 12.40 31.89 0.40 -3.84 16 4 C 0.07 1.01 12.29 -15.11 -0.19 0.82 16 5 C -0.18 -3.04 6.35 -105.22 -0.67 -3.71 16 6 C -0.06 -1.08 9.57 -38.76 -0.37 -1.45 16 7 C -0.02 -0.30 4.92 -104.91 -0.52 -0.82 16 8 C -0.18 -4.06 5.51 -104.23 -0.57 -4.64 16 9 C -0.05 -0.98 9.48 -39.33 -0.37 -1.35 16 10 C -0.28 -6.00 10.01 -39.31 -0.39 -6.40 16 11 C 0.11 2.54 7.28 -39.45 -0.29 2.25 16 12 F -0.17 -3.86 17.26 2.25 0.04 -3.82 16 13 C -0.20 -4.89 8.63 -38.87 -0.34 -5.22 16 14 C 0.15 3.56 5.55 -106.57 -0.59 2.97 16 15 C -0.44 -10.56 7.09 -37.92 -0.27 -10.82 16 16 H 0.09 2.06 6.62 -52.48 -0.35 1.72 16 17 C 0.08 1.74 5.15 -17.32 -0.09 1.66 16 18 N -0.78 -18.66 11.00 55.55 0.61 -18.05 16 19 Si 0.91 17.40 29.59 -169.99 -5.03 12.37 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 23 C -0.04 -0.67 7.90 -39.53 -0.31 -0.98 16 24 C -0.16 -2.60 9.92 -39.84 -0.39 -2.99 16 25 C 0.11 1.91 6.87 -84.07 -0.58 1.34 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.19 2.02 8.06 -52.49 -0.42 1.59 16 30 H 0.12 1.97 8.04 -52.49 -0.42 1.55 16 31 H 0.10 1.83 8.04 -52.49 -0.42 1.41 16 32 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.13 3.33 6.26 -52.48 -0.33 3.01 16 34 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 35 H 0.14 2.71 7.28 -52.49 -0.38 2.32 16 36 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 316.62 15.07 4.77 4.77 Total: -1.00 -27.38 316.62 -8.31 -35.69 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -3.57 Total: 7.00 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -5.26 Total: -27.43 kcal Atomic # 7 Polarization: -29.32 SS G_CDS: 0.74 Total: -28.57 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.04 Total: -3.82 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.38 -8.31 -35.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241437849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.555 kcal (2) G-P(sol) polarization free energy of solvation -27.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds