Wall clock time and date at job start Tue Mar 31 2020 08:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47229 * 2 1 4 4 N 1.46500 * 109.47098 * 240.00287 * 2 1 3 5 5 C 1.34773 * 120.00431 * 85.00044 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.47021 * 125.64884 * 359.95972 * 7 5 4 9 9 C 1.54331 * 107.26526 * 178.85291 * 8 7 5 10 10 C 1.55157 * 103.02099 * 338.14342 * 9 8 7 11 11 O 1.42904 * 111.00388 * 277.23310 * 10 9 8 12 12 C 1.50703 * 111.03553 * 153.39629 * 10 9 8 13 13 H 1.08003 * 120.00121 * 6.33012 * 12 10 9 14 14 C 1.37879 * 119.99845 * 186.32659 * 12 10 9 15 15 N 1.31515 * 119.99943 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00046 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46947 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47118 * 120.00395 * 16 14 12 19 19 H 1.48501 * 109.47539 * 240.00655 * 16 14 12 20 20 C 1.47423 * 125.64535 * 180.27500 * 7 5 4 21 21 C 1.52998 * 109.47309 * 119.99858 * 2 1 3 22 22 F 1.39897 * 109.47153 * 180.02562 * 21 2 1 23 23 F 1.39904 * 109.47202 * 300.00089 * 21 2 1 24 24 F 1.39902 * 109.46913 * 60.00105 * 21 2 1 25 25 H 1.09004 * 109.47132 * 59.99646 * 1 2 3 26 26 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47061 * 300.00108 * 1 2 3 28 28 H 0.97000 * 119.99456 * 264.99607 * 4 2 1 29 29 H 1.09003 * 109.88257 * 298.40212 * 8 7 5 30 30 H 1.09000 * 109.88161 * 59.56145 * 8 7 5 31 31 H 1.09003 * 110.84977 * 219.67319 * 9 8 7 32 32 H 1.08999 * 110.51339 * 96.45584 * 9 8 7 33 33 H 0.96695 * 114.00220 * 173.65427 * 11 10 9 34 34 H 0.96998 * 119.99612 * 179.97438 * 15 14 12 35 35 H 1.09000 * 110.36923 * 322.92470 * 20 7 5 36 36 H 1.09005 * 110.36919 * 85.14325 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8574 1.1614 -2.4119 7 7 2.6015 -0.6522 -3.4562 8 6 2.9920 -2.0678 -3.5289 9 6 3.4168 -2.3515 -4.9853 10 6 2.7126 -1.2211 -5.7813 11 8 1.3531 -1.5614 -6.0604 12 6 3.4599 -0.9081 -7.0521 13 1 4.3008 -1.5177 -7.3482 14 6 3.0699 0.1565 -7.8367 15 7 2.0462 0.8991 -7.4758 16 14 3.9965 0.5450 -9.4114 17 1 5.0999 -0.4326 -9.5904 18 1 3.0673 0.4591 -10.5665 19 1 4.5588 1.9170 -9.3294 20 6 2.7955 -0.0395 -4.7830 21 6 2.0400 -0.7212 1.2492 22 9 3.4390 -0.7207 1.2495 23 9 1.5737 -0.0617 2.3915 24 9 1.5737 -2.0402 1.2492 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.2490 -1.6317 -1.1526 29 1 3.8265 -2.2573 -2.8537 30 1 2.1453 -2.7001 -3.2617 31 1 3.0620 -3.3300 -5.3092 32 1 4.4994 -2.2791 -5.0884 33 1 0.8451 -0.8479 -6.4701 34 1 1.7721 1.6483 -8.0276 35 1 2.0062 0.6844 -4.9856 36 1 3.7728 0.4398 -4.8403 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678658313.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:19 Heat of formation + Delta-G solvation = -232.249568 kcal Electronic energy + Delta-G solvation = -25135.385643 eV Core-core repulsion = 20818.586788 eV Total energy + Delta-G solvation = -4316.798855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.113 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -50.34681 -47.85270 -47.80405 -39.89362 -37.67199 -35.45491 -34.31531 -32.25717 -31.28894 -29.70236 -27.77979 -26.59763 -25.09667 -23.00037 -21.88160 -20.02115 -19.72184 -18.70193 -18.54201 -18.33205 -17.19528 -16.90196 -15.82886 -15.34431 -15.12101 -14.74106 -14.69183 -14.46107 -14.26322 -14.14502 -13.97494 -13.96514 -13.79449 -13.32425 -13.06197 -12.86127 -12.66112 -12.21248 -12.09727 -11.69770 -11.54282 -11.40011 -11.07512 -10.86559 -10.64795 -10.48380 -10.22627 -9.81778 -9.40930 -9.24846 -8.72945 -8.40705 -7.81185 -6.30370 -4.40107 2.33427 2.76308 3.18738 3.27825 3.30951 3.44755 3.54507 3.85757 3.97192 4.23195 4.31888 4.80437 4.91290 4.96874 5.34879 5.38715 5.54941 5.59417 5.71432 5.95828 5.98870 6.02370 6.32152 6.46235 6.64825 6.81452 6.83852 7.14167 7.26512 7.46400 7.71803 7.99798 8.34519 8.64153 8.91279 9.27090 9.35450 10.76771 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.033452 B = 0.003738 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.830005 B = 7489.421283 C = 7689.183005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.126 3.874 3 H 0.129 0.871 4 N -0.746 5.746 5 C 0.723 3.277 6 O -0.590 6.590 7 N -0.623 5.623 8 C 0.102 3.898 9 C -0.115 4.115 10 C 0.248 3.752 11 O -0.582 6.582 12 C -0.538 4.538 13 H 0.068 0.932 14 C 0.072 3.928 15 N -0.892 5.892 16 Si 0.904 3.096 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.113 3.887 21 C 0.447 3.553 22 F -0.178 7.178 23 F -0.176 7.176 24 F -0.180 7.180 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.399 0.601 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.381 0.619 34 H 0.270 0.730 35 H 0.087 0.913 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 -4.253 14.798 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.018 3.982 3 H 0.147 0.853 4 N -0.405 5.405 5 C 0.425 3.575 6 O -0.468 6.468 7 N -0.359 5.359 8 C -0.022 4.022 9 C -0.153 4.153 10 C 0.208 3.792 11 O -0.391 6.391 12 C -0.576 4.576 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.531 5.531 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.009 4.009 21 C 0.392 3.608 22 F -0.159 7.159 23 F -0.157 7.157 24 F -0.162 7.162 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.234 0.766 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.231 0.769 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.856 -3.761 15.020 15.507 hybrid contribution 0.535 0.215 -0.735 0.934 sum -0.322 -3.546 14.284 14.721 Atomic orbital electron populations 1.22267 0.91876 1.03928 1.04711 1.21790 0.97180 0.98469 0.80770 0.85280 1.44920 1.73511 1.13800 1.08253 1.15326 0.78490 0.84445 0.79211 1.90909 1.57837 1.14106 1.83977 1.47937 1.66401 1.11335 1.10224 1.21997 0.98260 0.82571 0.99336 1.22593 1.00447 1.00506 0.91790 1.19641 0.81000 0.87589 0.91007 1.86105 1.24414 1.44709 1.83862 1.21494 1.15769 1.13907 1.06465 0.91429 1.25079 0.94776 0.95168 0.98174 1.69724 1.26047 1.18569 1.38714 0.86350 0.79770 0.78280 0.82514 1.19580 1.20749 1.20757 1.23214 1.01564 0.98747 0.77334 1.20812 0.75828 0.77836 0.86361 1.93221 1.29589 1.96342 1.96761 1.93193 1.88482 1.80722 1.53317 1.93186 1.88412 1.37819 1.96757 0.89270 0.91151 0.90482 0.76559 0.92902 0.92445 0.90648 0.90330 0.76892 0.92020 0.89469 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 9.24 37.16 0.34 -1.49 16 2 C 0.13 1.53 2.55 -67.93 -0.17 1.36 16 3 H 0.13 1.65 7.58 -51.92 -0.39 1.26 16 4 N -0.75 -10.70 4.94 -58.68 -0.29 -10.99 16 5 C 0.72 13.87 8.45 -86.92 -0.73 13.14 16 6 O -0.59 -13.31 16.26 5.28 0.09 -13.23 16 7 N -0.62 -12.39 3.33 -176.23 -0.59 -12.97 16 8 C 0.10 1.70 6.15 -3.06 -0.02 1.68 16 9 C -0.12 -2.20 6.13 -24.89 -0.15 -2.35 16 10 C 0.25 5.82 0.87 -89.62 -0.08 5.74 16 11 O -0.58 -14.39 13.16 -35.23 -0.46 -14.86 16 12 C -0.54 -13.67 8.27 -34.44 -0.28 -13.95 16 13 H 0.07 1.69 7.79 -52.48 -0.41 1.28 16 14 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 15 N -0.89 -23.36 10.69 55.43 0.59 -22.77 16 16 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 C 0.11 2.64 5.38 -2.53 -0.01 2.63 16 21 C 0.45 4.87 2.75 37.16 0.10 4.98 16 22 F -0.18 -2.13 17.24 2.25 0.04 -2.09 16 23 F -0.18 -1.84 16.80 2.25 0.04 -1.81 16 24 F -0.18 -1.94 16.44 2.25 0.04 -1.90 16 25 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.07 0.71 7.80 -51.93 -0.41 0.30 16 27 H 0.08 0.67 7.80 -51.93 -0.41 0.27 16 28 H 0.40 5.00 7.29 -40.82 -0.30 4.71 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 33 H 0.38 9.71 7.56 45.56 0.34 10.06 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.09 2.30 7.33 -51.93 -0.38 1.92 16 36 H 0.06 1.44 8.03 -51.93 -0.42 1.03 16 LS Contribution 314.89 15.07 4.75 4.75 Total: -1.00 -28.41 314.89 -5.53 -33.94 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -3.61 Total: 13.48 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: -1.11 Total: 13.46 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.28 Total: -46.73 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.38 Total: -28.08 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.11 Total: -5.80 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.41 -5.53 -33.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678658313.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.305 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds