Wall clock time and date at job start Tue Mar 31 2020 08:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34087 * 125.04518 * 2 1 4 4 C 1.38399 * 107.82849 * 179.97438 * 3 2 1 5 5 C 1.40939 * 134.85763 * 180.02562 * 4 3 2 6 6 C 1.35955 * 120.56900 * 179.97438 * 5 4 3 7 7 C 1.38818 * 122.58141 * 0.02687 * 6 5 4 8 8 C 1.38864 * 121.34421 * 359.97438 * 7 6 5 9 9 C 1.47165 * 120.72916 * 179.97438 * 8 7 6 10 10 C 1.39732 * 120.62125 * 64.71990 * 9 8 7 11 11 C 1.37651 * 119.93245 * 179.70042 * 10 9 8 12 12 C 1.39175 * 121.29359 * 0.61521 * 11 10 9 13 13 F 1.35094 * 119.34557 * 179.69363 * 12 11 10 14 14 C 1.36426 * 121.30626 * 359.66514 * 12 11 10 15 15 C 1.40860 * 119.94631 * 0.02562 * 14 12 11 16 16 C 1.40675 * 120.61880 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00191 * 204.77084 * 16 15 14 18 18 C 1.39927 * 119.99776 * 24.77271 * 16 15 14 19 19 N 1.30861 * 120.00014 * 17.34777 * 18 16 15 20 20 Si 1.86802 * 119.99900 * 197.34000 * 18 16 15 21 21 H 1.48494 * 109.47175 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46621 * 120.00301 * 20 18 16 23 23 H 1.48498 * 109.47262 * 240.00406 * 20 18 16 24 24 C 1.46670 * 118.54775 * 359.97438 * 8 7 6 25 25 N 1.31516 * 134.93751 * 180.42068 * 24 8 7 26 26 H 1.08998 * 109.46553 * 90.00721 * 1 2 3 27 27 H 1.08993 * 109.47222 * 210.00441 * 1 2 3 28 28 H 1.08998 * 109.47118 * 330.00483 * 1 2 3 29 29 H 1.08003 * 126.08720 * 359.97438 * 3 2 1 30 30 H 1.08007 * 119.71257 * 359.97438 * 5 4 3 31 31 H 1.08001 * 118.71223 * 179.97438 * 6 5 4 32 32 H 1.08001 * 119.32958 * 180.02562 * 7 6 5 33 33 H 1.07995 * 120.03379 * 359.97438 * 10 9 8 34 34 H 1.08000 * 119.35229 * 180.28092 * 11 10 9 35 35 H 1.08003 * 120.02689 * 180.02562 * 14 12 11 36 36 H 0.97002 * 119.99970 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2350 1.0978 0.0000 4 6 3.5570 0.6881 0.0006 5 6 4.8022 1.3482 0.0013 6 6 5.9614 0.6377 0.0023 7 6 5.9875 -0.7502 0.0021 8 6 4.8153 -1.4947 0.0014 9 6 4.8587 -2.9657 0.0006 10 6 5.3927 -3.6626 1.0876 11 6 5.4206 -5.0388 1.0746 12 6 4.9363 -5.7614 -0.0118 13 9 4.9887 -7.1111 0.0145 14 6 4.4092 -5.1338 -1.1024 15 6 4.3483 -3.7271 -1.1431 16 6 3.8082 -3.0653 -2.2607 17 1 4.1063 -2.0516 -2.4843 18 6 2.8846 -3.7204 -3.0828 19 7 2.2671 -4.7901 -2.6504 20 14 2.5328 -3.0679 -4.7974 21 1 3.3549 -1.8561 -5.0442 22 1 2.8712 -4.1080 -5.8019 23 1 1.0933 -2.7211 -4.9095 24 6 3.5328 -0.7829 0.0014 25 7 2.2688 -1.1461 0.0077 26 1 -0.3632 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 1.8857 2.1198 -0.0004 30 1 4.8359 2.4277 0.0011 31 1 6.8987 1.1742 0.0024 32 1 6.9388 -1.2615 0.0033 33 1 5.7790 -3.1222 1.9391 34 1 5.8313 -5.5680 1.9218 35 1 4.0388 -5.7150 -1.9339 36 1 1.6266 -5.2440 -3.2201 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241470541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:33 Heat of formation + Delta-G solvation = 69.875672 kcal Electronic energy + Delta-G solvation = -22978.905297 eV Core-core repulsion = 19536.746025 eV Total energy + Delta-G solvation = -3442.159272 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.59732 -40.57688 -37.46185 -36.14305 -33.77843 -32.26076 -31.60505 -29.73262 -29.12748 -27.27544 -26.74114 -25.30372 -22.51121 -21.45424 -20.95298 -20.84316 -19.04521 -17.56770 -16.64139 -16.31636 -15.87243 -15.31002 -15.16481 -14.86921 -14.53339 -14.24900 -14.11814 -13.49220 -12.99864 -12.81749 -12.77560 -12.62710 -12.59193 -11.98920 -11.75998 -11.60179 -11.26322 -11.18515 -10.85144 -10.79246 -10.62007 -10.32712 -10.12735 -9.75363 -9.48390 -9.34836 -9.27038 -8.05369 -7.57539 -7.30418 -6.96857 -6.61246 -4.45728 1.16736 2.44186 2.61741 2.77490 2.84830 2.98981 3.05586 3.07798 3.14748 3.82605 4.42505 4.52032 4.63226 4.90454 5.18874 5.26114 5.41871 5.50708 5.53825 5.69837 5.76182 5.89494 5.97413 6.15676 6.26604 6.34501 6.44288 6.75424 6.91216 6.95441 7.08543 7.09499 7.16665 7.29702 7.33256 7.51852 7.52799 7.72680 7.84369 7.92527 8.15785 8.32708 8.49568 8.70704 8.82363 10.00231 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.011141 B = 0.007333 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.560581 B = 3817.384047 C = 5027.247559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.340 5.340 3 C 0.044 3.956 4 C -0.201 4.201 5 C -0.084 4.084 6 C -0.131 4.131 7 C -0.128 4.128 8 C 0.065 3.935 9 C -0.200 4.200 10 C -0.038 4.038 11 C -0.293 4.293 12 C 0.118 3.882 13 F -0.171 7.171 14 C -0.211 4.211 15 C 0.157 3.843 16 C -0.416 4.416 17 H 0.082 0.918 18 C 0.077 3.923 19 N -0.770 5.770 20 Si 0.906 3.094 21 H -0.257 1.257 22 H -0.268 1.268 23 H -0.274 1.274 24 C 0.116 3.884 25 N -0.258 5.258 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.174 0.826 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.129 0.871 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.980 11.092 2.134 11.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.116 5.116 3 C -0.109 4.109 4 C -0.211 4.211 5 C -0.104 4.104 6 C -0.151 4.151 7 C -0.150 4.150 8 C 0.062 3.938 9 C -0.202 4.202 10 C -0.056 4.056 11 C -0.313 4.313 12 C 0.099 3.901 13 F -0.150 7.150 14 C -0.231 4.231 15 C 0.154 3.846 16 C -0.443 4.443 17 H 0.100 0.900 18 C -0.144 4.144 19 N -0.393 5.393 20 Si 0.730 3.270 21 H -0.181 1.181 22 H -0.193 1.193 23 H -0.199 1.199 24 C -0.041 4.041 25 N -0.082 5.082 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.191 0.809 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.146 0.854 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.216 9.841 2.069 10.558 hybrid contribution 0.043 0.728 -0.789 1.074 sum -3.173 10.569 1.279 11.109 Atomic orbital electron populations 1.21908 0.74579 1.04416 1.03648 1.48666 1.07199 1.04382 1.51347 1.22399 0.90673 0.92800 1.05011 1.19539 0.92857 0.93779 1.14972 1.19898 0.90216 0.98026 1.02288 1.20212 0.97100 0.94085 1.03677 1.20965 0.96960 0.93172 1.03929 1.18728 0.87214 0.91824 0.96029 1.19404 1.14786 0.89519 0.96450 1.20338 0.96687 0.92675 0.95908 1.19960 1.17164 0.94208 0.99940 1.17427 1.00992 0.75074 0.96637 1.91326 1.94972 1.31569 1.97117 1.20904 1.07949 0.95550 0.98663 1.18235 0.86710 0.89963 0.89737 1.19443 1.18627 1.00207 1.06051 0.89977 1.25997 0.94374 0.94047 0.99944 1.69862 1.17636 1.15546 1.36217 0.86280 0.78935 0.80360 0.81468 1.18065 1.19324 1.19883 1.22130 0.91968 0.91567 0.98473 1.77846 1.01634 1.02536 1.26202 0.90419 0.88900 0.89632 0.80887 0.87279 0.87156 0.86125 0.88306 0.88458 0.85359 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 11.39 59.85 0.68 1.76 16 2 N -0.34 -5.70 3.95 -67.54 -0.27 -5.97 16 3 C 0.04 0.66 11.52 -16.51 -0.19 0.47 16 4 C -0.20 -3.64 6.34 -105.21 -0.67 -4.31 16 5 C -0.08 -1.33 10.03 -39.38 -0.40 -1.73 16 6 C -0.13 -2.12 9.83 -40.19 -0.39 -2.51 16 7 C -0.13 -2.43 9.69 -39.14 -0.38 -2.81 16 8 C 0.07 1.45 4.63 -102.64 -0.48 0.97 16 9 C -0.20 -4.89 5.58 -102.36 -0.57 -5.46 16 10 C -0.04 -0.87 9.76 -39.24 -0.38 -1.25 16 11 C -0.29 -6.91 9.95 -39.45 -0.39 -7.30 16 12 C 0.12 3.00 7.21 -39.89 -0.29 2.71 16 13 F -0.17 -4.19 17.23 2.25 0.04 -4.15 16 14 C -0.21 -5.65 8.60 -39.24 -0.34 -5.99 16 15 C 0.16 4.18 5.73 -104.63 -0.60 3.58 16 16 C -0.42 -10.90 8.18 -38.03 -0.31 -11.21 16 17 H 0.08 2.18 7.28 -52.49 -0.38 1.80 16 18 C 0.08 1.92 5.15 -17.33 -0.09 1.83 16 19 N -0.77 -19.73 10.96 55.55 0.61 -19.12 16 20 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 C 0.12 2.55 6.89 -80.99 -0.56 1.99 16 25 N -0.26 -5.75 12.52 34.35 0.43 -5.32 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.09 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.17 1.71 8.06 -52.48 -0.42 1.28 16 30 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 34 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 35 H 0.13 3.54 6.18 -52.48 -0.32 3.22 16 36 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -31.37 320.57 -8.38 -39.76 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.65 Total: 5.54 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: -5.35 Total: -29.25 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.77 Total: -30.41 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.04 Total: -4.15 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.37 -8.38 -39.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241470541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.633 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds