Wall clock time and date at job start Tue Mar 31 2020 06:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47221 * 2 1 4 4 N 1.31242 * 124.06076 * 270.17369 * 3 2 1 5 5 N 1.27331 * 120.04155 * 180.33946 * 4 3 2 6 6 S 1.56638 * 109.74175 * 359.71724 * 5 4 3 7 7 C 1.38251 * 124.05431 * 90.00496 * 3 2 1 8 8 C 1.47174 * 128.47475 * 359.97438 * 7 3 2 9 9 O 1.21616 * 119.99853 * 359.70543 * 8 7 3 10 10 N 1.34773 * 119.99757 * 179.70635 * 8 7 3 11 11 C 1.46501 * 119.99885 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47078 * 179.97438 * 11 10 8 13 13 C 1.31002 * 119.99445 * 127.15936 * 12 11 10 14 14 C 1.50697 * 120.00248 * 7.55720 * 13 12 11 15 15 N 1.46504 * 109.47268 * 127.00837 * 14 13 12 16 16 C 1.36929 * 120.00158 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99835 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99941 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00073 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.47085 * 89.99834 * 20 18 16 22 22 H 1.48503 * 109.47330 * 209.99624 * 20 18 16 23 23 H 1.48497 * 109.47457 * 330.00213 * 20 18 16 24 24 H 1.09001 * 109.47147 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46760 * 299.99459 * 1 2 3 26 26 H 1.08997 * 109.47154 * 59.99840 * 1 2 3 27 27 H 1.09011 * 109.47089 * 239.99993 * 2 1 3 28 28 H 1.09007 * 109.47159 * 120.00301 * 2 1 3 29 29 H 0.97001 * 120.00347 * 359.97438 * 10 8 7 30 30 H 1.09000 * 109.47174 * 59.99664 * 11 10 8 31 31 H 1.08999 * 109.47144 * 299.99911 * 11 10 8 32 32 H 1.07993 * 120.00251 * 306.88320 * 12 11 10 33 33 H 1.08005 * 119.99569 * 187.56190 * 13 12 11 34 34 H 1.09005 * 109.47101 * 247.00503 * 14 13 12 35 35 H 1.08999 * 109.47224 * 7.00545 * 14 13 12 36 36 H 0.97003 * 119.99596 * 0.02562 * 15 14 13 37 37 H 0.97000 * 120.00302 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2743 2.1148 -1.0873 5 7 2.7041 3.3101 -0.9980 6 16 2.8497 3.7088 0.5097 7 6 2.2905 2.1506 1.1454 8 6 2.1428 1.7342 2.5493 9 8 1.7415 0.6168 2.8131 10 7 2.4523 2.5910 3.5424 11 6 2.3059 2.1763 4.9399 12 6 2.7150 3.3092 5.8455 13 6 1.9035 3.7196 6.7885 14 6 0.6385 2.9542 7.0798 15 7 0.5797 2.6337 8.5082 16 6 -0.4871 1.9372 9.0102 17 1 -1.2853 1.6245 8.3533 18 6 -0.5426 1.6331 10.3635 19 7 -1.5677 0.9632 10.8460 20 14 0.8376 2.1746 11.4998 21 1 0.5310 3.5219 12.0439 22 1 0.9663 1.2065 12.6186 23 1 2.1127 2.2259 10.7405 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 2.7728 3.4821 3.3320 30 1 2.9412 1.3115 5.1307 31 1 1.2661 1.9131 5.1337 32 1 3.6789 3.7797 5.7201 33 1 2.1411 4.6066 7.3571 34 1 -0.2246 3.5618 6.8080 35 1 0.6304 2.0314 6.4998 36 1 1.2960 2.9155 9.0984 37 1 -1.6063 0.7504 11.7915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699282921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:35 Heat of formation + Delta-G solvation = 70.470540 kcal Electronic energy + Delta-G solvation = -20418.209642 eV Core-core repulsion = 17131.440078 eV Total energy + Delta-G solvation = -3286.769564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.37996 -39.77744 -36.86771 -34.93189 -34.56871 -33.06413 -31.15436 -30.65083 -28.27500 -26.72715 -25.22191 -24.11918 -22.44464 -22.12658 -20.72033 -19.19559 -18.80205 -17.90412 -16.94993 -16.56375 -16.27762 -15.74886 -15.07577 -14.79466 -14.54193 -14.42960 -14.10667 -13.86752 -13.31566 -13.21283 -12.85943 -12.82611 -12.65899 -12.44191 -12.07882 -11.73007 -11.30129 -11.23056 -10.90578 -10.71862 -10.62486 -10.36930 -10.22838 -10.17961 -10.11351 -9.64453 -9.47894 -9.19994 -8.77272 -7.27966 -5.80708 -3.17496 -0.65145 0.41143 1.07574 1.57773 1.96988 2.67401 2.91358 3.34518 3.36789 3.42725 3.49764 4.16882 4.36898 4.55371 4.76344 4.82388 5.02810 5.05311 5.07326 5.43073 5.47803 5.48759 5.55587 5.65419 5.68492 5.84401 5.93055 5.96957 6.04448 6.31912 6.37217 6.65748 6.90322 7.05775 7.28764 7.75866 7.94266 8.37646 9.15761 9.87596 10.06643 11.37395 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.002807 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.964024 B = 9971.017510 C =10726.209957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C 0.105 3.895 4 N -0.247 5.247 5 N -0.253 5.253 6 S 0.410 5.590 7 C -0.287 4.287 8 C 0.598 3.402 9 O -0.506 6.506 10 N -0.714 5.714 11 C 0.140 3.860 12 C -0.198 4.198 13 C -0.113 4.113 14 C 0.165 3.835 15 N -0.751 5.751 16 C -0.248 4.248 17 H 0.091 0.909 18 C 0.006 3.994 19 N -0.932 5.932 20 Si 0.886 3.114 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.398 0.602 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.038 0.962 35 H 0.043 0.957 36 H 0.362 0.638 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.600 5.742 -22.263 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.042 4.042 4 N -0.113 5.113 5 N -0.233 5.233 6 S 0.546 5.454 7 C -0.428 4.428 8 C 0.381 3.619 9 O -0.381 6.381 10 N -0.365 5.365 11 C 0.018 3.982 12 C -0.218 4.218 13 C -0.132 4.132 14 C 0.039 3.961 15 N -0.396 5.396 16 C -0.378 4.378 17 H 0.109 0.891 18 C -0.190 4.190 19 N -0.579 5.579 20 Si 0.716 3.284 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.203 1.203 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.232 0.768 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.195 0.805 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.626 6.336 -23.168 26.684 hybrid contribution 0.780 -0.227 1.444 1.656 sum 12.406 6.109 -21.724 25.752 Atomic orbital electron populations 1.21676 0.93104 1.02974 1.02280 1.20342 0.97153 0.86234 1.05131 1.23024 0.96426 0.99772 0.84969 1.70613 1.13759 0.98966 1.27981 1.78911 1.18286 1.10671 1.15463 1.82523 1.46415 1.14656 1.01805 1.27817 1.14789 1.00053 1.00093 1.16419 0.78532 0.85129 0.81840 1.90862 1.45002 1.19444 1.82818 1.45903 1.67396 1.16659 1.06567 1.20690 1.03817 0.96472 0.77182 1.22604 0.99565 0.99865 0.99732 1.23357 0.95994 0.97671 0.96186 1.19989 0.92822 0.96261 0.87058 1.42607 1.25124 1.68713 1.03194 1.19057 0.98248 1.27419 0.93061 0.89092 1.24682 0.97558 1.00128 0.96658 1.69701 1.30433 1.44273 1.13534 0.86529 0.82535 0.78232 0.81111 1.21032 1.21636 1.20275 0.91054 0.91985 0.92593 0.89423 0.87425 0.76800 0.90311 0.88574 0.86740 0.86719 0.94449 0.93905 0.80518 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.05 -0.44 5.94 -27.89 -0.17 -0.61 16 3 C 0.11 1.10 6.25 -82.84 -0.52 0.59 16 4 N -0.25 -2.80 11.54 33.42 0.39 -2.41 16 5 N -0.25 -2.65 12.51 60.35 0.75 -1.89 16 6 S 0.41 3.07 23.05 -107.50 -2.48 0.59 16 7 C -0.29 -2.83 6.81 -35.95 -0.24 -3.08 16 8 C 0.60 6.82 7.80 -12.63 -0.10 6.72 16 9 O -0.51 -7.34 14.90 5.26 0.08 -7.26 16 10 N -0.71 -6.91 5.54 -62.65 -0.35 -7.26 16 11 C 0.14 1.65 5.76 -5.19 -0.03 1.62 16 12 C -0.20 -2.19 9.63 -36.03 -0.35 -2.54 16 13 C -0.11 -1.54 9.63 -36.03 -0.35 -1.88 16 14 C 0.16 3.01 6.35 -5.19 -0.03 2.98 16 15 N -0.75 -17.47 5.40 -61.08 -0.33 -17.80 16 16 C -0.25 -6.98 10.47 -15.06 -0.16 -7.14 16 17 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 19 N -0.93 -29.15 13.97 55.49 0.78 -28.38 16 20 Si 0.89 21.78 27.73 -169.99 -4.71 17.06 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.36 6.52 56.52 0.37 -6.00 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.68 8.14 -51.92 -0.42 0.25 16 28 H 0.11 1.09 6.48 -51.93 -0.34 0.75 16 29 H 0.40 2.72 7.89 -40.82 -0.32 2.39 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 1.35 5.30 -51.93 -0.28 1.07 16 32 H 0.11 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.80 5.29 -51.93 -0.27 0.52 16 36 H 0.36 8.16 5.52 -40.82 -0.23 7.94 16 37 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -33.46 331.22 -6.96 -40.42 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.41 Total: 6.11 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.67 Total: -4.17 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 1.24 Total: -57.74 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.08 Total: -7.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -2.48 Total: 0.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.46 -6.96 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699282921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.888 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds