Wall clock time and date at job start Tue Mar 31 2020 06:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47373 * 2 1 4 4 N 1.31247 * 124.05266 * 270.17462 * 3 2 1 5 5 N 1.27338 * 120.03054 * 180.33799 * 4 3 2 6 6 S 1.56627 * 109.74375 * 359.71342 * 5 4 3 7 7 C 1.38240 * 124.05851 * 89.99941 * 3 2 1 8 8 C 1.47174 * 128.47500 * 0.02562 * 7 3 2 9 9 O 1.21629 * 119.99706 * 359.69971 * 8 7 3 10 10 N 1.34774 * 120.00454 * 179.69927 * 8 7 3 11 11 C 1.46502 * 120.00215 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.46804 * 180.02562 * 11 10 8 13 13 C 1.30994 * 119.99826 * 125.27541 * 12 11 10 14 14 C 1.50702 * 120.00204 * 179.71900 * 13 12 11 15 15 N 1.46500 * 109.46883 * 124.99760 * 14 13 12 16 16 C 1.36943 * 119.99537 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99930 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00004 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99955 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00300 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47290 * 59.99825 * 20 18 16 22 22 H 1.48505 * 109.47159 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46925 * 299.99739 * 20 18 16 24 24 H 1.08999 * 109.47097 * 59.99707 * 1 2 3 25 25 H 1.08999 * 109.47337 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46904 * 299.99906 * 1 2 3 27 27 H 1.09000 * 109.46904 * 240.00094 * 2 1 3 28 28 H 1.08999 * 109.47097 * 120.00293 * 2 1 3 29 29 H 0.96997 * 119.99865 * 0.02562 * 10 8 7 30 30 H 1.08998 * 109.47066 * 59.99906 * 11 10 8 31 31 H 1.09001 * 109.47002 * 300.00046 * 11 10 8 32 32 H 1.08002 * 119.99761 * 304.99301 * 12 11 10 33 33 H 1.08002 * 120.00350 * 359.72370 * 13 12 11 34 34 H 1.08998 * 109.47600 * 245.00508 * 14 13 12 35 35 H 1.09004 * 109.46937 * 5.00335 * 14 13 12 36 36 H 0.96999 * 120.00357 * 0.02562 * 15 14 13 37 37 H 0.96995 * 120.00545 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2743 2.1148 -1.0874 5 7 2.7041 3.3101 -0.9981 6 16 2.8497 3.7088 0.5095 7 6 2.2905 2.1507 1.1453 8 6 2.1437 1.7341 2.5492 9 8 1.7431 0.6163 2.8130 10 7 2.4531 2.5909 3.5424 11 6 2.3075 2.1760 4.9398 12 6 2.7151 3.3094 5.8454 13 6 1.8886 3.7432 6.7645 14 6 2.2986 4.8724 7.6743 15 7 1.3041 5.9455 7.5993 16 6 1.4665 7.0827 8.3448 17 1 2.3279 7.1886 8.9876 18 6 0.5239 8.0993 8.2743 19 7 -0.5256 7.9705 7.4905 20 14 0.7457 9.6509 9.2905 21 1 2.0183 10.3145 8.9095 22 1 -0.3896 10.5743 9.0383 23 1 0.7843 9.2969 10.7322 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.7722 3.4824 3.3319 30 1 2.9434 1.3115 5.1302 31 1 1.2679 1.9121 5.1340 32 1 3.6905 3.7611 5.7396 33 1 0.9133 3.2914 6.8703 34 1 2.3634 4.5079 8.6995 35 1 3.2705 5.2554 7.3628 36 1 0.5306 5.8505 7.0217 37 1 -1.1845 8.6806 7.4414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699282922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:38 Heat of formation + Delta-G solvation = 57.169498 kcal Electronic energy + Delta-G solvation = -20139.378030 eV Core-core repulsion = 16852.031690 eV Total energy + Delta-G solvation = -3287.346340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.32965 -39.74991 -36.46556 -34.96997 -34.57298 -33.02448 -31.14154 -30.42687 -28.26658 -26.93515 -24.60710 -23.95953 -22.54952 -21.82143 -20.78626 -19.55785 -18.76255 -17.77844 -17.16309 -16.37816 -16.14631 -15.36889 -15.09455 -14.82818 -14.53424 -14.43002 -13.93678 -13.74236 -13.31793 -13.28135 -12.93514 -12.81279 -12.41226 -12.14370 -11.95062 -11.73653 -11.24082 -11.09770 -10.85037 -10.74126 -10.65950 -10.35614 -10.17227 -10.15614 -10.07780 -9.86337 -9.49085 -9.10678 -8.81991 -7.01125 -5.83171 -3.13232 -0.59494 0.48357 1.14648 1.61643 2.09415 2.66892 2.97244 3.40069 3.44618 3.45696 3.54149 4.20071 4.39612 4.54498 4.79091 4.85348 5.00935 5.03665 5.12767 5.44839 5.48217 5.50097 5.64133 5.65639 5.81729 5.88327 5.95652 6.03656 6.07171 6.38302 6.48882 6.78155 7.03659 7.07327 7.33783 7.62685 7.74109 8.35021 9.46384 10.01781 10.36895 11.39379 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.002678 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.758860 B =10451.753720 C =11086.216482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 C 0.104 3.896 4 N -0.250 5.250 5 N -0.254 5.254 6 S 0.425 5.575 7 C -0.293 4.293 8 C 0.601 3.399 9 O -0.515 6.515 10 N -0.713 5.713 11 C 0.157 3.843 12 C -0.207 4.207 13 C -0.100 4.100 14 C 0.171 3.829 15 N -0.730 5.730 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.403 0.597 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.032 0.968 35 H 0.026 0.974 36 H 0.385 0.615 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.989 -14.958 -14.142 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.043 4.043 4 N -0.115 5.115 5 N -0.234 5.234 6 S 0.562 5.438 7 C -0.434 4.434 8 C 0.385 3.615 9 O -0.392 6.392 10 N -0.365 5.365 11 C 0.035 3.965 12 C -0.227 4.227 13 C -0.120 4.120 14 C 0.044 3.956 15 N -0.374 5.374 16 C -0.375 4.375 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.124 0.876 29 H 0.237 0.763 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.219 0.781 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.314 -14.078 -14.948 21.797 hybrid contribution -0.437 0.261 0.824 0.968 sum 6.877 -13.817 -14.124 20.921 Atomic orbital electron populations 1.21673 0.93236 1.02772 1.02335 1.20310 0.97042 0.86367 1.04998 1.22993 0.96598 0.99718 0.85030 1.70628 1.13938 0.99021 1.27949 1.78880 1.18186 1.10590 1.15761 1.82719 1.45636 1.14094 1.01393 1.27788 1.15246 1.00325 1.00035 1.16424 0.78194 0.84996 0.81925 1.90817 1.45731 1.19601 1.83033 1.45963 1.67133 1.16897 1.06490 1.20423 1.02006 0.96372 0.77686 1.22664 1.01052 1.00093 0.98873 1.23374 0.98214 0.95244 0.95124 1.19841 0.93270 0.86917 0.95531 1.42284 1.25702 1.15928 1.53498 1.19192 1.05841 0.93868 1.18645 0.91101 1.24765 0.97135 0.98808 1.00122 1.69650 1.12677 1.34095 1.41651 0.86237 0.76966 0.82963 0.79820 1.21185 1.21617 1.21176 0.92517 0.91198 0.92079 0.89467 0.87564 0.76264 0.90449 0.90590 0.86545 0.87142 0.95038 0.95592 0.78129 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.90 37.16 0.37 -0.85 16 2 C -0.05 -0.42 5.95 -27.88 -0.17 -0.58 16 3 C 0.10 1.13 6.25 -82.84 -0.52 0.61 16 4 N -0.25 -2.99 11.54 33.42 0.39 -2.60 16 5 N -0.25 -2.93 12.51 60.35 0.75 -2.17 16 6 S 0.42 3.82 23.05 -107.50 -2.48 1.34 16 7 C -0.29 -3.08 6.80 -35.95 -0.24 -3.32 16 8 C 0.60 6.88 7.80 -12.63 -0.10 6.78 16 9 O -0.52 -7.00 14.90 5.25 0.08 -6.92 16 10 N -0.71 -7.34 5.54 -62.64 -0.35 -7.68 16 11 C 0.16 1.70 6.11 -5.19 -0.03 1.67 16 12 C -0.21 -2.49 9.24 -36.02 -0.33 -2.83 16 13 C -0.10 -1.49 9.24 -36.02 -0.33 -1.82 16 14 C 0.17 3.25 6.70 -5.19 -0.03 3.21 16 15 N -0.73 -17.97 5.59 -61.08 -0.34 -18.31 16 16 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 17 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 20 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.11 1.02 6.47 -51.93 -0.34 0.68 16 29 H 0.40 3.52 7.89 -40.82 -0.32 3.20 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.88 7.79 -51.93 -0.40 0.47 16 32 H 0.12 1.31 7.84 -52.49 -0.41 0.90 16 33 H 0.11 1.60 7.84 -52.49 -0.41 1.19 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.03 0.49 7.79 -51.93 -0.40 0.08 16 36 H 0.39 9.98 7.66 -40.82 -0.31 9.66 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -31.86 338.82 -7.46 -39.33 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -4.69 Total: 6.40 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.64 Total: -4.42 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 1.18 Total: -57.77 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: 0.08 Total: -6.92 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.48 Total: 1.34 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.86 -7.46 -39.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699282922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.498 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds