Wall clock time and date at job start Tue Mar 31 2020 07:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47065 * 70.81711 * 3 2 1 5 5 C 1.37098 * 119.99786 * 263.87750 * 4 3 2 6 6 H 1.08001 * 119.99511 * 201.21120 * 5 4 3 7 7 C 1.38943 * 120.00334 * 21.21171 * 5 4 3 8 8 N 1.31416 * 119.99867 * 11.12341 * 7 5 4 9 9 Si 1.86801 * 120.00078 * 191.12467 * 7 5 4 10 10 H 1.48501 * 109.46890 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47267 * 120.00126 * 9 7 5 12 12 H 1.48506 * 109.47012 * 239.99983 * 9 7 5 13 13 C 1.34776 * 119.99795 * 83.87175 * 4 3 2 14 14 O 1.21297 * 119.99719 * 185.13684 * 13 4 3 15 15 C 1.50700 * 120.00391 * 5.14375 * 13 4 3 16 16 H 1.09006 * 110.80289 * 324.23745 * 15 13 4 17 17 C 1.54999 * 110.90551 * 87.85705 * 15 13 4 18 18 O 1.44389 * 103.48692 * 155.22426 * 17 15 13 19 19 C 1.43742 * 106.97463 * 319.94308 * 18 17 15 20 20 H 1.08995 * 109.87604 * 266.93814 * 19 18 17 21 21 C 1.53001 * 109.87853 * 145.93638 * 19 18 17 22 22 C 1.52998 * 109.46851 * 66.70492 * 21 19 18 23 23 C 1.50703 * 109.47169 * 179.97438 * 22 21 19 24 24 O 1.20830 * 119.99428 * 0.02562 * 23 22 21 25 25 O 1.34224 * 120.00192 * 179.97438 * 23 22 21 26 26 C 1.54098 * 107.42127 * 26.43449 * 19 18 17 27 27 H 1.09000 * 109.47560 * 310.81769 * 3 2 1 28 28 H 1.08999 * 109.46695 * 190.81531 * 3 2 1 29 29 H 0.97006 * 119.99772 * 179.97438 * 8 7 5 30 30 H 1.08998 * 110.61893 * 36.72482 * 17 15 13 31 31 H 1.09001 * 110.75342 * 273.78753 * 17 15 13 32 32 H 1.08998 * 109.46873 * 306.70631 * 21 19 18 33 33 H 1.08997 * 109.46712 * 186.70444 * 21 19 18 34 34 H 1.08997 * 109.47424 * 299.99516 * 22 21 19 35 35 H 1.08998 * 109.47269 * 60.00382 * 22 21 19 36 36 H 0.96700 * 117.00074 * 179.97438 * 25 23 22 37 37 H 1.09008 * 110.48238 * 116.72365 * 26 19 18 38 38 H 1.08998 * 110.48822 * 239.36833 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.4530 -1.3046 5 6 3.4449 -1.7663 -1.4872 6 1 4.1072 -2.0420 -2.2945 7 6 2.9461 -2.7426 -0.6336 8 7 1.9781 -2.4495 0.2054 9 14 3.6516 -4.4717 -0.6787 10 1 4.7238 -4.5423 -1.7037 11 1 4.2155 -4.8111 0.6524 12 1 2.5758 -5.4365 -1.0210 13 6 3.2032 0.4208 -2.3252 14 8 3.5181 0.0285 -3.4289 15 6 2.9315 1.8851 -2.0951 16 1 2.1260 2.0207 -1.3733 17 6 4.2161 2.6203 -1.6346 18 8 3.9817 3.9885 -2.0320 19 6 3.3508 3.9484 -3.3229 20 1 4.1051 4.0195 -4.1064 21 6 2.3563 5.1040 -3.4520 22 6 3.1160 6.4320 -3.4603 23 6 2.1366 7.5703 -3.5881 24 8 0.9524 7.3425 -3.6642 25 8 2.5797 8.8369 -3.6163 26 6 2.6076 2.6029 -3.4316 27 1 2.9717 -0.6709 0.7777 28 1 2.9708 1.0102 0.1928 29 1 1.6296 -3.1313 0.8011 30 1 5.0920 2.2176 -2.1432 31 1 4.3350 2.5496 -0.5535 32 1 1.6663 5.0854 -2.6085 33 1 1.7968 4.9996 -4.3816 34 1 3.6755 6.5364 -2.5307 35 1 3.8061 6.4506 -4.3038 36 1 1.9138 9.5332 -3.6998 37 1 1.5341 2.7667 -3.5270 38 1 2.9832 2.0268 -4.2772 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:39 Heat of formation + Delta-G solvation = -164.659176 kcal Electronic energy + Delta-G solvation = -23835.243638 eV Core-core repulsion = 20063.232463 eV Total energy + Delta-G solvation = -3772.011175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.46501 -41.09059 -39.63399 -37.61148 -37.12380 -36.20134 -34.70615 -33.86765 -32.91215 -30.07732 -29.16088 -26.90385 -25.78003 -23.99237 -22.38930 -21.59264 -20.52863 -19.75082 -19.02749 -18.64523 -17.96838 -17.59911 -17.26958 -16.88454 -16.53175 -16.24415 -15.83209 -15.65719 -15.43037 -14.76727 -14.46044 -14.32385 -14.25546 -13.95219 -13.83159 -13.50004 -13.19105 -13.03736 -12.92927 -12.89952 -12.52014 -12.44957 -12.27808 -12.17210 -12.08605 -12.01956 -11.87585 -11.61282 -11.53172 -11.13852 -10.62926 -10.45348 -9.93419 -8.38055 -6.02451 1.26695 1.37427 1.47789 1.59311 1.75402 2.01204 2.20212 2.25421 2.33980 2.77808 3.02197 3.17089 3.51127 3.56885 3.76848 3.91536 3.96671 4.06261 4.14694 4.29951 4.35154 4.51862 4.57061 4.66890 4.79810 4.80864 4.84154 4.96527 5.02450 5.07967 5.11267 5.27775 5.45978 5.67906 5.89334 6.03040 6.38526 6.99001 7.04438 7.10102 7.32469 7.87671 8.63924 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.030976 B = 0.003313 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.711385 B = 8448.252464 C = 8879.047897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.259 3.741 3 C 0.222 3.778 4 N -0.454 5.454 5 C -0.331 4.331 6 H 0.085 0.915 7 C 0.002 3.998 8 N -0.900 5.900 9 Si 0.990 3.010 10 H -0.270 1.270 11 H -0.263 1.263 12 H -0.291 1.291 13 C 0.463 3.537 14 O -0.610 6.610 15 C -0.139 4.139 16 H 0.100 0.900 17 C 0.072 3.928 18 O -0.371 6.371 19 C 0.087 3.913 20 H 0.090 0.910 21 C -0.104 4.104 22 C -0.107 4.107 23 C 0.483 3.517 24 O -0.559 6.559 25 O -0.514 6.514 26 C -0.138 4.138 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.274 0.726 30 H 0.064 0.936 31 H 0.126 0.874 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.426 0.574 37 H 0.077 0.923 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.081 17.278 -1.300 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.058 4.058 3 C 0.096 3.904 4 N -0.173 5.173 5 C -0.459 4.459 6 H 0.103 0.897 7 C -0.199 4.199 8 N -0.540 5.540 9 Si 0.815 3.185 10 H -0.194 1.194 11 H -0.188 1.188 12 H -0.218 1.218 13 C 0.252 3.748 14 O -0.495 6.495 15 C -0.161 4.161 16 H 0.118 0.882 17 C -0.005 4.005 18 O -0.290 6.290 19 C 0.029 3.971 20 H 0.108 0.892 21 C -0.141 4.141 22 C -0.144 4.144 23 C 0.328 3.672 24 O -0.450 6.450 25 O -0.327 6.327 26 C -0.176 4.176 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.144 0.856 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.287 0.713 37 H 0.096 0.904 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.506 16.803 -1.553 17.751 hybrid contribution -0.479 -1.185 -0.218 1.296 sum 5.027 15.619 -1.771 16.503 Atomic orbital electron populations 1.80903 1.14878 1.13862 1.09686 1.29824 0.95907 0.88679 0.91410 1.19118 0.79922 1.02618 0.88751 1.43769 1.56456 1.08464 1.08626 1.19723 1.27443 0.82617 1.16093 0.89743 1.25943 0.94989 1.03010 0.95974 1.69833 1.24452 1.36068 1.23646 0.84899 0.77753 0.77141 0.78712 1.19418 1.18805 1.21809 1.20567 0.81814 0.88600 0.83787 1.90505 1.53563 1.80559 1.24878 1.22854 1.01487 0.91554 1.00200 0.88221 1.23482 0.94060 0.80572 1.02431 1.88817 1.80209 1.25100 1.34883 1.22748 0.94319 0.93269 0.86734 0.89180 1.21585 0.97071 0.91743 1.03734 1.21385 0.96941 0.88244 1.07840 1.23900 0.88603 0.84394 0.70284 1.90736 1.20653 1.85758 1.47865 1.84512 1.46414 1.17225 1.84598 1.22970 1.01830 0.95778 0.97070 0.85031 0.85099 0.91602 0.91726 0.85646 0.91575 0.89788 0.85888 0.85163 0.71304 0.90426 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.23 18.54 20.01 0.37 -23.86 16 2 C 0.26 11.16 12.86 89.44 1.15 12.31 16 3 C 0.22 8.24 4.78 84.57 0.40 8.65 16 4 N -0.45 -20.20 2.60 -645.40 -1.68 -21.88 16 5 C -0.33 -16.63 9.30 84.04 0.78 -15.85 16 6 H 0.08 4.55 7.43 -2.91 -0.02 4.52 16 7 C 0.00 0.09 5.10 84.92 0.43 0.53 16 8 N -0.90 -43.91 9.05 21.66 0.20 -43.72 16 9 Si 0.99 39.57 29.57 68.60 2.03 41.60 16 10 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 11 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 12 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 13 C 0.46 19.86 6.77 87.66 0.59 20.45 16 14 O -0.61 -31.02 15.29 -3.08 -0.05 -31.07 16 15 C -0.14 -4.42 2.52 -10.13 -0.03 -4.45 16 16 H 0.10 3.07 6.36 -2.38 -0.02 3.06 16 17 C 0.07 1.79 7.01 72.67 0.51 2.30 16 18 O -0.37 -8.71 10.82 -148.98 -1.61 -10.32 16 19 C 0.09 1.94 3.40 30.97 0.11 2.05 16 20 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 21 C -0.10 -2.07 3.99 30.59 0.12 -1.95 16 22 C -0.11 -1.60 5.72 29.85 0.17 -1.43 16 23 C 0.48 8.77 8.33 71.24 0.59 9.37 16 24 O -0.56 -14.59 16.74 21.95 0.37 -14.22 16 25 O -0.51 -6.52 13.42 -51.36 -0.69 -7.21 16 26 C -0.14 -4.07 6.18 31.69 0.20 -3.87 16 27 H 0.13 5.04 6.37 -2.39 -0.02 5.02 16 28 H 0.13 3.44 6.00 -2.39 -0.01 3.43 16 29 H 0.27 12.97 8.31 -92.70 -0.77 12.20 16 30 H 0.06 1.71 8.04 -2.39 -0.02 1.69 16 31 H 0.13 2.45 7.49 -2.39 -0.02 2.43 16 32 H 0.07 1.54 8.10 -2.39 -0.02 1.52 16 33 H 0.08 1.69 8.10 -2.39 -0.02 1.67 16 34 H 0.12 1.69 7.89 -2.39 -0.02 1.67 16 35 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.43 2.08 9.10 -74.06 -0.67 1.41 16 37 H 0.08 2.24 7.70 -2.38 -0.02 2.22 16 38 H 0.08 2.66 6.82 -2.39 -0.02 2.64 16 Total: -1.00 -71.04 327.31 4.41 -66.63 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.44 Total: 15.96 kcal Atomic # 6 Polarization: 23.05 SS G_CDS: 5.03 Total: 28.09 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -1.11 Total: -89.46 kcal Atomic # 8 Polarization: -60.84 SS G_CDS: -1.98 Total: -62.82 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -71.04 4.41 -66.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.029 kcal (2) G-P(sol) polarization free energy of solvation -71.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds