Wall clock time and date at job start Tue Mar 31 2020 06:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47221 * 2 1 4 4 N 1.31242 * 124.06076 * 270.17369 * 3 2 1 5 5 N 1.27331 * 120.04155 * 180.33946 * 4 3 2 6 6 S 1.56638 * 109.74175 * 359.71724 * 5 4 3 7 7 C 1.38251 * 124.05431 * 90.00496 * 3 2 1 8 8 C 1.47174 * 128.47475 * 359.97438 * 7 3 2 9 9 O 1.21616 * 119.99853 * 359.70543 * 8 7 3 10 10 N 1.34773 * 119.99757 * 179.70635 * 8 7 3 11 11 C 1.46501 * 119.99885 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47078 * 179.97438 * 11 10 8 13 13 C 1.31002 * 119.99445 * 127.15936 * 12 11 10 14 14 C 1.50697 * 120.00248 * 7.55720 * 13 12 11 15 15 N 1.46504 * 109.47268 * 127.00837 * 14 13 12 16 16 C 1.36929 * 120.00158 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99835 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99941 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00073 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.47085 * 89.99834 * 20 18 16 22 22 H 1.48503 * 109.47330 * 209.99624 * 20 18 16 23 23 H 1.48497 * 109.47457 * 330.00213 * 20 18 16 24 24 H 1.09001 * 109.47147 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46760 * 299.99459 * 1 2 3 26 26 H 1.08997 * 109.47154 * 59.99840 * 1 2 3 27 27 H 1.09011 * 109.47089 * 239.99993 * 2 1 3 28 28 H 1.09007 * 109.47159 * 120.00301 * 2 1 3 29 29 H 0.97001 * 120.00347 * 359.97438 * 10 8 7 30 30 H 1.09000 * 109.47174 * 59.99664 * 11 10 8 31 31 H 1.08999 * 109.47144 * 299.99911 * 11 10 8 32 32 H 1.07993 * 120.00251 * 306.88320 * 12 11 10 33 33 H 1.08005 * 119.99569 * 187.56190 * 13 12 11 34 34 H 1.09005 * 109.47101 * 247.00503 * 14 13 12 35 35 H 1.08999 * 109.47224 * 7.00545 * 14 13 12 36 36 H 0.97003 * 119.99596 * 0.02562 * 15 14 13 37 37 H 0.97000 * 120.00302 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2743 2.1148 -1.0873 5 7 2.7041 3.3101 -0.9980 6 16 2.8497 3.7088 0.5097 7 6 2.2905 2.1506 1.1454 8 6 2.1428 1.7342 2.5493 9 8 1.7415 0.6168 2.8131 10 7 2.4523 2.5910 3.5424 11 6 2.3059 2.1763 4.9399 12 6 2.7150 3.3092 5.8455 13 6 1.9035 3.7196 6.7885 14 6 0.6385 2.9542 7.0798 15 7 0.5797 2.6337 8.5082 16 6 -0.4871 1.9372 9.0102 17 1 -1.2853 1.6245 8.3533 18 6 -0.5426 1.6331 10.3635 19 7 -1.5677 0.9632 10.8460 20 14 0.8376 2.1746 11.4998 21 1 0.5310 3.5219 12.0439 22 1 0.9663 1.2065 12.6186 23 1 2.1127 2.2259 10.7405 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 2.7728 3.4821 3.3320 30 1 2.9412 1.3115 5.1307 31 1 1.2661 1.9131 5.1337 32 1 3.6789 3.7797 5.7201 33 1 2.1411 4.6066 7.3571 34 1 -0.2246 3.5618 6.8080 35 1 0.6304 2.0314 6.4998 36 1 1.2960 2.9155 9.0984 37 1 -1.6063 0.7504 11.7915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699282921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:34 Heat of formation + Delta-G solvation = 45.308341 kcal Electronic energy + Delta-G solvation = -20419.300756 eV Core-core repulsion = 17131.440078 eV Total energy + Delta-G solvation = -3287.860678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.15570 -40.69813 -38.09263 -36.29069 -35.39164 -34.53449 -32.89684 -31.60113 -29.19750 -27.98360 -26.50162 -24.90128 -24.02568 -23.26330 -21.61009 -20.51365 -19.53466 -19.40774 -18.12884 -17.56286 -17.12990 -16.80316 -16.39496 -16.00698 -15.64530 -15.42578 -15.17047 -15.11784 -14.82683 -14.31054 -14.17357 -14.06964 -13.58178 -13.49983 -13.19472 -13.03228 -12.73048 -12.44408 -12.19283 -11.97204 -11.86587 -11.65348 -11.53964 -11.20788 -11.04770 -10.98945 -10.84611 -10.44326 -10.01359 -9.25985 -8.03607 -5.38441 -1.41198 -0.30281 0.36065 0.78066 0.98388 1.38905 1.43607 1.51294 1.79789 2.02870 2.49012 2.74433 3.27760 3.40751 3.60527 3.77581 3.85896 4.05051 4.12393 4.30190 4.32209 4.33009 4.58862 4.76927 4.83824 4.91650 4.97305 5.01676 5.11464 5.20147 5.29523 5.57107 5.71847 5.85923 6.20037 6.25344 6.53722 6.92594 7.06876 7.81254 8.02098 9.17927 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.002807 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.964024 B = 9971.017510 C =10726.209957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.048 4.048 3 C 0.100 3.900 4 N -0.271 5.271 5 N -0.283 5.283 6 S 0.511 5.489 7 C -0.310 4.310 8 C 0.599 3.401 9 O -0.544 6.544 10 N -0.699 5.699 11 C 0.138 3.862 12 C -0.157 4.157 13 C -0.135 4.135 14 C 0.160 3.840 15 N -0.753 5.753 16 C -0.241 4.241 17 H 0.053 0.947 18 C -0.066 4.066 19 N -0.985 5.985 20 Si 0.962 3.038 21 H -0.275 1.275 22 H -0.297 1.297 23 H -0.247 1.247 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.415 0.585 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.135 0.865 34 H 0.029 0.971 35 H 0.037 0.963 36 H 0.369 0.631 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.649 7.938 -22.843 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 C -0.049 4.049 4 N -0.135 5.135 5 N -0.264 5.264 6 S 0.647 5.353 7 C -0.451 4.451 8 C 0.383 3.617 9 O -0.422 6.422 10 N -0.352 5.352 11 C 0.015 3.985 12 C -0.176 4.176 13 C -0.154 4.154 14 C 0.035 3.965 15 N -0.400 5.400 16 C -0.372 4.372 17 H 0.071 0.929 18 C -0.258 4.258 19 N -0.635 5.635 20 Si 0.788 3.212 21 H -0.201 1.201 22 H -0.223 1.223 23 H -0.171 1.171 24 H 0.101 0.899 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.252 0.748 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.175 0.825 33 H 0.153 0.847 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.203 0.797 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.716 8.594 -23.814 29.284 hybrid contribution -0.196 -0.868 1.486 1.732 sum 14.520 7.726 -22.328 27.732 Atomic orbital electron populations 1.21637 0.93049 1.03496 1.01423 1.20342 0.97170 0.86109 1.05239 1.23182 0.96326 1.00209 0.85160 1.70678 1.14994 0.99370 1.28459 1.78635 1.19025 1.10767 1.17990 1.82082 1.42979 1.11310 0.98923 1.27713 1.16078 1.02105 0.99171 1.16586 0.77811 0.84716 0.82568 1.90847 1.46664 1.21144 1.83514 1.45669 1.66836 1.17227 1.05431 1.20554 1.02233 0.97172 0.78521 1.22835 1.00002 0.97658 0.97138 1.23086 0.94557 0.98951 0.98808 1.20096 0.95586 0.96679 0.84185 1.42600 1.23819 1.68046 1.05489 1.19037 0.98608 1.26773 0.92791 0.92926 1.25608 1.00711 1.00834 0.98598 1.69901 1.33221 1.46539 1.13852 0.85313 0.79985 0.77593 0.78305 1.20080 1.22341 1.17118 0.89918 0.93896 0.92211 0.87979 0.88544 0.74788 0.90593 0.91299 0.82489 0.84691 0.95338 0.94499 0.79745 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.89 71.98 0.71 -1.79 16 2 C -0.05 -0.89 5.94 29.85 0.18 -0.71 16 3 C 0.10 2.03 6.25 42.65 0.27 2.29 16 4 N -0.27 -5.86 11.54 -48.18 -0.56 -6.41 16 5 N -0.28 -5.43 12.51 37.02 0.46 -4.96 16 6 S 0.51 6.23 23.05 -56.49 -1.30 4.93 16 7 C -0.31 -5.70 6.81 24.62 0.17 -5.54 16 8 C 0.60 13.10 7.80 86.59 0.68 13.78 16 9 O -0.54 -16.01 14.90 -4.08 -0.06 -16.07 16 10 N -0.70 -11.95 5.54 -470.37 -2.61 -14.56 16 11 C 0.14 3.00 5.76 85.63 0.49 3.49 16 12 C -0.16 -2.85 9.63 25.64 0.25 -2.61 16 13 C -0.13 -3.27 9.63 25.64 0.25 -3.02 16 14 C 0.16 5.76 6.35 85.63 0.54 6.31 16 15 N -0.75 -34.60 5.40 -347.17 -1.87 -36.48 16 16 C -0.24 -13.89 10.47 84.04 0.88 -13.01 16 17 H 0.05 3.35 8.06 -2.91 -0.02 3.32 16 18 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 19 N -0.98 -63.58 13.97 21.65 0.30 -63.28 16 20 Si 0.96 44.71 27.73 68.60 1.90 46.61 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.25 -10.15 6.52 99.48 0.65 -9.50 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.10 2.02 6.48 -2.38 -0.02 2.00 16 29 H 0.41 4.11 7.89 -92.71 -0.73 3.38 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.93 5.30 -2.39 -0.01 1.92 16 32 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 34 H 0.03 1.07 8.14 -2.38 -0.02 1.06 16 35 H 0.04 1.40 5.29 -2.39 -0.01 1.38 16 36 H 0.37 15.78 5.52 -92.71 -0.51 15.27 16 37 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -75.65 331.22 0.96 -74.69 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.18 Total: 19.79 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 4.88 Total: -4.25 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -4.27 Total: -125.69 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.06 Total: -16.07 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.90 Total: 46.61 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.30 Total: 4.93 kcal Total: -75.65 0.96 -74.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699282921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.996 kcal (2) G-P(sol) polarization free energy of solvation -75.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds