Wall clock time and date at job start Tue Mar 31 2020 07:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 N 1.46496 * 109.46793 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99829 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99756 * 359.97438 * 5 4 3 7 7 C 1.38805 * 120.00159 * 180.02562 * 5 4 3 8 8 N 1.31624 * 120.00081 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00242 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47218 * 59.99590 * 9 7 5 11 11 H 1.48501 * 109.47330 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47304 * 299.99621 * 9 7 5 13 13 N 1.46503 * 109.47082 * 120.00178 * 2 1 3 14 14 C 1.34771 * 119.99813 * 304.29578 * 13 2 1 15 15 O 1.21626 * 120.00268 * 354.98610 * 14 13 2 16 16 C 1.47177 * 120.00125 * 174.98845 * 14 13 2 17 17 C 1.38241 * 128.48043 * 180.02562 * 16 14 13 18 18 N 1.31240 * 111.89167 * 180.26685 * 17 16 14 19 19 N 1.27333 * 120.03280 * 359.50235 * 18 17 16 20 20 S 1.56638 * 109.74726 * 0.48259 * 19 18 17 21 21 C 1.52996 * 109.46763 * 240.00154 * 2 1 3 22 22 C 1.53004 * 117.50225 * 12.75390 * 21 2 1 23 23 C 1.53001 * 117.50194 * 304.09303 * 21 2 1 24 24 H 1.09001 * 109.46953 * 299.99658 * 1 2 3 25 25 H 1.08998 * 109.47046 * 59.99616 * 1 2 3 26 26 H 1.09001 * 109.46877 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47011 * 300.00054 * 3 2 1 28 28 H 1.09001 * 109.46969 * 60.00352 * 3 2 1 29 29 H 0.96995 * 120.00252 * 0.02562 * 4 3 2 30 30 H 0.96998 * 120.00425 * 180.02562 * 8 7 5 31 31 H 0.96999 * 119.99942 * 124.29534 * 13 2 1 32 32 H 1.08000 * 124.05209 * 359.97438 * 17 16 14 33 33 H 1.09003 * 115.54865 * 158.42722 * 21 2 1 34 34 H 1.08997 * 117.49479 * 359.97438 * 22 21 2 35 35 H 1.08995 * 117.49669 * 145.01970 * 22 21 2 36 36 H 1.08995 * 117.50332 * 214.98245 * 23 21 2 37 37 H 1.09010 * 117.49629 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1898 2.6284 -0.0002 6 1 3.6497 3.5637 0.0002 7 6 5.5778 2.6284 -0.0013 8 7 6.2360 1.4885 -0.0023 9 14 6.5118 4.2461 -0.0015 10 1 6.1540 5.0244 1.2116 11 1 7.9719 3.9747 -0.0021 12 1 6.1522 5.0252 -1.2134 13 7 2.0184 -0.6907 1.1962 14 6 1.6230 -0.2829 2.4183 15 8 0.9347 0.7132 2.5339 16 6 2.0241 -1.0428 3.6132 17 6 1.7212 -0.7865 4.9374 18 7 2.2547 -1.6753 5.7423 19 7 2.9463 -2.6325 5.2660 20 16 3.0146 -2.5109 3.7059 21 6 2.0400 -0.7212 -1.2493 22 6 1.0275 -1.0154 -2.3580 23 6 1.5582 -2.1543 -1.4838 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.9900 0.6024 -0.0013 30 1 7.2059 1.4885 -0.0027 31 1 2.6264 -1.4414 1.1085 32 1 1.1216 0.0479 5.2701 33 1 3.0589 -0.4773 -1.5499 34 1 -0.0020 -0.6954 -2.1972 35 1 1.3804 -0.9652 -3.3880 36 1 2.2600 -2.8531 -1.9391 37 1 0.8776 -2.5832 -0.7482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698644635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:32 Heat of formation + Delta-G solvation = 84.508852 kcal Electronic energy + Delta-G solvation = -22044.577452 eV Core-core repulsion = 18758.416635 eV Total energy + Delta-G solvation = -3286.160817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.87198 -40.11677 -37.86089 -34.76640 -33.64141 -32.31626 -31.14090 -29.77954 -27.45813 -25.94285 -24.06523 -22.77218 -22.33453 -22.12796 -20.41419 -19.31920 -18.87628 -17.53880 -17.21288 -15.89330 -15.78252 -15.59241 -15.04391 -14.64024 -14.48955 -14.30116 -13.80767 -13.28288 -12.87778 -12.66690 -12.45462 -12.23237 -12.04659 -11.98181 -11.50116 -11.15555 -10.95098 -10.82727 -10.79427 -10.33942 -10.28358 -10.14932 -10.11336 -9.92927 -9.85049 -9.73710 -9.67479 -8.84042 -8.81523 -6.89140 -5.77239 -3.03803 -0.28477 0.77831 1.43872 1.95608 2.97826 3.15650 3.44509 3.48836 3.49988 3.93963 4.03070 4.58761 4.64811 4.69007 4.80467 5.00387 5.09602 5.26849 5.35557 5.53274 5.58410 5.60995 5.70804 5.90216 5.95346 6.10621 6.17365 6.20098 6.34565 6.40695 6.59270 6.78375 6.97573 7.51471 7.63989 7.71624 8.22548 8.42240 9.53812 10.10341 10.45993 11.45792 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.011186 B = 0.006075 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.585518 B = 4608.008818 C = 6040.919509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.203 3.797 3 C 0.143 3.857 4 N -0.726 5.726 5 C -0.232 4.232 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.937 5.937 9 Si 0.906 3.094 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 N -0.698 5.698 14 C 0.606 3.394 15 O -0.510 6.510 16 C -0.271 4.271 17 C 0.067 3.933 18 N -0.254 5.254 19 N -0.265 5.265 20 S 0.422 5.578 21 C -0.153 4.153 22 C -0.170 4.170 23 C -0.184 4.184 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.028 0.972 28 H 0.046 0.954 29 H 0.381 0.619 30 H 0.254 0.746 31 H 0.398 0.602 32 H 0.215 0.785 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.220 -10.963 1.064 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.118 3.882 3 C 0.015 3.985 4 N -0.371 5.371 5 C -0.364 4.364 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.586 5.586 9 Si 0.737 3.263 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 N -0.349 5.349 14 C 0.389 3.611 15 O -0.386 6.386 16 C -0.413 4.413 17 C -0.100 4.100 18 N -0.118 5.118 19 N -0.246 5.246 20 S 0.557 5.443 21 C -0.171 4.171 22 C -0.207 4.207 23 C -0.221 4.221 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.215 0.785 30 H 0.064 0.936 31 H 0.232 0.768 32 H 0.231 0.769 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.671 -11.641 1.729 15.886 hybrid contribution 0.447 1.563 -0.186 1.636 sum -10.224 -10.078 1.543 14.438 Atomic orbital electron populations 1.22308 0.94294 1.01880 1.03946 1.20135 0.93332 0.93277 0.81489 1.21088 0.86568 0.91355 0.99485 1.42225 0.99111 1.06206 1.89533 1.19185 0.88997 0.86175 1.42010 0.91325 1.24676 0.96310 0.96736 1.03298 1.69625 1.06771 1.23876 1.58308 0.86285 0.78920 0.83253 0.77855 1.21386 1.21766 1.21304 1.45820 1.48760 1.35354 1.04919 1.16337 0.80358 0.83339 0.81106 1.90789 1.38401 1.23911 1.85460 1.28221 1.08911 1.04251 0.99882 1.24424 0.99259 0.99383 0.86925 1.70670 1.08561 1.00381 1.32193 1.78823 1.18591 1.19974 1.07224 1.82622 1.35504 1.16043 1.10143 1.22573 1.01010 0.97109 0.96443 1.23066 0.99204 1.02552 0.95886 1.22982 1.04034 0.91499 1.03558 0.90073 0.91121 0.92756 0.95473 0.93657 0.78482 0.93606 0.76798 0.76886 0.85746 0.88177 0.88745 0.88742 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 6.98 37.16 0.26 -1.92 16 2 C 0.20 3.08 0.54 -131.81 -0.07 3.00 16 3 C 0.14 2.88 5.03 -4.04 -0.02 2.86 16 4 N -0.73 -17.62 5.04 -59.91 -0.30 -17.92 16 5 C -0.23 -6.44 9.99 -15.06 -0.15 -6.59 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 8 N -0.94 -27.51 13.06 55.49 0.72 -26.79 16 9 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 N -0.70 -10.14 4.72 -48.74 -0.23 -10.37 16 14 C 0.61 9.49 7.21 -12.63 -0.09 9.40 16 15 O -0.51 -9.29 13.21 5.25 0.07 -9.22 16 16 C -0.27 -3.69 6.81 -35.95 -0.24 -3.93 16 17 C 0.07 0.87 11.55 -17.80 -0.21 0.67 16 18 N -0.25 -3.60 11.54 30.36 0.35 -3.25 16 19 N -0.26 -3.65 12.51 60.35 0.75 -2.90 16 20 S 0.42 4.86 23.06 -107.50 -2.48 2.38 16 21 C -0.15 -2.12 4.84 -90.62 -0.44 -2.55 16 22 C -0.17 -1.92 9.64 -26.69 -0.26 -2.17 16 23 C -0.18 -1.95 9.82 -26.69 -0.26 -2.21 16 24 H 0.08 1.20 6.03 -51.93 -0.31 0.89 16 25 H 0.07 0.85 6.78 -51.93 -0.35 0.50 16 26 H 0.05 0.61 6.99 -51.93 -0.36 0.25 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 1.01 6.32 -51.93 -0.33 0.68 16 29 H 0.38 9.44 6.62 -40.82 -0.27 9.17 16 30 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.40 5.07 7.92 -40.82 -0.32 4.75 16 32 H 0.21 2.33 8.06 -52.49 -0.42 1.90 16 33 H 0.12 2.10 7.08 -51.93 -0.37 1.74 16 34 H 0.10 1.03 5.88 -51.93 -0.31 0.73 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.09 0.89 7.35 -51.92 -0.38 0.51 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -32.00 321.51 -7.11 -39.11 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.24 Total: 10.59 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -1.58 Total: -3.96 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 1.30 Total: -61.22 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.07 Total: -9.22 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -2.48 Total: 2.38 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.00 -7.11 -39.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698644635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.619 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds