Wall clock time and date at job start Tue Mar 31 2020 08:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39852 * 125.44434 * 2 1 4 4 C 1.30225 * 110.10693 * 179.97438 * 3 2 1 5 5 C 1.45994 * 107.76600 * 0.02562 * 4 3 2 6 6 C 1.39780 * 133.89353 * 180.02562 * 5 4 3 7 7 C 1.38573 * 119.43057 * 179.97438 * 6 5 4 8 8 C 1.48414 * 119.89067 * 180.02562 * 7 6 5 9 9 C 1.39696 * 119.98764 * 0.02562 * 8 7 6 10 10 C 1.38620 * 120.35617 * 179.97438 * 9 8 7 11 11 F 1.35091 * 119.84121 * 179.97438 * 10 9 8 12 12 C 1.37939 * 120.32302 * 0.02562 * 10 9 8 13 13 C 1.40718 * 119.96938 * 359.97438 * 12 10 9 14 14 C 1.41424 * 120.17640 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99850 * 154.76070 * 14 13 12 16 16 C 1.39918 * 120.00201 * 334.75604 * 14 13 12 17 17 N 1.30839 * 119.99952 * 342.81138 * 16 14 13 18 18 Si 1.86800 * 120.00245 * 162.80953 * 16 14 13 19 19 H 1.48497 * 109.47247 * 94.96428 * 18 16 14 20 20 H 1.48504 * 109.47225 * 214.96524 * 18 16 14 21 21 H 1.48503 * 109.46927 * 334.96246 * 18 16 14 22 22 C 1.38734 * 119.98679 * 179.72539 * 8 7 6 23 23 C 1.40023 * 120.21695 * 0.02562 * 7 6 5 24 24 C 1.36323 * 120.70146 * 0.02562 * 23 7 6 25 25 C 1.37059 * 125.44711 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47361 * 90.02412 * 1 2 3 27 27 H 1.09003 * 109.46699 * 210.02230 * 1 2 3 28 28 H 1.09001 * 109.47084 * 330.01897 * 1 2 3 29 29 H 1.08006 * 126.11800 * 179.97438 * 4 3 2 30 30 H 1.08001 * 120.28639 * 359.96678 * 6 5 4 31 31 H 1.07999 * 119.82416 * 359.95056 * 9 8 7 32 32 H 1.08000 * 120.01849 * 179.97438 * 12 10 9 33 33 H 0.96998 * 120.00242 * 179.97438 * 17 16 14 34 34 H 1.07997 * 120.16026 * 0.02594 * 22 8 7 35 35 H 1.07999 * 119.64325 * 179.97438 * 23 7 6 36 36 H 1.08010 * 119.91881 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2760 1.1393 0.0000 4 6 3.5319 0.7949 0.0005 5 6 3.5938 -0.6637 0.0003 6 6 4.6412 -1.5893 0.0011 7 6 4.3523 -2.9446 0.0011 8 6 5.4565 -3.9362 0.0026 9 6 6.7845 -3.5025 0.0044 10 6 7.8217 -4.4221 0.0063 11 9 9.1021 -3.9911 0.0075 12 6 7.5530 -5.7750 0.0058 13 6 6.2204 -6.2270 0.0039 14 6 5.9399 -7.6131 0.0029 15 1 5.0031 -7.9748 0.4004 16 6 6.8760 -8.5160 -0.5132 17 7 7.8401 -8.0878 -1.2871 18 14 6.7493 -10.3327 -0.0973 19 1 6.0049 -11.0360 -1.1726 20 1 8.1125 -10.9099 0.0201 21 1 6.0298 -10.4964 1.1915 22 6 5.1695 -5.2935 0.0083 23 6 3.0220 -3.3815 -0.0002 24 6 1.9950 -2.4851 -0.0020 25 6 2.2599 -1.1166 0.0005 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 4.3766 1.4679 0.0003 30 1 5.6669 -1.2511 0.0016 31 1 7.0041 -2.4451 0.0040 32 1 8.3650 -6.4871 0.0068 33 1 8.4893 -8.7136 -1.6446 34 1 4.1437 -5.6312 0.0114 35 1 2.8074 -4.4400 -0.0006 36 1 0.9735 -2.8361 -0.0034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241439608.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:31 Heat of formation + Delta-G solvation = 55.830002 kcal Electronic energy + Delta-G solvation = -21903.728448 eV Core-core repulsion = 18460.960110 eV Total energy + Delta-G solvation = -3442.768338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -47.68148 -41.08771 -38.15628 -36.42287 -33.82527 -33.44359 -31.11382 -30.24014 -29.48166 -27.94948 -26.27194 -25.56156 -23.04584 -22.43878 -20.86688 -20.35469 -20.24378 -17.69799 -17.13696 -16.25674 -15.86065 -15.47214 -15.03013 -14.99511 -14.74022 -14.35314 -14.22171 -14.01334 -13.50533 -13.41998 -13.10686 -12.91573 -12.68361 -12.06853 -11.94606 -11.79849 -11.64823 -11.28870 -11.12480 -10.90273 -10.79673 -10.49510 -10.49295 -10.02002 -9.86692 -9.71740 -9.29081 -8.56479 -8.08551 -7.53637 -6.96716 -6.83853 -4.55576 1.12046 1.43432 2.42248 2.58946 2.60647 2.85066 3.01323 3.04143 3.10452 3.83100 4.07571 4.45195 4.53532 4.65990 4.82997 5.05491 5.16185 5.19620 5.28400 5.35967 5.47297 5.57489 5.75533 5.79934 5.97749 6.08770 6.31485 6.45352 6.54749 6.58727 6.70115 6.82674 6.95027 6.99878 7.11606 7.17173 7.45096 7.58897 7.66724 7.70294 7.81270 8.09927 8.42922 8.70112 8.72011 10.04118 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.022827 B = 0.003572 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.321037 B = 7837.474769 C = 8973.911625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.417 5.417 3 N -0.263 5.263 4 C 0.073 3.927 5 C -0.178 4.178 6 C -0.042 4.042 7 C -0.053 4.053 8 C -0.005 4.005 9 C -0.264 4.264 10 C 0.107 3.893 11 F -0.166 7.166 12 C -0.196 4.196 13 C 0.128 3.872 14 C -0.457 4.457 15 H 0.084 0.916 16 C 0.075 3.925 17 N -0.786 5.786 18 Si 0.910 3.090 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.213 4.213 23 C -0.055 4.055 24 C -0.146 4.146 25 C 0.117 3.883 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.195 0.805 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.284 0.716 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.519 8.851 1.799 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.206 5.206 3 N -0.075 5.075 4 C -0.125 4.125 5 C -0.185 4.185 6 C -0.062 4.062 7 C -0.055 4.055 8 C -0.005 4.005 9 C -0.284 4.284 10 C 0.088 3.912 11 F -0.145 7.145 12 C -0.216 4.216 13 C 0.126 3.874 14 C -0.486 4.486 15 H 0.102 0.898 16 C -0.144 4.144 17 N -0.410 5.410 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.233 4.233 23 C -0.076 4.076 24 C -0.168 4.168 25 C 0.004 3.996 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.211 0.789 30 H 0.149 0.851 31 H 0.122 0.878 32 H 0.147 0.853 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.154 0.846 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.305 9.780 1.648 14.302 hybrid contribution 0.739 -1.386 -0.010 1.571 sum -9.566 8.394 1.638 12.831 Atomic orbital electron populations 1.21659 0.74621 1.03861 1.02653 1.48041 1.05527 1.01195 1.65867 1.76477 1.02765 1.09198 1.19039 1.25049 0.94530 0.93280 0.99594 1.19827 0.92986 0.93123 1.12573 1.20733 0.97816 0.91179 0.96492 1.18764 0.92912 0.92349 1.01455 1.17963 0.90382 0.92043 1.00100 1.20266 0.91434 0.97299 1.19437 1.17553 0.77031 0.93334 1.03315 1.91338 1.37765 1.90890 1.94543 1.21357 0.98894 0.91910 1.09465 1.17280 0.89942 0.93111 0.87102 1.19587 1.03069 0.90680 1.35220 0.89837 1.25966 0.93982 1.01965 0.92491 1.69813 1.12026 1.37815 1.21394 0.86258 0.78776 0.81349 0.80189 1.19435 1.19921 1.18249 1.21112 0.98109 0.91176 1.12879 1.20936 0.91359 0.99876 0.95410 1.19651 0.99679 0.88620 1.08829 1.18824 0.90638 0.89392 1.00745 0.91608 0.89972 0.89840 0.78854 0.85054 0.87768 0.85313 0.90507 0.87832 0.84581 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.01 11.39 59.85 0.68 1.69 16 2 N -0.42 -5.64 4.05 -65.42 -0.26 -5.90 16 3 N -0.26 -3.72 12.40 31.88 0.40 -3.33 16 4 C 0.07 0.96 12.29 -15.13 -0.19 0.78 16 5 C -0.18 -2.72 6.35 -105.22 -0.67 -3.39 16 6 C -0.04 -0.68 9.48 -38.88 -0.37 -1.05 16 7 C -0.05 -0.96 5.87 -104.91 -0.62 -1.57 16 8 C 0.00 -0.10 5.87 -104.98 -0.62 -0.71 16 9 C -0.26 -5.78 9.40 -38.90 -0.37 -6.15 16 10 C 0.11 2.56 7.28 -39.55 -0.29 2.27 16 11 F -0.17 -3.86 17.26 2.25 0.04 -3.82 16 12 C -0.20 -5.01 8.66 -38.75 -0.34 -5.35 16 13 C 0.13 3.23 5.56 -106.87 -0.59 2.64 16 14 C -0.46 -11.36 9.05 -37.74 -0.34 -11.70 16 15 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 16 C 0.08 1.79 5.14 -17.35 -0.09 1.70 16 17 N -0.79 -19.62 10.96 55.55 0.61 -19.01 16 18 Si 0.91 17.71 29.59 -169.99 -5.03 12.68 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 22 C -0.21 -4.82 9.16 -38.52 -0.35 -5.17 16 23 C -0.06 -0.88 9.34 -39.60 -0.37 -1.25 16 24 C -0.15 -2.04 9.92 -39.84 -0.40 -2.44 16 25 C 0.12 1.75 6.87 -84.11 -0.58 1.17 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.19 1.79 8.06 -52.48 -0.42 1.37 16 30 H 0.13 1.98 6.17 -52.49 -0.32 1.65 16 31 H 0.10 2.02 6.16 -52.49 -0.32 1.70 16 32 H 0.13 3.43 6.18 -52.49 -0.32 3.11 16 33 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 34 H 0.10 2.11 6.16 -52.49 -0.32 1.79 16 35 H 0.14 2.02 6.15 -52.49 -0.32 1.69 16 36 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -28.79 314.76 -8.27 -37.06 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -3.28 Total: 6.11 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -5.48 Total: -28.53 kcal Atomic # 7 Polarization: -28.98 SS G_CDS: 0.74 Total: -28.24 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.04 Total: -3.82 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.79 -8.27 -37.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241439608.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.889 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds