Wall clock time and date at job start Tue Mar 31 2020 07:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76202 * 103.00358 * 2 1 4 4 C 1.38973 * 120.08151 * 179.97438 * 3 2 1 5 5 C 1.38082 * 119.91781 * 180.02562 * 4 3 2 6 6 C 1.38304 * 120.07874 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.91604 * 179.97438 * 6 5 4 8 8 S 1.81404 * 109.47098 * 90.00084 * 7 6 5 9 9 C 1.81397 * 103.00143 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47527 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47118 * 300.00146 * 10 9 8 12 12 C 1.53000 * 109.46741 * 59.99726 * 10 9 8 13 13 C 1.50696 * 109.47289 * 179.97438 * 10 9 8 14 14 H 1.07996 * 120.00014 * 359.97438 * 13 10 9 15 15 C 1.37883 * 119.99840 * 180.02562 * 13 10 9 16 16 N 1.31510 * 119.99971 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99928 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46691 * 89.99547 * 17 15 13 19 19 H 1.48493 * 109.47368 * 209.99718 * 17 15 13 20 20 H 1.48502 * 109.46998 * 330.00098 * 17 15 13 21 21 C 1.38296 * 120.16251 * 0.26918 * 6 5 4 22 22 C 1.38083 * 120.08188 * 359.45236 * 21 6 5 23 23 H 1.09002 * 109.47221 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47525 * 300.00394 * 1 2 3 25 25 H 1.09003 * 109.47019 * 60.00050 * 1 2 3 26 26 H 1.08004 * 120.04096 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.95758 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.47060 * 210.00033 * 7 6 5 29 29 H 1.09001 * 109.47380 * 330.00121 * 7 6 5 30 30 H 1.09007 * 109.46846 * 299.99983 * 9 8 7 31 31 H 1.09007 * 109.47453 * 59.99610 * 9 8 7 32 32 H 1.09005 * 109.47158 * 59.99247 * 11 10 9 33 33 H 1.09000 * 109.47129 * 179.97438 * 11 10 9 34 34 H 1.08998 * 109.46828 * 299.99547 * 11 10 9 35 35 H 1.08997 * 109.47103 * 60.00139 * 12 10 9 36 36 H 1.09000 * 109.47035 * 180.02562 * 12 10 9 37 37 H 1.09003 * 109.47618 * 299.99978 * 12 10 9 38 38 H 0.97000 * 119.99838 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.95829 * 179.72606 * 21 6 5 40 40 H 1.08002 * 120.04180 * 180.26833 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5389 2.1250 0.0005 5 6 3.8457 3.4713 0.0011 6 6 2.8329 4.4130 0.0016 7 6 3.1720 5.8814 0.0028 8 16 3.3083 6.4719 -1.7071 9 6 3.7130 8.2281 -1.5013 10 6 3.8644 8.8812 -2.8765 11 6 4.9867 8.1865 -3.6503 12 6 2.5521 8.7477 -3.6517 13 6 4.2000 10.3404 -2.7055 14 1 4.2954 10.7600 -1.7150 15 6 4.3843 11.1398 -3.8137 16 7 4.2677 10.6289 -5.0198 17 14 4.7996 12.9487 -3.6017 18 1 6.2743 13.1145 -3.5446 19 1 4.2590 13.7187 -4.7506 20 1 4.1959 13.4508 -2.3413 21 6 1.5098 4.0106 0.0072 22 6 1.1953 2.6661 0.0009 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 4.3303 1.3900 0.0005 27 1 4.8779 3.7891 0.0019 28 1 2.3865 6.4353 0.5169 29 1 4.1208 6.0349 0.5169 30 1 2.9136 8.7230 -0.9496 31 1 4.6482 8.3233 -0.9493 32 1 4.7435 7.1311 -3.7739 33 1 5.0942 8.6515 -4.6302 34 1 5.9216 8.2817 -3.0980 35 1 1.7525 9.2425 -3.1004 36 1 2.6600 9.2126 -4.6316 37 1 2.3089 7.6923 -3.7754 38 1 4.3970 11.1914 -5.7994 39 1 0.7215 4.7489 0.0121 40 1 0.1618 2.3525 0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641102744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:01 Heat of formation + Delta-G solvation = 6.215145 kcal Electronic energy + Delta-G solvation = -18554.444273 eV Core-core repulsion = 15778.888850 eV Total energy + Delta-G solvation = -2775.555423 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 296.096 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.26781 -35.90973 -32.97351 -31.50241 -31.31901 -29.23981 -27.36226 -25.93709 -25.58410 -25.09571 -22.75450 -21.72633 -18.92664 -17.90194 -16.16865 -15.91527 -15.60507 -15.36865 -14.83669 -14.70330 -14.21080 -14.08418 -13.76747 -13.57619 -13.42317 -13.05007 -12.79525 -12.55639 -12.43421 -11.95541 -11.62427 -11.32627 -11.21642 -11.09786 -10.79656 -10.68688 -10.47470 -10.25173 -10.16091 -9.76774 -9.48595 -9.48092 -9.23515 -9.08647 -8.54368 -8.36293 -7.53769 -6.97848 -5.98072 -4.09659 0.93511 1.27717 1.28898 2.15414 2.35611 3.27831 3.29593 3.35349 3.38626 3.69777 4.40693 4.64067 4.70043 4.72667 4.75753 4.79328 5.13921 5.26298 5.27554 5.30974 5.49562 5.54220 5.75078 5.91462 6.02068 6.11727 6.15694 6.19279 6.51622 6.56903 6.77467 6.86618 7.01477 7.19182 7.20081 7.43193 7.67262 7.72898 8.09571 8.20912 8.43193 8.89756 9.55441 11.02633 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.043965 B = 0.002628 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.717494 B =10653.726170 C =10722.085541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.127 6.127 3 C -0.088 4.088 4 C -0.098 4.098 5 C -0.086 4.086 6 C -0.059 4.059 7 C -0.065 4.065 8 S -0.253 6.253 9 C -0.057 4.057 10 C 0.083 3.917 11 C -0.132 4.132 12 C -0.132 4.132 13 C -0.507 4.507 14 H 0.054 0.946 15 C 0.067 3.933 16 N -0.883 5.883 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.085 4.085 22 C -0.132 4.132 23 H 0.106 0.894 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.082 0.918 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.082 0.918 37 H 0.021 0.979 38 H 0.260 0.740 39 H 0.128 0.872 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 -17.715 10.723 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.115 5.885 3 C -0.201 4.201 4 C -0.122 4.122 5 C -0.107 4.107 6 C -0.062 4.062 7 C -0.212 4.212 8 S -0.023 6.023 9 C -0.205 4.205 10 C 0.081 3.919 11 C -0.190 4.190 12 C -0.190 4.190 13 C -0.547 4.547 14 H 0.072 0.928 15 C -0.135 4.135 16 N -0.521 5.521 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.107 4.107 22 C -0.155 4.155 23 H 0.125 0.875 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.101 0.899 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.146 0.854 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.353 -19.265 9.596 22.178 hybrid contribution -0.454 2.902 1.246 3.190 sum -5.807 -16.363 10.842 20.470 Atomic orbital electron populations 1.23657 0.94777 1.06971 1.05772 1.85414 1.06476 1.03720 1.92908 1.21660 0.96776 0.96061 1.05582 1.20694 0.94158 0.95976 1.01330 1.20997 0.99428 0.91896 0.98380 1.19367 0.93439 0.93723 0.99703 1.22330 1.04527 0.94628 0.99753 1.87170 1.93436 1.14162 1.07506 1.23870 1.02023 0.89533 1.05041 1.17946 0.93471 0.93681 0.86774 1.21851 0.97363 0.96586 1.03183 1.21848 0.96607 0.97313 1.03187 1.21038 1.48093 0.92920 0.92622 0.92775 1.24890 0.95077 0.98295 0.95232 1.69830 1.49471 1.35340 0.97468 0.86597 0.78549 0.85169 0.77669 1.20714 1.21203 1.20030 1.20943 0.96021 0.95278 0.98415 1.21084 0.98044 0.92994 1.03418 0.87510 0.89766 0.89632 0.85469 0.85162 0.89829 0.89753 0.91706 0.91680 0.96013 0.89886 0.95745 0.95770 0.89884 0.96042 0.92982 0.85430 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.15 101.05 0.92 0.00 16 2 S -0.13 -1.23 22.56 -107.50 -2.43 -3.65 16 3 C -0.09 -1.01 6.11 -39.03 -0.24 -1.25 16 4 C -0.10 -1.15 9.79 -39.37 -0.39 -1.53 16 5 C -0.09 -1.06 9.69 -39.61 -0.38 -1.44 16 6 C -0.06 -0.77 5.14 -104.58 -0.54 -1.31 16 7 C -0.07 -0.91 6.07 36.01 0.22 -0.70 16 8 S -0.25 -4.63 18.77 -107.50 -2.02 -6.65 16 9 C -0.06 -1.17 4.88 37.16 0.18 -0.99 16 10 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 11 C -0.13 -3.21 8.01 37.16 0.30 -2.92 16 12 C -0.13 -3.20 8.01 37.16 0.30 -2.90 16 13 C -0.51 -13.44 8.01 -34.44 -0.28 -13.72 16 14 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 15 C 0.07 1.79 5.15 -17.82 -0.09 1.69 16 16 N -0.88 -24.27 9.35 55.43 0.52 -23.75 16 17 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C -0.09 -1.04 9.69 -39.62 -0.38 -1.42 16 22 C -0.13 -1.47 9.36 -39.36 -0.37 -1.84 16 23 H 0.11 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.08 0.49 7.75 -51.92 -0.40 0.08 16 25 H 0.08 0.54 7.75 -51.92 -0.40 0.13 16 26 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 27 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.08 1.09 8.08 -51.92 -0.42 0.67 16 29 H 0.08 1.10 8.08 -51.92 -0.42 0.68 16 30 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 31 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 32 H 0.02 0.49 6.92 -51.93 -0.36 0.13 16 33 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 37 H 0.02 0.48 6.92 -51.93 -0.36 0.12 16 38 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.12 1.09 5.88 -52.49 -0.31 0.78 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -28.07 345.59 -10.79 -38.86 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.22 Total: 0.59 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -0.83 Total: -26.41 kcal Atomic # 7 Polarization: -24.27 SS G_CDS: 0.52 Total: -23.75 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -4.44 Total: -10.30 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.07 -10.79 -38.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641102744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.080 kcal (2) G-P(sol) polarization free energy of solvation -28.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds