Wall clock time and date at job start Tue Mar 31 2020 07:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48504 * 109.46859 * 240.00095 * 3 2 1 5 5 H 1.48498 * 109.46930 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46932 * 120.00165 * 3 2 1 7 7 C 1.37879 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.53035 * 109.45716 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.30995 * 181.38751 * 10 9 7 12 12 N 1.46929 * 108.77486 * 305.36045 * 11 10 9 13 13 C 1.34766 * 120.63348 * 233.63046 * 12 11 10 14 14 O 1.21286 * 120.00250 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00319 * 180.02562 * 13 12 11 16 16 H 1.08995 * 110.86173 * 301.20327 * 15 13 12 17 17 C 1.54745 * 110.97082 * 65.00176 * 15 13 12 18 18 C 1.51685 * 102.54760 * 142.33569 * 17 15 13 19 19 C 1.47471 * 125.86364 * 164.61195 * 18 17 15 20 20 O 1.21476 * 119.99912 * 359.97438 * 19 18 17 21 21 O 1.34759 * 120.00010 * 179.97438 * 19 18 17 22 22 N 1.29056 * 108.27423 * 344.60491 * 18 17 15 23 23 O 1.41398 * 112.87812 * 359.68576 * 22 18 17 24 24 C 1.46924 * 118.73409 * 53.61317 * 12 11 10 25 25 C 1.53042 * 109.46026 * 300.07396 * 9 7 2 26 26 H 0.96999 * 120.00327 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.44642 * 60.03543 * 9 7 2 28 28 H 1.09001 * 109.49969 * 61.43780 * 10 9 7 29 29 H 1.08996 * 109.52938 * 301.35121 * 10 9 7 30 30 H 1.08998 * 109.58804 * 65.15483 * 11 10 9 31 31 H 1.09003 * 109.58394 * 185.58059 * 11 10 9 32 32 H 1.09004 * 110.79082 * 260.60004 * 17 15 13 33 33 H 1.09000 * 110.79259 * 24.06600 * 17 15 13 34 34 H 0.96704 * 117.00060 * 180.02562 * 21 19 18 35 35 H 1.08999 * 109.58511 * 186.60055 * 24 12 11 36 36 H 1.09005 * 109.70744 * 66.24599 * 24 12 11 37 37 H 1.09006 * 109.49541 * 298.56536 * 25 9 7 38 38 H 1.09001 * 109.49602 * 58.65893 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4767 -4.9866 -0.0355 12 7 0.5223 -5.0089 1.0814 13 6 0.5119 -6.0347 1.9554 14 8 1.2957 -6.9510 1.8244 15 6 -0.4735 -6.0434 3.0955 16 1 -0.3463 -5.1628 3.7251 17 6 -1.9260 -6.1444 2.5714 18 6 -2.5847 -7.0464 3.5977 19 6 -4.0363 -7.2306 3.7810 20 8 -4.8191 -6.6292 3.0731 21 8 -4.4944 -8.0662 4.7339 22 7 -1.6566 -7.6251 4.2828 23 8 -0.3561 -7.2540 3.8701 24 6 -0.4203 -3.8914 1.2274 25 6 0.3703 -2.5795 1.2485 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5566 -0.8907 28 1 2.8556 -3.6193 0.9019 29 1 2.8887 -3.5916 -0.8778 30 1 0.9373 -5.0712 -0.9789 31 1 2.1752 -5.8175 0.0641 32 1 -2.4011 -5.1635 2.5566 33 1 -1.9495 -6.6018 1.5823 34 1 -5.4539 -8.1545 4.8161 35 1 -0.9736 -3.9996 2.1603 36 1 -1.1163 -3.8855 0.3885 37 1 0.9982 -2.5470 2.1390 38 1 -0.3221 -1.7378 1.2601 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480019.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:24 Heat of formation + Delta-G solvation = -94.893052 kcal Electronic energy + Delta-G solvation = -24123.590034 eV Core-core repulsion = 20354.604145 eV Total energy + Delta-G solvation = -3768.985889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33261 -40.36645 -39.16751 -36.93831 -36.68672 -33.82334 -33.51539 -32.17847 -30.74883 -30.02079 -26.58441 -25.75199 -24.80561 -22.86110 -22.46716 -20.89510 -20.21252 -18.79540 -18.62060 -17.88993 -17.24559 -16.47980 -16.27734 -16.15609 -15.86545 -15.38084 -14.64178 -14.47281 -14.17701 -13.71999 -13.57937 -13.21883 -13.14512 -12.98323 -12.66375 -12.49167 -12.24697 -12.07956 -11.86174 -11.54694 -11.44684 -11.27001 -10.98500 -10.74834 -10.51594 -10.36601 -10.17855 -9.77552 -9.54062 -9.29257 -9.06765 -8.47358 -8.22355 -6.11425 -4.17585 0.28221 1.80270 2.21556 2.47509 2.58624 3.25008 3.25549 3.30299 3.33349 3.79219 3.99958 4.24092 4.34700 4.40168 4.63542 4.91250 5.13106 5.19792 5.20540 5.40075 5.64706 5.77763 5.78581 5.89261 6.01604 6.09139 6.27663 6.49439 6.51902 6.73914 6.89993 6.97839 7.12399 7.25310 7.53913 7.64117 7.80412 7.92994 8.21581 8.30612 8.85533 9.48188 10.94181 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.021656 B = 0.003686 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.645889 B = 7595.422475 C = 8448.473219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.591 5.591 13 C 0.518 3.482 14 O -0.530 6.530 15 C 0.026 3.974 16 H 0.125 0.875 17 C -0.121 4.121 18 C 0.053 3.947 19 C 0.566 3.434 20 O -0.481 6.481 21 O -0.495 6.495 22 N -0.203 5.203 23 O -0.143 6.143 24 C 0.095 3.905 25 C -0.126 4.126 26 H 0.262 0.738 27 H 0.029 0.971 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.424 0.576 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.866 -11.148 6.177 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.009 4.009 12 N -0.324 5.324 13 C 0.302 3.698 14 O -0.406 6.406 15 C -0.036 4.036 16 H 0.142 0.858 17 C -0.160 4.160 18 C -0.139 4.139 19 C 0.406 3.594 20 O -0.365 6.365 21 O -0.306 6.306 22 N 0.054 4.946 23 O -0.168 6.168 24 C -0.026 4.026 25 C -0.164 4.164 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.146 0.854 33 H 0.136 0.864 34 H 0.284 0.716 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.062 -12.089 6.699 16.000 hybrid contribution -0.313 1.661 -0.504 1.764 sum -8.375 -10.428 6.196 14.740 Atomic orbital electron populations 1.69804 1.05846 1.26712 1.50737 1.24949 0.94883 0.99085 0.94945 0.86665 0.79645 0.83088 0.78669 1.20275 1.21277 1.20317 1.21156 0.92967 0.90501 1.50578 0.92689 1.18632 0.92625 0.91808 0.93897 1.22029 0.98959 0.93947 1.01299 1.21796 0.91590 1.00108 0.87378 1.48190 1.36193 1.20484 1.27563 1.19672 0.84516 0.82971 0.82621 1.90726 1.40377 1.35851 1.73693 1.23737 0.94373 0.91205 0.94264 0.85751 1.22933 0.91220 1.02212 0.99650 1.24678 0.92117 1.00137 0.97006 1.19101 0.86142 0.76501 0.77697 1.91008 1.56345 1.44984 1.44125 1.84639 1.32570 1.60448 1.52959 1.78589 0.90890 1.12129 1.12961 1.91450 1.16431 1.40466 1.68411 1.22262 0.91811 0.87787 1.00771 1.22065 1.00166 0.94303 0.99900 0.92838 0.95290 0.92784 0.91826 0.91661 0.90063 0.85354 0.86379 0.71625 0.91724 0.91066 0.94025 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.38 11.31 55.43 0.63 -22.75 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 3 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.51 -13.07 8.56 -34.44 -0.29 -13.37 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.08 2.06 -91.73 -0.19 0.89 16 10 C -0.12 -2.37 5.30 -26.61 -0.14 -2.51 16 11 C 0.11 1.89 6.43 -3.71 -0.02 1.87 16 12 N -0.59 -9.52 2.97 -172.76 -0.51 -10.03 16 13 C 0.52 8.47 7.07 -10.99 -0.08 8.39 16 14 O -0.53 -10.50 16.00 -13.30 -0.21 -10.72 16 15 C 0.03 0.35 3.22 -26.96 -0.09 0.26 16 16 H 0.13 1.42 7.66 -51.93 -0.40 1.03 16 17 C -0.12 -1.30 5.33 -26.48 -0.14 -1.44 16 18 C 0.05 0.59 7.30 -79.51 -0.58 0.01 16 19 C 0.57 5.43 8.34 34.49 0.29 5.72 16 20 O -0.48 -5.49 17.74 -19.24 -0.34 -5.83 16 21 O -0.49 -3.46 13.43 -40.65 -0.55 -4.00 16 22 N -0.20 -2.71 12.51 35.26 0.44 -2.26 16 23 O -0.14 -2.19 11.82 -30.22 -0.36 -2.55 16 24 C 0.10 1.47 5.76 -3.71 -0.02 1.45 16 25 C -0.13 -2.53 5.15 -26.61 -0.14 -2.66 16 26 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.37 7.00 -51.93 -0.36 1.01 16 32 H 0.13 1.13 6.94 -51.93 -0.36 0.77 16 33 H 0.12 1.24 7.90 -51.93 -0.41 0.83 16 34 H 0.42 0.67 9.11 45.56 0.42 1.08 16 35 H 0.06 0.80 4.54 -51.93 -0.24 0.57 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.11 2.42 6.03 -51.93 -0.31 2.11 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -31.47 320.57 -6.34 -37.80 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -3.74 Total: 0.19 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -1.50 Total: 0.13 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.55 Total: -35.04 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -1.46 Total: -23.10 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.47 -6.34 -37.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480019.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.089 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds