Wall clock time and date at job start Tue Mar 31 2020 07:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 N 1.46496 * 109.46793 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99829 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99756 * 359.97438 * 5 4 3 7 7 C 1.38805 * 120.00159 * 180.02562 * 5 4 3 8 8 N 1.31624 * 120.00081 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00242 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47218 * 59.99590 * 9 7 5 11 11 H 1.48501 * 109.47330 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47304 * 299.99621 * 9 7 5 13 13 N 1.46503 * 109.47082 * 120.00178 * 2 1 3 14 14 C 1.34771 * 119.99813 * 304.29578 * 13 2 1 15 15 O 1.21626 * 120.00268 * 354.98610 * 14 13 2 16 16 C 1.47177 * 120.00125 * 174.98845 * 14 13 2 17 17 C 1.38241 * 128.48043 * 180.02562 * 16 14 13 18 18 N 1.31240 * 111.89167 * 180.26685 * 17 16 14 19 19 N 1.27333 * 120.03280 * 359.50235 * 18 17 16 20 20 S 1.56638 * 109.74726 * 0.48259 * 19 18 17 21 21 C 1.52996 * 109.46763 * 240.00154 * 2 1 3 22 22 C 1.53004 * 117.50225 * 12.75390 * 21 2 1 23 23 C 1.53001 * 117.50194 * 304.09303 * 21 2 1 24 24 H 1.09001 * 109.46953 * 299.99658 * 1 2 3 25 25 H 1.08998 * 109.47046 * 59.99616 * 1 2 3 26 26 H 1.09001 * 109.46877 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47011 * 300.00054 * 3 2 1 28 28 H 1.09001 * 109.46969 * 60.00352 * 3 2 1 29 29 H 0.96995 * 120.00252 * 0.02562 * 4 3 2 30 30 H 0.96998 * 120.00425 * 180.02562 * 8 7 5 31 31 H 0.96999 * 119.99942 * 124.29534 * 13 2 1 32 32 H 1.08000 * 124.05209 * 359.97438 * 17 16 14 33 33 H 1.09003 * 115.54865 * 158.42722 * 21 2 1 34 34 H 1.08997 * 117.49479 * 359.97438 * 22 21 2 35 35 H 1.08995 * 117.49669 * 145.01970 * 22 21 2 36 36 H 1.08995 * 117.50332 * 214.98245 * 23 21 2 37 37 H 1.09010 * 117.49629 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1898 2.6284 -0.0002 6 1 3.6497 3.5637 0.0002 7 6 5.5778 2.6284 -0.0013 8 7 6.2360 1.4885 -0.0023 9 14 6.5118 4.2461 -0.0015 10 1 6.1540 5.0244 1.2116 11 1 7.9719 3.9747 -0.0021 12 1 6.1522 5.0252 -1.2134 13 7 2.0184 -0.6907 1.1962 14 6 1.6230 -0.2829 2.4183 15 8 0.9347 0.7132 2.5339 16 6 2.0241 -1.0428 3.6132 17 6 1.7212 -0.7865 4.9374 18 7 2.2547 -1.6753 5.7423 19 7 2.9463 -2.6325 5.2660 20 16 3.0146 -2.5109 3.7059 21 6 2.0400 -0.7212 -1.2493 22 6 1.0275 -1.0154 -2.3580 23 6 1.5582 -2.1543 -1.4838 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.9900 0.6024 -0.0013 30 1 7.2059 1.4885 -0.0027 31 1 2.6264 -1.4414 1.1085 32 1 1.1216 0.0479 5.2701 33 1 3.0589 -0.4773 -1.5499 34 1 -0.0020 -0.6954 -2.1972 35 1 1.3804 -0.9652 -3.3880 36 1 2.2600 -2.8531 -1.9391 37 1 0.8776 -2.5832 -0.7482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698644635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:31 Heat of formation + Delta-G solvation = 61.876615 kcal Electronic energy + Delta-G solvation = -22045.558859 eV Core-core repulsion = 18758.416635 eV Total energy + Delta-G solvation = -3287.142224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.95117 -41.29990 -39.00935 -36.36592 -35.11314 -33.56914 -32.76836 -31.20358 -28.53490 -27.56597 -25.43218 -24.29080 -23.66160 -23.07416 -21.53499 -20.39456 -20.07589 -19.23992 -18.61938 -17.04583 -16.96930 -16.82095 -16.44682 -16.16278 -15.75735 -15.47831 -15.28126 -14.96255 -14.27919 -13.81828 -13.80763 -13.69686 -13.24275 -13.06949 -12.99572 -12.77459 -12.48644 -12.23949 -12.08073 -12.00777 -11.75913 -11.35992 -11.27950 -11.14893 -11.07471 -10.95323 -10.86780 -10.77585 -10.08870 -8.93398 -7.94557 -5.20003 -1.33937 -0.23096 0.42386 0.89320 1.45420 1.47275 1.53143 1.82083 1.98933 2.55633 2.93549 3.05130 3.38331 3.56006 3.65156 3.72664 3.91811 3.95760 4.19289 4.26732 4.47672 4.57020 4.62583 4.81813 4.88490 4.90165 5.00783 5.06887 5.14605 5.28869 5.36732 5.46677 5.49901 5.56226 6.28154 6.39278 6.56771 7.04127 7.36156 8.10797 8.38490 9.28022 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.011186 B = 0.006075 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.585518 B = 4608.008818 C = 6040.919509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.211 3.789 3 C 0.143 3.857 4 N -0.729 5.729 5 C -0.242 4.242 6 H 0.065 0.935 7 C -0.068 4.068 8 N -0.962 5.962 9 Si 0.965 3.035 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.278 1.278 13 N -0.693 5.693 14 C 0.604 3.396 15 O -0.541 6.541 16 C -0.298 4.298 17 C 0.072 3.928 18 N -0.274 5.274 19 N -0.288 5.288 20 S 0.498 5.502 21 C -0.179 4.179 22 C -0.161 4.161 23 C -0.157 4.157 24 H 0.062 0.938 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.024 0.976 28 H 0.022 0.978 29 H 0.377 0.623 30 H 0.251 0.749 31 H 0.406 0.594 32 H 0.229 0.771 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.950 -12.187 0.454 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.126 3.874 3 C 0.016 3.984 4 N -0.373 5.373 5 C -0.374 4.374 6 H 0.083 0.917 7 C -0.261 4.261 8 N -0.613 5.613 9 Si 0.794 3.206 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.205 1.205 13 N -0.344 5.344 14 C 0.388 3.612 15 O -0.420 6.420 16 C -0.439 4.439 17 C -0.095 4.095 18 N -0.137 5.137 19 N -0.270 5.270 20 S 0.632 5.368 21 C -0.198 4.198 22 C -0.198 4.198 23 C -0.194 4.194 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.211 0.789 30 H 0.059 0.941 31 H 0.242 0.758 32 H 0.245 0.755 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.419 -12.885 1.114 17.253 hybrid contribution 0.674 1.918 -0.039 2.034 sum -10.745 -10.967 1.075 15.391 Atomic orbital electron populations 1.22244 0.92237 1.03454 1.03635 1.19961 0.94632 0.90375 0.82436 1.21146 0.84254 0.95066 0.97963 1.42289 1.00773 1.05031 1.89177 1.19499 0.89586 0.87264 1.41067 0.91739 1.25370 0.97117 0.99652 1.03923 1.69754 1.06555 1.25419 1.59558 0.85347 0.77401 0.79919 0.77911 1.21262 1.21889 1.20468 1.45817 1.48667 1.35321 1.04601 1.16573 0.79830 0.83044 0.81750 1.90773 1.39868 1.25338 1.86003 1.28091 1.10654 1.05807 0.99363 1.24699 0.98708 0.99368 0.86743 1.70733 1.09363 1.00838 1.32732 1.78624 1.18976 1.20358 1.08997 1.82308 1.32902 1.13555 1.07991 1.22267 1.00061 1.00361 0.97063 1.23198 0.99038 1.02157 0.95440 1.23085 1.03443 0.89911 1.02934 0.91890 0.89959 0.90134 0.95821 0.95972 0.78939 0.94058 0.75803 0.75504 0.89262 0.86767 0.88324 0.87617 0.87224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 6.98 71.99 0.50 -3.35 16 2 C 0.21 6.26 0.54 3.61 0.00 6.27 16 3 C 0.14 5.86 5.03 86.38 0.43 6.29 16 4 N -0.73 -36.08 5.04 -343.46 -1.73 -37.81 16 5 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 6 H 0.06 3.60 7.83 -2.91 -0.02 3.58 16 7 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 8 N -0.96 -57.05 13.06 21.65 0.28 -56.77 16 9 Si 0.96 46.52 29.55 68.60 2.03 48.54 16 10 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 13 N -0.69 -19.61 4.72 -426.38 -2.01 -21.63 16 14 C 0.60 18.72 7.21 86.59 0.62 19.34 16 15 O -0.54 -19.98 13.21 -4.11 -0.05 -20.03 16 16 C -0.30 -7.85 6.81 24.62 0.17 -7.69 16 17 C 0.07 1.85 11.55 84.78 0.98 2.83 16 18 N -0.27 -7.53 11.54 -57.87 -0.67 -8.20 16 19 N -0.29 -7.58 12.51 37.02 0.46 -7.12 16 20 S 0.50 10.62 23.06 -56.49 -1.30 9.32 16 21 C -0.18 -4.73 4.84 -10.79 -0.05 -4.79 16 22 C -0.16 -3.21 9.64 30.62 0.30 -2.91 16 23 C -0.16 -2.84 9.82 30.62 0.30 -2.53 16 24 H 0.06 1.81 6.03 -2.39 -0.01 1.80 16 25 H 0.08 1.80 6.78 -2.39 -0.02 1.78 16 26 H 0.08 1.55 6.99 -2.39 -0.02 1.53 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.02 1.02 6.32 -2.39 -0.02 1.01 16 29 H 0.38 19.07 6.62 -92.71 -0.61 18.46 16 30 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.41 9.85 7.92 -92.71 -0.73 9.12 16 32 H 0.23 4.88 8.06 -2.91 -0.02 4.85 16 33 H 0.09 3.05 7.08 -2.39 -0.02 3.03 16 34 H 0.11 1.96 5.88 -2.39 -0.01 1.95 16 35 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.11 1.64 7.35 -2.38 -0.02 1.62 16 Total: -1.00 -69.30 321.51 1.35 -67.95 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.21 Total: 28.47 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 4.56 Total: -2.73 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -3.67 Total: -131.52 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.05 Total: -20.03 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 16 Polarization: 10.62 SS G_CDS: -1.30 Total: 9.32 kcal Total: -69.30 1.35 -67.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698644635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.827 kcal (2) G-P(sol) polarization free energy of solvation -69.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds