Wall clock time and date at job start Tue Mar 31 2020 07:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47065 * 70.81711 * 3 2 1 5 5 C 1.37098 * 119.99786 * 263.87750 * 4 3 2 6 6 H 1.08001 * 119.99511 * 201.21120 * 5 4 3 7 7 C 1.38943 * 120.00334 * 21.21171 * 5 4 3 8 8 N 1.31416 * 119.99867 * 11.12341 * 7 5 4 9 9 Si 1.86801 * 120.00078 * 191.12467 * 7 5 4 10 10 H 1.48501 * 109.46890 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47267 * 120.00126 * 9 7 5 12 12 H 1.48506 * 109.47012 * 239.99983 * 9 7 5 13 13 C 1.34776 * 119.99795 * 83.87175 * 4 3 2 14 14 O 1.21297 * 119.99719 * 185.13684 * 13 4 3 15 15 C 1.50700 * 120.00391 * 5.14375 * 13 4 3 16 16 H 1.09006 * 110.80289 * 324.23745 * 15 13 4 17 17 C 1.54999 * 110.90551 * 87.85705 * 15 13 4 18 18 O 1.44389 * 103.48692 * 155.22426 * 17 15 13 19 19 C 1.43742 * 106.97463 * 319.94308 * 18 17 15 20 20 H 1.08995 * 109.87604 * 266.93814 * 19 18 17 21 21 C 1.53001 * 109.87853 * 145.93638 * 19 18 17 22 22 C 1.52998 * 109.46851 * 66.70492 * 21 19 18 23 23 C 1.50703 * 109.47169 * 179.97438 * 22 21 19 24 24 O 1.20830 * 119.99428 * 0.02562 * 23 22 21 25 25 O 1.34224 * 120.00192 * 179.97438 * 23 22 21 26 26 C 1.54098 * 107.42127 * 26.43449 * 19 18 17 27 27 H 1.09000 * 109.47560 * 310.81769 * 3 2 1 28 28 H 1.08999 * 109.46695 * 190.81531 * 3 2 1 29 29 H 0.97006 * 119.99772 * 179.97438 * 8 7 5 30 30 H 1.08998 * 110.61893 * 36.72482 * 17 15 13 31 31 H 1.09001 * 110.75342 * 273.78753 * 17 15 13 32 32 H 1.08998 * 109.46873 * 306.70631 * 21 19 18 33 33 H 1.08997 * 109.46712 * 186.70444 * 21 19 18 34 34 H 1.08997 * 109.47424 * 299.99516 * 22 21 19 35 35 H 1.08998 * 109.47269 * 60.00382 * 22 21 19 36 36 H 0.96700 * 117.00074 * 179.97438 * 25 23 22 37 37 H 1.09008 * 110.48238 * 116.72365 * 26 19 18 38 38 H 1.08998 * 110.48822 * 239.36833 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.4530 -1.3046 5 6 3.4449 -1.7663 -1.4872 6 1 4.1072 -2.0420 -2.2945 7 6 2.9461 -2.7426 -0.6336 8 7 1.9781 -2.4495 0.2054 9 14 3.6516 -4.4717 -0.6787 10 1 4.7238 -4.5423 -1.7037 11 1 4.2155 -4.8111 0.6524 12 1 2.5758 -5.4365 -1.0210 13 6 3.2032 0.4208 -2.3252 14 8 3.5181 0.0285 -3.4289 15 6 2.9315 1.8851 -2.0951 16 1 2.1260 2.0207 -1.3733 17 6 4.2161 2.6203 -1.6346 18 8 3.9817 3.9885 -2.0320 19 6 3.3508 3.9484 -3.3229 20 1 4.1051 4.0195 -4.1064 21 6 2.3563 5.1040 -3.4520 22 6 3.1160 6.4320 -3.4603 23 6 2.1366 7.5703 -3.5881 24 8 0.9524 7.3425 -3.6642 25 8 2.5797 8.8369 -3.6163 26 6 2.6076 2.6029 -3.4316 27 1 2.9717 -0.6709 0.7777 28 1 2.9708 1.0102 0.1928 29 1 1.6296 -3.1313 0.8011 30 1 5.0920 2.2176 -2.1432 31 1 4.3350 2.5496 -0.5535 32 1 1.6663 5.0854 -2.6085 33 1 1.7968 4.9996 -4.3816 34 1 3.6755 6.5364 -2.5307 35 1 3.8061 6.4506 -4.3038 36 1 1.9138 9.5332 -3.6998 37 1 1.5341 2.7667 -3.5270 38 1 2.9832 2.0268 -4.2772 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:40 Heat of formation + Delta-G solvation = -142.115431 kcal Electronic energy + Delta-G solvation = -23834.266068 eV Core-core repulsion = 20063.232463 eV Total energy + Delta-G solvation = -3771.033605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49933 -39.90396 -38.22216 -36.40246 -35.83703 -34.39689 -33.81135 -32.20933 -31.49037 -29.04112 -27.49810 -25.22785 -24.80320 -22.63275 -21.38646 -20.75753 -18.99616 -18.27973 -17.96288 -17.12331 -16.74844 -16.46606 -16.30299 -15.61773 -15.22656 -15.12771 -14.34123 -14.08984 -13.90219 -13.53561 -13.42116 -13.11152 -12.98856 -12.60107 -12.17664 -12.02085 -11.93766 -11.75841 -11.59365 -11.37419 -11.28829 -11.22928 -11.04663 -10.87855 -10.68780 -10.59537 -10.44822 -10.39691 -10.34370 -9.59205 -9.33426 -8.69747 -8.11182 -6.53515 -4.11813 2.01740 2.83911 3.04036 3.18188 3.23550 3.42726 3.70609 3.89020 3.98158 4.08651 4.57569 4.68800 4.74075 4.84274 4.87746 4.91489 5.09952 5.25012 5.28461 5.37639 5.40223 5.41820 5.62957 5.73690 5.80694 5.89371 5.95299 6.10468 6.11184 6.24247 6.31160 6.36117 6.55405 6.96196 7.39102 7.67844 7.83060 8.20705 8.72310 8.92083 9.11109 9.63699 10.51169 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.030976 B = 0.003313 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.711385 B = 8448.252464 C = 8879.047897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.248 3.752 3 C 0.221 3.779 4 N -0.442 5.442 5 C -0.307 4.307 6 H 0.107 0.893 7 C 0.030 3.970 8 N -0.886 5.886 9 Si 0.933 3.067 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.465 3.535 14 O -0.569 6.569 15 C -0.141 4.141 16 H 0.094 0.906 17 C 0.065 3.935 18 O -0.375 6.375 19 C 0.079 3.921 20 H 0.072 0.928 21 C -0.108 4.108 22 C -0.111 4.111 23 C 0.477 3.523 24 O -0.517 6.517 25 O -0.521 6.521 26 C -0.136 4.136 27 H 0.135 0.865 28 H 0.079 0.921 29 H 0.274 0.726 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.408 0.592 37 H 0.077 0.923 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.810 15.761 -1.975 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.070 4.070 3 C 0.093 3.907 4 N -0.161 5.161 5 C -0.434 4.434 6 H 0.125 0.875 7 C -0.172 4.172 8 N -0.526 5.526 9 Si 0.760 3.240 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.208 1.208 13 C 0.253 3.747 14 O -0.451 6.451 15 C -0.163 4.163 16 H 0.112 0.888 17 C -0.012 4.012 18 O -0.294 6.294 19 C 0.021 3.979 20 H 0.090 0.910 21 C -0.146 4.146 22 C -0.148 4.148 23 C 0.320 3.680 24 O -0.405 6.405 25 O -0.332 6.332 26 C -0.174 4.174 27 H 0.152 0.848 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.266 0.734 37 H 0.096 0.904 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.224 15.240 -2.250 15.974 hybrid contribution -0.078 -0.759 0.058 0.766 sum 4.146 14.481 -2.193 15.221 Atomic orbital electron populations 1.80903 1.13635 1.12449 1.08507 1.29281 0.95361 0.89864 0.92539 1.18812 0.81605 0.99886 0.90369 1.43601 1.56372 1.08953 1.07221 1.19797 1.26793 0.80862 1.15996 0.87503 1.25352 0.94995 1.00364 0.96532 1.69743 1.24053 1.35328 1.23430 0.85736 0.78857 0.81139 0.78266 1.19139 1.20448 1.20807 1.19751 0.83539 0.86750 0.84645 1.90533 1.52069 1.79310 1.23204 1.22856 0.99630 0.94851 0.98995 0.88796 1.23470 0.96069 0.80834 1.00848 1.88807 1.80241 1.25828 1.34544 1.22745 0.94013 0.94580 0.86525 0.90987 1.21686 0.97520 0.90968 1.04379 1.21397 0.97234 0.89894 1.06321 1.23744 0.89213 0.83560 0.71482 1.90741 1.18936 1.85105 1.45706 1.84555 1.45832 1.17522 1.85338 1.22955 1.01399 0.94461 0.98558 0.84757 0.90296 0.91546 0.91288 0.88389 0.90007 0.89763 0.86780 0.87647 0.73378 0.90425 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.29 18.54 42.15 0.78 -10.51 16 2 C 0.25 5.43 12.86 -20.76 -0.27 5.16 16 3 C 0.22 4.25 4.78 -6.82 -0.03 4.22 16 4 N -0.44 -9.89 2.60 -117.93 -0.31 -10.20 16 5 C -0.31 -7.64 9.30 -14.94 -0.14 -7.78 16 6 H 0.11 2.79 7.43 -52.49 -0.39 2.40 16 7 C 0.03 0.73 5.10 -17.47 -0.09 0.64 16 8 N -0.89 -21.78 9.05 55.50 0.50 -21.27 16 9 Si 0.93 19.34 29.57 -169.99 -5.03 14.32 16 10 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 11 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 C 0.47 10.00 6.77 -10.99 -0.07 9.93 16 14 O -0.57 -14.15 15.29 5.54 0.08 -14.06 16 15 C -0.14 -2.34 2.52 -89.59 -0.23 -2.57 16 16 H 0.09 1.54 6.36 -51.93 -0.33 1.21 16 17 C 0.06 0.90 7.01 38.21 0.27 1.16 16 18 O -0.37 -4.98 10.82 -35.23 -0.38 -5.36 16 19 C 0.08 0.97 3.40 -26.16 -0.09 0.88 16 20 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 21 C -0.11 -1.18 3.99 -26.73 -0.11 -1.28 16 22 C -0.11 -0.99 5.72 -27.88 -0.16 -1.15 16 23 C 0.48 4.81 8.33 36.01 0.30 5.11 16 24 O -0.52 -6.99 16.74 -18.75 -0.31 -7.30 16 25 O -0.52 -3.97 13.42 -39.24 -0.53 -4.49 16 26 C -0.14 -2.04 6.18 -25.03 -0.15 -2.20 16 27 H 0.13 2.66 6.37 -51.93 -0.33 2.33 16 28 H 0.08 1.16 6.00 -51.93 -0.31 0.85 16 29 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 31 H 0.10 1.16 7.49 -51.93 -0.39 0.77 16 32 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 33 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.11 0.98 7.89 -51.93 -0.41 0.57 16 35 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.41 1.47 9.10 45.56 0.41 1.88 16 37 H 0.08 1.13 7.70 -51.92 -0.40 0.73 16 38 H 0.10 1.65 6.82 -51.93 -0.35 1.29 16 LS Contribution 327.31 15.07 4.93 4.93 Total: -1.00 -32.48 327.31 -4.76 -37.25 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -3.74 Total: 4.57 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -0.77 Total: 12.13 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.98 Total: -41.98 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -1.14 Total: -31.22 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.48 -4.76 -37.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.868 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds