Wall clock time and date at job start Tue Mar 31 2020 07:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34772 * 116.99963 * 2 1 4 4 O 1.21534 * 120.00129 * 359.97438 * 3 2 1 5 5 C 1.47277 * 120.00130 * 180.02562 * 3 2 1 6 6 N 1.36108 * 126.46001 * 0.17334 * 5 3 2 7 7 C 1.29909 * 108.47188 * 180.27083 * 6 5 3 8 8 O 1.34053 * 109.26620 * 359.74058 * 7 6 5 9 9 C 1.34231 * 108.24085 * 359.97438 * 8 7 6 10 10 C 1.50697 * 126.53108 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47648 * 270.02669 * 10 9 8 12 12 C 1.50697 * 109.47648 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99927 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00282 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00000 * 179.97438 * 14 12 11 16 16 H 1.08994 * 109.47185 * 325.00421 * 15 14 12 17 17 C 1.53003 * 109.46991 * 85.00701 * 15 14 12 18 18 C 1.50702 * 109.47119 * 205.00085 * 15 14 12 19 19 H 1.08007 * 119.99981 * 354.48131 * 18 15 14 20 20 C 1.37872 * 120.00181 * 174.48618 * 18 15 14 21 21 N 1.31507 * 120.00188 * 164.58940 * 20 18 15 22 22 Si 1.86797 * 119.99894 * 344.86064 * 20 18 15 23 23 H 1.48501 * 109.47054 * 269.72685 * 22 20 18 24 24 H 1.48506 * 109.47355 * 29.72399 * 22 20 18 25 25 H 1.48500 * 109.47516 * 149.72369 * 22 20 18 26 26 H 1.09003 * 109.46721 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46710 * 299.99976 * 1 2 3 28 28 H 1.08991 * 109.47083 * 60.00600 * 1 2 3 29 29 H 1.08005 * 125.36996 * 179.77101 * 7 6 5 30 30 H 1.09001 * 109.47433 * 150.02362 * 10 9 8 31 31 H 1.09001 * 109.47090 * 30.02909 * 10 9 8 32 32 H 1.09001 * 109.46954 * 59.99399 * 11 10 9 33 33 H 1.09001 * 109.47071 * 300.00252 * 11 10 9 34 34 H 0.97002 * 120.00007 * 0.02562 * 14 12 11 35 35 H 1.09005 * 109.46269 * 293.54281 * 17 15 14 36 36 H 1.08992 * 109.47288 * 53.53833 * 17 15 14 37 37 H 1.08997 * 109.47143 * 173.55043 * 17 15 14 38 38 H 0.97004 * 120.00365 * 355.18112 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5346 1.2780 -0.0006 6 7 4.3997 0.2271 -0.0044 7 6 5.6126 0.6924 0.0022 8 8 5.5723 2.0324 0.0047 9 6 4.2854 2.4140 -0.0012 10 6 3.7696 3.8300 -0.0015 11 6 3.5884 4.3072 1.4407 12 6 3.0721 5.7230 1.4404 13 8 2.8695 6.2943 0.3899 14 7 2.8355 6.3544 2.6073 15 6 2.3341 7.7309 2.6069 16 1 2.7678 8.2753 1.7682 17 6 0.8100 7.7184 2.4736 18 6 2.7198 8.4064 3.8977 19 1 3.2035 7.8402 4.6800 20 6 2.4552 9.7472 4.0800 21 7 2.5048 10.2692 5.2860 22 14 2.0189 10.8207 2.6148 23 1 3.2586 11.4037 2.0417 24 1 1.3364 9.9979 1.5840 25 1 1.1148 11.9139 3.0539 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 6.5117 0.0941 0.0048 30 1 2.8114 3.8676 -0.5198 31 1 4.4839 4.4767 -0.5112 32 1 4.5466 4.2696 1.9590 33 1 2.8742 3.6606 1.9504 34 1 2.9979 5.8976 3.4475 35 1 0.5344 7.3347 1.4912 36 1 0.3828 7.0792 3.2462 37 1 0.4269 8.7324 2.5880 38 1 2.6584 9.6989 6.0554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330790959.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:45 Heat of formation + Delta-G solvation = -104.931668 kcal Electronic energy + Delta-G solvation = -23508.108000 eV Core-core repulsion = 19738.686804 eV Total energy + Delta-G solvation = -3769.421196 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.84625 -40.42421 -39.15488 -36.77336 -35.24418 -35.16595 -33.98511 -32.45276 -30.44681 -29.36100 -28.08013 -25.45642 -24.76700 -24.14152 -22.34329 -21.08643 -20.58084 -19.56278 -18.64230 -17.87563 -17.32916 -17.22403 -16.60061 -16.36541 -16.01798 -15.62553 -15.24494 -14.74849 -14.09470 -13.83218 -13.58555 -13.56739 -13.13181 -12.99843 -12.55714 -12.37038 -12.26587 -12.14526 -11.76016 -11.65818 -11.46208 -11.27010 -11.15056 -11.03489 -10.73571 -10.54564 -10.12716 -9.67461 -9.47455 -9.15190 -9.03015 -8.42025 -8.16891 -6.57676 -4.22928 0.61026 1.57158 2.05948 2.44876 2.74669 3.20807 3.41230 3.45159 3.59867 3.67612 3.88444 4.30118 4.43732 4.52427 4.80995 4.85757 4.86672 4.95899 5.03681 5.17284 5.24570 5.27217 5.41639 5.59431 5.65433 5.84694 5.88573 6.11766 6.40137 6.55611 6.68351 6.96645 7.02988 7.28654 7.37953 7.49703 7.65363 8.23016 8.45195 8.68926 8.95042 9.45966 10.81729 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.003333 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.273998 B = 8399.148632 C = 9046.903642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.341 6.341 3 C 0.551 3.449 4 O -0.487 6.487 5 C -0.068 4.068 6 N -0.449 5.449 7 C 0.175 3.825 8 O -0.191 6.191 9 C 0.074 3.926 10 C -0.033 4.033 11 C -0.135 4.135 12 C 0.507 3.493 13 O -0.555 6.555 14 N -0.702 5.702 15 C 0.241 3.759 16 H 0.043 0.957 17 C -0.154 4.154 18 C -0.617 4.617 19 H 0.061 0.939 20 C 0.040 3.960 21 N -0.899 5.899 22 Si 1.039 2.961 23 H -0.284 1.284 24 H -0.266 1.266 25 H -0.284 1.284 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.259 0.741 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.393 0.607 35 H 0.030 0.970 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 -21.704 -10.006 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.256 6.256 3 C 0.394 3.606 4 O -0.374 6.374 5 C -0.185 4.185 6 N -0.177 5.177 7 C -0.054 4.054 8 O -0.077 6.077 9 C 0.017 3.983 10 C -0.071 4.071 11 C -0.175 4.175 12 C 0.292 3.708 13 O -0.435 6.435 14 N -0.349 5.349 15 C 0.137 3.863 16 H 0.061 0.939 17 C -0.213 4.213 18 C -0.655 4.655 19 H 0.079 0.921 20 C -0.167 4.167 21 N -0.532 5.532 22 Si 0.866 3.134 23 H -0.210 1.210 24 H -0.192 1.192 25 H -0.210 1.210 26 H 0.122 0.878 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.274 0.726 30 H 0.144 0.856 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.226 0.774 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.967 -20.044 -11.167 23.029 hybrid contribution 0.626 -1.419 1.076 1.888 sum 2.593 -21.464 -10.091 23.859 Atomic orbital electron populations 1.23362 0.75604 1.03940 1.02966 1.86636 1.23539 1.31572 1.83876 1.19378 0.86105 0.81998 0.73097 1.90954 1.65344 1.35618 1.45526 1.20226 0.92476 0.89353 1.16439 1.70833 0.99929 1.31097 1.15802 1.28138 0.98454 0.77998 1.00779 1.84458 1.28080 1.26350 1.68825 1.23972 0.80116 0.97996 0.96254 1.20275 1.03881 0.84318 0.98575 1.21588 1.03411 0.95928 0.96613 1.20198 0.78441 0.87381 0.84777 1.90658 1.53673 1.67817 1.31319 1.46273 1.64861 1.16770 1.07015 1.19074 0.90372 0.78144 0.98675 0.93886 1.22439 0.99070 1.01077 0.98710 1.22105 1.45222 0.97407 1.00753 0.92058 1.25689 0.93303 0.96094 1.01567 1.70826 1.44309 1.39494 0.98607 0.84183 0.77604 0.76056 0.75601 1.21029 1.19152 1.20957 0.87815 0.91498 0.91575 0.72586 0.85649 0.88083 0.88856 0.88793 0.77398 0.95046 0.93839 0.92463 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 101.05 1.07 1.36 16 2 O -0.34 -4.08 10.58 -40.69 -0.43 -4.51 16 3 C 0.55 7.38 7.96 34.40 0.27 7.65 16 4 O -0.49 -7.35 14.60 -19.29 -0.28 -7.63 16 5 C -0.07 -0.85 7.04 -83.04 -0.58 -1.44 16 6 N -0.45 -5.10 11.36 -11.50 -0.13 -5.23 16 7 C 0.18 1.37 13.19 51.95 0.69 2.06 16 8 O -0.19 -1.88 10.72 6.57 0.07 -1.81 16 9 C 0.07 0.87 6.70 -35.05 -0.23 0.63 16 10 C -0.03 -0.43 4.49 -27.89 -0.13 -0.55 16 11 C -0.14 -1.84 5.68 -27.89 -0.16 -2.00 16 12 C 0.51 9.51 7.79 -10.99 -0.09 9.43 16 13 O -0.56 -12.29 15.64 5.56 0.09 -12.20 16 14 N -0.70 -14.16 5.07 -54.93 -0.28 -14.44 16 15 C 0.24 5.82 2.11 -69.08 -0.15 5.67 16 16 H 0.04 1.12 6.21 -51.93 -0.32 0.80 16 17 C -0.15 -3.54 8.76 37.16 0.33 -3.22 16 18 C -0.62 -16.71 9.02 -34.44 -0.31 -17.02 16 19 H 0.06 1.73 7.96 -52.48 -0.42 1.31 16 20 C 0.04 1.12 5.33 -17.82 -0.09 1.03 16 21 N -0.90 -26.84 13.69 55.43 0.76 -26.08 16 22 Si 1.04 25.05 26.17 -169.99 -4.45 20.61 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.09 5.53 56.52 0.31 -5.78 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.26 0.55 8.06 -52.48 -0.42 0.12 16 30 H 0.13 1.83 6.46 -51.93 -0.34 1.49 16 31 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.39 7.02 8.53 -40.82 -0.35 6.68 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.32 5.06 -51.93 -0.26 1.06 16 38 H 0.27 7.94 8.73 -40.82 -0.36 7.58 16 LS Contribution 332.30 15.07 5.01 5.01 Total: -1.00 -34.88 332.30 -3.76 -38.64 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.73 Total: 4.05 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 0.61 Total: 3.60 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.35 Total: -45.75 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.55 Total: -26.15 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.45 Total: 20.61 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.88 -3.76 -38.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330790959.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.293 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds