Wall clock time and date at job start Tue Mar 31 2020 07:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86791 * 120.00211 * 2 1 4 4 H 1.48505 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47239 * 300.00013 * 3 2 1 6 6 H 1.48502 * 109.47444 * 59.99971 * 3 2 1 7 7 C 1.37877 * 119.99488 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99570 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00494 * 359.97438 * 7 2 1 10 10 C 1.53035 * 109.46201 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.31287 * 181.38764 * 10 9 7 12 12 N 1.46932 * 108.77233 * 305.36095 * 11 10 9 13 13 C 1.34772 * 120.63090 * 233.58037 * 12 11 10 14 14 O 1.21286 * 119.99921 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00066 * 180.02562 * 13 12 11 16 16 H 1.09002 * 110.86024 * 55.70504 * 15 13 12 17 17 C 1.54734 * 110.97219 * 291.90485 * 15 13 12 18 18 C 1.51695 * 102.54970 * 217.62906 * 17 15 13 19 19 C 1.47467 * 125.86691 * 195.39221 * 18 17 15 20 20 O 1.21476 * 120.00210 * 359.97438 * 19 18 17 21 21 O 1.34756 * 120.00117 * 180.02562 * 19 18 17 22 22 N 1.29058 * 108.26563 * 15.39251 * 18 17 15 23 23 O 1.41388 * 112.88284 * 0.31690 * 22 18 17 24 24 C 1.46926 * 118.73575 * 53.86694 * 12 11 10 25 25 C 1.53048 * 109.45930 * 300.07290 * 9 7 2 26 26 H 0.97001 * 119.99400 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.44899 * 60.03469 * 9 7 2 28 28 H 1.09001 * 109.50123 * 61.43570 * 10 9 7 29 29 H 1.08999 * 109.49449 * 301.33543 * 10 9 7 30 30 H 1.08996 * 109.58565 * 185.57616 * 11 10 9 31 31 H 1.08998 * 109.58939 * 65.14888 * 11 10 9 32 32 H 1.08997 * 110.79589 * 335.89224 * 17 15 13 33 33 H 1.09004 * 110.79343 * 99.37118 * 17 15 13 34 34 H 0.96699 * 117.00335 * 179.97438 * 21 19 18 35 35 H 1.08999 * 109.58909 * 65.92149 * 24 12 11 36 36 H 1.09000 * 109.58536 * 186.35154 * 24 12 11 37 37 H 1.09002 * 109.49444 * 298.56636 * 25 9 7 38 38 H 1.09002 * 109.49720 * 58.65869 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4766 -4.9867 -0.0355 12 7 0.5222 -5.0089 1.0814 13 6 0.5112 -6.0352 1.9549 14 8 1.2943 -6.9519 1.8233 15 6 -0.4743 -6.0437 3.0950 16 1 -1.4955 -5.9489 2.7261 17 6 -0.1487 -4.9283 4.1168 18 6 -0.4634 -5.5940 5.4430 19 6 -0.6401 -4.9054 6.7350 20 8 -0.5342 -3.6969 6.7987 21 8 -0.9181 -5.6168 7.8452 22 7 -0.5500 -6.8665 5.2463 23 8 -0.3241 -7.2313 3.8991 24 6 -0.4242 -3.8941 1.2242 25 6 0.3703 -2.5795 1.2486 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5566 -0.8907 28 1 2.8555 -3.6194 0.9019 29 1 2.8882 -3.5914 -0.8782 30 1 2.1750 -5.8175 0.0640 31 1 0.9371 -5.0711 -0.9789 32 1 0.9038 -4.6500 4.0637 33 1 -0.7882 -4.0598 3.9584 34 1 -1.0248 -5.1214 8.6688 35 1 -1.1154 -3.8913 0.3814 36 1 -0.9802 -4.0038 2.1553 37 1 0.9982 -2.5469 2.1390 38 1 -0.3221 -1.7377 1.2602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:21 Heat of formation + Delta-G solvation = -94.457630 kcal Electronic energy + Delta-G solvation = -24350.096664 eV Core-core repulsion = 20581.129656 eV Total energy + Delta-G solvation = -3768.967008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29241 -40.31685 -39.14073 -36.93003 -36.61725 -33.79032 -33.49118 -32.15569 -30.77934 -29.96064 -26.58446 -25.70061 -24.72985 -22.91648 -22.41362 -20.89469 -20.21525 -18.74936 -18.46068 -17.89540 -17.28228 -16.49483 -16.24611 -16.13998 -15.71702 -15.34556 -14.61565 -14.49727 -14.17958 -13.68153 -13.51564 -13.27273 -13.14635 -12.78130 -12.74158 -12.59277 -12.11554 -12.00658 -11.82289 -11.49621 -11.41408 -11.25328 -11.02084 -10.69965 -10.51247 -10.34011 -10.16544 -9.77519 -9.54079 -9.28932 -9.05383 -8.47750 -8.21833 -6.11731 -4.17675 0.33719 1.85261 2.27859 2.49356 2.61399 3.22773 3.29121 3.31954 3.35643 3.84043 4.04298 4.28921 4.34967 4.43309 4.64381 4.95519 5.15255 5.21588 5.28833 5.46057 5.64915 5.78348 5.85415 5.90740 6.01582 6.06955 6.27906 6.50698 6.54054 6.73780 6.89629 6.97372 7.12490 7.32032 7.54472 7.64437 7.80149 7.93232 8.22129 8.30495 8.85997 9.48397 10.93984 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.004516 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.468216 B = 6198.047278 C = 7564.557763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.591 5.591 13 C 0.517 3.483 14 O -0.530 6.530 15 C 0.027 3.973 16 H 0.122 0.878 17 C -0.121 4.121 18 C 0.057 3.943 19 C 0.564 3.436 20 O -0.477 6.477 21 O -0.496 6.496 22 N -0.206 5.206 23 O -0.145 6.145 24 C 0.094 3.906 25 C -0.124 4.124 26 H 0.261 0.739 27 H 0.029 0.971 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.423 0.577 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 -8.326 9.741 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.029 3.971 10 C -0.162 4.162 11 C -0.009 4.009 12 N -0.324 5.324 13 C 0.302 3.698 14 O -0.407 6.407 15 C -0.035 4.035 16 H 0.139 0.861 17 C -0.160 4.160 18 C -0.136 4.136 19 C 0.403 3.597 20 O -0.360 6.360 21 O -0.307 6.307 22 N 0.052 4.948 23 O -0.169 6.169 24 C -0.028 4.028 25 C -0.163 4.163 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.284 0.716 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.573 -9.677 9.742 14.472 hybrid contribution 0.364 2.148 0.090 2.181 sum -4.209 -7.528 9.831 13.078 Atomic orbital electron populations 1.69829 1.05853 1.26486 1.50911 1.24947 0.94873 0.99099 0.94945 0.86562 0.80211 0.83782 0.77619 1.19819 1.21024 1.21005 1.21225 0.93031 0.90461 1.50337 0.92588 1.18648 0.92640 0.91832 0.93943 1.22028 0.98945 0.93962 1.01266 1.21793 0.91575 1.00061 0.87431 1.48193 1.36036 1.20572 1.27647 1.19699 0.84331 0.82958 0.82850 1.90724 1.40267 1.35722 1.73962 1.23711 1.01502 0.85285 0.93005 0.86085 1.22929 1.07241 1.00326 0.85531 1.24702 1.00777 0.93390 0.94690 1.19101 0.73583 0.84310 0.82662 1.91029 1.45134 1.14073 1.85795 1.84629 1.82170 1.44590 1.19330 1.78583 1.03751 1.14202 0.98278 1.91432 1.89260 1.27154 1.09087 1.22365 0.91713 0.87816 1.00905 1.22138 1.00082 0.94199 0.99870 0.92955 0.95288 0.92838 0.91823 0.90078 0.91662 0.86125 0.85253 0.71647 0.91148 0.91666 0.93944 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.36 11.31 55.43 0.63 -22.73 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 3 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -12.99 8.56 -34.44 -0.29 -13.29 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.06 2.06 -91.73 -0.19 0.87 16 10 C -0.12 -2.35 5.30 -26.61 -0.14 -2.49 16 11 C 0.11 1.89 6.43 -3.71 -0.02 1.87 16 12 N -0.59 -9.53 2.97 -172.50 -0.51 -10.05 16 13 C 0.52 8.48 7.05 -10.99 -0.08 8.40 16 14 O -0.53 -10.52 16.00 -13.29 -0.21 -10.74 16 15 C 0.03 0.36 3.20 -26.97 -0.09 0.27 16 16 H 0.12 1.28 7.76 -51.93 -0.40 0.88 16 17 C -0.12 -1.45 5.48 -26.48 -0.15 -1.59 16 18 C 0.06 0.68 7.30 -79.51 -0.58 0.10 16 19 C 0.56 5.95 8.34 34.49 0.29 6.24 16 20 O -0.48 -6.07 17.74 -19.25 -0.34 -6.42 16 21 O -0.50 -3.81 13.43 -40.65 -0.55 -4.35 16 22 N -0.21 -2.81 12.51 35.26 0.44 -2.37 16 23 O -0.15 -2.24 11.82 -30.21 -0.36 -2.59 16 24 C 0.09 1.45 6.08 -3.48 -0.02 1.43 16 25 C -0.12 -2.47 5.17 -26.38 -0.14 -2.61 16 26 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.37 7.00 -51.93 -0.36 1.01 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.12 1.54 7.90 -51.93 -0.41 1.13 16 33 H 0.13 1.33 6.81 -51.93 -0.35 0.98 16 34 H 0.42 0.97 9.11 45.56 0.42 1.39 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.81 4.24 -51.93 -0.22 0.59 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.11 2.41 6.03 -51.93 -0.31 2.10 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -31.44 320.66 -6.32 -37.76 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -3.73 Total: 0.74 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.50 Total: 0.71 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.56 Total: -35.15 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -1.46 Total: -24.10 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.44 -6.32 -37.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.702 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds