Wall clock time and date at job start Tue Mar 31 2020 07:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34772 * 116.99963 * 2 1 4 4 O 1.21534 * 120.00129 * 359.97438 * 3 2 1 5 5 C 1.47277 * 120.00130 * 180.02562 * 3 2 1 6 6 N 1.36108 * 126.46001 * 0.17334 * 5 3 2 7 7 C 1.29909 * 108.47188 * 180.27083 * 6 5 3 8 8 O 1.34053 * 109.26620 * 359.74058 * 7 6 5 9 9 C 1.34231 * 108.24085 * 359.97438 * 8 7 6 10 10 C 1.50697 * 126.53108 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47648 * 270.02669 * 10 9 8 12 12 C 1.50697 * 109.47648 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99927 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00282 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00000 * 179.97438 * 14 12 11 16 16 H 1.08994 * 109.47185 * 325.00421 * 15 14 12 17 17 C 1.53003 * 109.46991 * 85.00701 * 15 14 12 18 18 C 1.50702 * 109.47119 * 205.00085 * 15 14 12 19 19 H 1.08007 * 119.99981 * 354.48131 * 18 15 14 20 20 C 1.37872 * 120.00181 * 174.48618 * 18 15 14 21 21 N 1.31507 * 120.00188 * 164.58940 * 20 18 15 22 22 Si 1.86797 * 119.99894 * 344.86064 * 20 18 15 23 23 H 1.48501 * 109.47054 * 269.72685 * 22 20 18 24 24 H 1.48506 * 109.47355 * 29.72399 * 22 20 18 25 25 H 1.48500 * 109.47516 * 149.72369 * 22 20 18 26 26 H 1.09003 * 109.46721 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46710 * 299.99976 * 1 2 3 28 28 H 1.08991 * 109.47083 * 60.00600 * 1 2 3 29 29 H 1.08005 * 125.36996 * 179.77101 * 7 6 5 30 30 H 1.09001 * 109.47433 * 150.02362 * 10 9 8 31 31 H 1.09001 * 109.47090 * 30.02909 * 10 9 8 32 32 H 1.09001 * 109.46954 * 59.99399 * 11 10 9 33 33 H 1.09001 * 109.47071 * 300.00252 * 11 10 9 34 34 H 0.97002 * 120.00007 * 0.02562 * 14 12 11 35 35 H 1.09005 * 109.46269 * 293.54281 * 17 15 14 36 36 H 1.08992 * 109.47288 * 53.53833 * 17 15 14 37 37 H 1.08997 * 109.47143 * 173.55043 * 17 15 14 38 38 H 0.97004 * 120.00365 * 355.18112 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5346 1.2780 -0.0006 6 7 4.3997 0.2271 -0.0044 7 6 5.6126 0.6924 0.0022 8 8 5.5723 2.0324 0.0047 9 6 4.2854 2.4140 -0.0012 10 6 3.7696 3.8300 -0.0015 11 6 3.5884 4.3072 1.4407 12 6 3.0721 5.7230 1.4404 13 8 2.8695 6.2943 0.3899 14 7 2.8355 6.3544 2.6073 15 6 2.3341 7.7309 2.6069 16 1 2.7678 8.2753 1.7682 17 6 0.8100 7.7184 2.4736 18 6 2.7198 8.4064 3.8977 19 1 3.2035 7.8402 4.6800 20 6 2.4552 9.7472 4.0800 21 7 2.5048 10.2692 5.2860 22 14 2.0189 10.8207 2.6148 23 1 3.2586 11.4037 2.0417 24 1 1.3364 9.9979 1.5840 25 1 1.1148 11.9139 3.0539 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 6.5117 0.0941 0.0048 30 1 2.8114 3.8676 -0.5198 31 1 4.4839 4.4767 -0.5112 32 1 4.5466 4.2696 1.9590 33 1 2.8742 3.6606 1.9504 34 1 2.9979 5.8976 3.4475 35 1 0.5344 7.3347 1.4912 36 1 0.3828 7.0792 3.2462 37 1 0.4269 8.7324 2.5880 38 1 2.6584 9.6989 6.0554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330790959.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:44 Heat of formation + Delta-G solvation = -132.834938 kcal Electronic energy + Delta-G solvation = -23509.317977 eV Core-core repulsion = 19738.686804 eV Total energy + Delta-G solvation = -3770.631173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.62556 -41.36904 -40.71762 -37.72652 -36.95216 -36.02700 -35.13355 -34.46598 -31.91904 -30.62178 -28.88824 -26.94253 -26.36625 -25.02055 -23.28929 -22.51339 -21.70078 -21.23007 -19.78865 -19.47989 -18.37356 -18.14250 -17.85749 -17.24675 -17.07411 -16.92325 -16.68953 -15.79273 -15.52574 -15.12314 -14.83177 -14.64811 -14.52335 -14.42397 -14.28743 -13.92198 -13.42186 -13.36521 -13.29297 -13.07570 -12.57570 -12.48507 -12.42152 -12.06310 -12.03167 -11.88571 -11.67681 -11.52344 -11.11394 -10.89170 -10.56915 -10.17997 -9.91022 -8.79930 -6.45663 -0.29049 0.83632 1.24546 1.48822 1.50050 1.66498 1.71144 1.72211 1.84720 2.43418 2.46662 3.00716 3.03514 3.34551 3.61687 3.77569 3.91776 4.02852 4.24077 4.29405 4.29938 4.35335 4.46223 4.52056 4.66540 4.71433 4.77664 4.85579 4.88290 5.04935 5.08294 5.20617 5.42306 5.61680 5.64967 6.00446 6.25164 6.51303 6.59461 6.80740 7.26818 7.40569 8.58857 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.003333 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.273998 B = 8399.148632 C = 9046.903642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.547 3.453 4 O -0.514 6.514 5 C -0.080 4.080 6 N -0.484 5.484 7 C 0.208 3.792 8 O -0.190 6.190 9 C 0.069 3.931 10 C -0.026 4.026 11 C -0.121 4.121 12 C 0.506 3.494 13 O -0.589 6.589 14 N -0.705 5.705 15 C 0.242 3.758 16 H 0.027 0.973 17 C -0.149 4.149 18 C -0.612 4.612 19 H 0.041 0.959 20 C -0.005 4.005 21 N -0.929 5.929 22 Si 1.073 2.927 23 H -0.275 1.275 24 H -0.249 1.249 25 H -0.279 1.279 26 H 0.136 0.864 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.313 0.687 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.404 0.596 35 H 0.036 0.964 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 -23.551 -10.958 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.392 3.608 4 O -0.403 6.403 5 C -0.197 4.197 6 N -0.212 5.212 7 C -0.021 4.021 8 O -0.076 6.076 9 C 0.011 3.989 10 C -0.064 4.064 11 C -0.160 4.160 12 C 0.293 3.707 13 O -0.471 6.471 14 N -0.353 5.353 15 C 0.138 3.862 16 H 0.045 0.955 17 C -0.208 4.208 18 C -0.650 4.650 19 H 0.059 0.941 20 C -0.206 4.206 21 N -0.564 5.564 22 Si 0.895 3.105 23 H -0.201 1.201 24 H -0.174 1.174 25 H -0.205 1.205 26 H 0.154 0.846 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.327 0.673 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.139 0.861 33 H 0.122 0.878 34 H 0.239 0.761 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.911 -21.953 -12.110 25.240 hybrid contribution 0.406 -1.006 1.381 1.756 sum 3.317 -22.959 -10.730 25.559 Atomic orbital electron populations 1.23659 0.73858 1.06063 1.02906 1.86629 1.25357 1.30967 1.83434 1.19645 0.86677 0.81998 0.72476 1.90932 1.66053 1.36381 1.46954 1.20268 0.92356 0.90168 1.16874 1.70846 1.01037 1.31128 1.18139 1.29410 0.99053 0.77239 0.96352 1.84481 1.26858 1.27459 1.68824 1.23540 0.80864 0.97065 0.97413 1.20038 1.03179 0.85396 0.97789 1.21510 1.04690 0.92097 0.97743 1.20978 0.77226 0.88964 0.83488 1.90640 1.54902 1.69125 1.32415 1.46135 1.65267 1.15561 1.08359 1.18791 0.91183 0.80043 0.96218 0.95508 1.22342 0.98004 1.01118 0.99302 1.22263 1.43994 0.97438 1.01314 0.94058 1.26844 0.93068 0.97869 1.02784 1.70927 1.46814 1.39581 0.99085 0.83736 0.78050 0.75196 0.73560 1.20107 1.17355 1.20496 0.84631 0.91673 0.91559 0.67284 0.87658 0.87821 0.86054 0.87762 0.76088 0.94454 0.93096 0.92823 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.57 113.37 1.20 1.64 16 2 O -0.35 -8.12 10.58 -56.83 -0.60 -8.72 16 3 C 0.55 14.48 7.96 70.20 0.56 15.04 16 4 O -0.51 -15.59 14.60 19.72 0.29 -15.30 16 5 C -0.08 -1.93 7.04 40.38 0.28 -1.64 16 6 N -0.48 -9.88 11.36 -305.22 -3.47 -13.35 16 7 C 0.21 2.47 13.19 130.53 1.72 4.20 16 8 O -0.19 -3.16 10.72 0.60 0.01 -3.15 16 9 C 0.07 1.50 6.70 25.20 0.17 1.67 16 10 C -0.03 -0.66 4.49 29.84 0.13 -0.52 16 11 C -0.12 -3.08 5.68 29.84 0.17 -2.91 16 12 C 0.51 18.50 7.79 87.66 0.68 19.18 16 13 O -0.59 -25.83 15.64 -3.03 -0.05 -25.88 16 14 N -0.70 -27.85 5.07 -446.10 -2.26 -30.11 16 15 C 0.24 11.58 2.11 44.25 0.09 11.67 16 16 H 0.03 1.39 6.21 -2.39 -0.01 1.37 16 17 C -0.15 -6.69 8.76 71.98 0.63 -6.06 16 18 C -0.61 -33.26 9.02 25.60 0.23 -33.03 16 19 H 0.04 2.36 7.96 -2.91 -0.02 2.34 16 20 C -0.01 -0.29 5.33 84.65 0.45 0.16 16 21 N -0.93 -56.14 13.69 21.44 0.29 -55.84 16 22 Si 1.07 50.18 26.17 68.60 1.80 51.97 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.25 -10.90 5.53 99.48 0.55 -10.35 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.31 -0.41 8.06 -2.91 -0.02 -0.43 16 30 H 0.11 3.09 6.46 -2.39 -0.02 3.07 16 31 H 0.10 2.48 8.10 -2.39 -0.02 2.46 16 32 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.40 14.06 8.53 -92.71 -0.79 13.27 16 35 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 2.41 5.06 -2.39 -0.01 2.40 16 38 H 0.26 15.65 8.73 -92.71 -0.81 14.84 16 Total: -1.00 -76.42 332.30 2.45 -73.97 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.12 Total: 17.02 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 6.32 Total: 9.40 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -5.44 Total: -99.30 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -0.35 Total: -53.06 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 1.80 Total: 51.97 kcal Total: -76.42 2.45 -73.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330790959.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.868 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds