Wall clock time and date at job start Tue Mar 31 2020 08:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46097 * 118.72608 * 2 1 4 4 C 1.53013 * 109.92437 * 161.62043 * 3 2 1 5 5 O 1.43247 * 108.67364 * 49.15651 * 4 3 2 6 6 C 1.43130 * 112.81903 * 291.45241 * 5 4 3 7 7 H 1.09002 * 109.62984 * 289.81324 * 6 5 4 8 8 C 1.50703 * 109.29269 * 169.96639 * 6 5 4 9 9 O 1.21291 * 119.99875 * 341.18134 * 8 6 5 10 10 N 1.34776 * 119.99947 * 161.17462 * 8 6 5 11 11 C 1.37098 * 119.99682 * 184.77087 * 10 8 6 12 12 H 1.07996 * 119.99814 * 136.92864 * 11 10 8 13 13 C 1.38946 * 120.00338 * 316.92845 * 11 10 8 14 14 N 1.31415 * 120.00393 * 160.11290 * 13 11 10 15 15 Si 1.86805 * 119.99910 * 340.11330 * 13 11 10 16 16 H 1.48501 * 109.46936 * 95.52377 * 15 13 11 17 17 H 1.48494 * 109.47221 * 215.52210 * 15 13 11 18 18 H 1.48495 * 109.47094 * 335.52580 * 15 13 11 19 19 C 1.46500 * 120.00043 * 4.77407 * 10 8 6 20 20 C 1.54267 * 110.02916 * 240.04820 * 19 10 8 21 21 C 1.54967 * 104.15887 * 217.13880 * 20 19 10 22 22 C 1.54886 * 102.77771 * 37.88542 * 21 20 19 23 23 C 1.53874 * 110.03215 * 122.83149 * 19 10 8 24 24 C 1.33865 * 118.73262 * 179.97438 * 2 1 3 25 25 O 1.21280 * 118.83194 * 1.90911 * 24 2 1 26 26 H 1.09001 * 109.46742 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46974 * 300.02651 * 1 2 3 28 28 H 1.09000 * 109.46925 * 60.02586 * 1 2 3 29 29 H 1.09008 * 109.38728 * 281.75453 * 3 2 1 30 30 H 1.08994 * 109.39571 * 41.47333 * 3 2 1 31 31 H 1.08991 * 109.60770 * 168.91599 * 4 3 2 32 32 H 1.09007 * 109.60079 * 289.40463 * 4 3 2 33 33 H 0.96996 * 119.99729 * 179.97438 * 14 13 11 34 34 H 1.08996 * 110.01872 * 1.44020 * 19 10 8 35 35 H 1.08997 * 110.48616 * 335.78182 * 20 19 10 36 36 H 1.08997 * 110.48386 * 98.43056 * 20 19 10 37 37 H 1.09007 * 110.71718 * 279.57458 * 21 20 19 38 38 H 1.08996 * 110.92514 * 156.30207 * 21 20 19 39 39 H 1.09003 * 110.48829 * 203.40528 * 22 21 20 40 40 H 1.09003 * 110.48570 * 80.76678 * 22 21 20 41 41 H 1.08998 * 110.02956 * 238.56871 * 23 19 10 42 42 H 1.09003 * 110.02848 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1673 1.2812 0.0000 4 6 3.6150 1.0823 0.4536 5 8 4.1835 -0.0025 -0.2893 6 6 3.6083 -1.2687 0.0491 7 1 3.9209 -1.5563 1.0529 8 6 4.0766 -2.3078 -0.9368 9 8 4.5302 -1.9660 -2.0085 10 7 3.9914 -3.6169 -0.6277 11 6 4.5063 -4.5578 -1.4816 12 1 5.0734 -5.3894 -1.0902 13 6 4.2986 -4.4415 -2.8505 14 7 5.0824 -5.0792 -3.6906 15 14 2.9050 -3.3784 -3.4967 16 1 3.4262 -2.0286 -3.8308 17 1 2.3304 -4.0027 -4.7154 18 1 1.8509 -3.2589 -2.4577 19 6 3.3486 -4.0343 0.6208 20 6 4.3527 -4.8095 1.4986 21 6 3.4989 -5.9206 2.1604 22 6 2.5291 -6.3299 1.0241 23 6 2.1893 -5.0003 0.3195 24 6 2.1086 -1.1738 0.0005 25 8 1.4586 -2.1972 -0.0344 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5142 0.8897 28 1 -0.3633 0.5134 -0.8902 29 1 2.1575 1.6992 -1.0067 30 1 1.6657 1.9688 0.6809 31 1 4.1852 1.9921 0.2664 32 1 3.6358 0.8473 1.5178 33 1 4.9371 -4.9983 -4.6462 34 1 2.9775 -3.1623 1.1592 35 1 5.1383 -5.2480 0.8832 36 1 4.7816 -4.1544 2.2569 37 1 2.9484 -5.5266 3.0148 38 1 4.1214 -6.7638 2.4595 39 1 1.6282 -6.7841 1.4366 40 1 3.0197 -7.0141 0.3318 41 1 1.2559 -4.5973 0.7124 42 1 2.1048 -5.1581 -0.7558 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900777981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:25 Heat of formation + Delta-G solvation = -78.438441 kcal Electronic energy + Delta-G solvation = -26647.233814 eV Core-core repulsion = 23014.794545 eV Total energy + Delta-G solvation = -3632.439269 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.88727 -38.85794 -37.65424 -36.81334 -35.24991 -33.47631 -31.86421 -30.34780 -29.02645 -28.00953 -27.05533 -26.23428 -23.93559 -23.77063 -20.47409 -20.16275 -19.31589 -18.91349 -17.95201 -17.22517 -16.66368 -16.24717 -15.74311 -15.40694 -14.89615 -14.69449 -14.21755 -14.13017 -13.99704 -13.59270 -13.38662 -12.98580 -12.76413 -12.66311 -12.45831 -12.16785 -12.05521 -11.87096 -11.51031 -11.27929 -10.88781 -10.63393 -10.54662 -10.51678 -10.37109 -10.08553 -9.99254 -9.80409 -9.70059 -9.15217 -8.77425 -8.44974 -8.41642 -7.48436 -6.11565 -3.87874 2.53587 2.74463 3.39900 3.52627 3.71098 3.76904 3.91810 4.39889 4.55436 4.67411 4.71352 4.91741 4.99646 5.15743 5.21795 5.22966 5.28179 5.32322 5.36687 5.43627 5.52002 5.60575 5.66342 5.79381 5.93542 6.12053 6.16119 6.26057 6.27356 6.32483 6.44066 6.48144 6.65683 6.84018 6.95544 7.01716 7.19225 7.30557 7.91509 8.06314 8.14154 8.84242 8.94991 9.50707 9.85442 10.92312 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.008439 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.504149 B = 3317.250160 C = 4133.076773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.613 5.613 3 C 0.081 3.919 4 C 0.039 3.961 5 O -0.338 6.338 6 C 0.062 3.938 7 H 0.106 0.894 8 C 0.461 3.539 9 O -0.522 6.522 10 N -0.435 5.435 11 C -0.339 4.339 12 H 0.100 0.900 13 C 0.095 3.905 14 N -0.864 5.864 15 Si 0.898 3.102 16 H -0.258 1.258 17 H -0.312 1.312 18 H -0.264 1.264 19 C 0.136 3.864 20 C -0.136 4.136 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.113 4.113 24 C 0.493 3.507 25 O -0.509 6.509 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.062 0.938 33 H 0.271 0.729 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.739 10.019 13.302 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.349 5.349 3 C -0.043 4.043 4 C -0.039 4.039 5 O -0.255 6.255 6 C -0.003 4.003 7 H 0.123 0.877 8 C 0.248 3.752 9 O -0.403 6.403 10 N -0.157 5.157 11 C -0.465 4.465 12 H 0.117 0.883 13 C -0.114 4.114 14 N -0.499 5.499 15 Si 0.729 3.271 16 H -0.185 1.185 17 H -0.242 1.242 18 H -0.188 1.188 19 C 0.032 3.968 20 C -0.175 4.175 21 C -0.157 4.157 22 C -0.159 4.159 23 C -0.151 4.151 24 C 0.279 3.721 25 O -0.383 6.383 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.625 9.591 12.420 17.447 hybrid contribution -0.973 0.762 -0.157 1.246 sum -8.597 10.353 12.263 18.207 Atomic orbital electron populations 1.21723 0.79232 1.04737 1.00976 1.47338 1.07378 1.05892 1.74323 1.22154 0.93680 0.85502 1.02926 1.23037 0.92594 0.92252 0.95987 1.88424 1.60447 1.13403 1.63216 1.22459 0.88767 0.87443 1.01616 0.87721 1.19219 0.84733 0.83063 0.88229 1.90550 1.47709 1.79318 1.22742 1.43571 1.49891 1.03135 1.19074 1.18670 1.33868 1.06970 0.86961 0.88263 1.25288 0.95674 0.94468 0.95964 1.69754 1.34795 1.42204 1.03108 0.86517 0.81329 0.81694 0.77559 1.18452 1.24250 1.18847 1.21769 0.92131 0.96772 0.86162 1.22791 0.99100 0.97344 0.98243 1.22418 0.97751 0.98096 0.97476 1.22326 0.98181 0.98153 0.97196 1.22217 0.96916 0.93676 1.02289 1.20736 0.90987 0.83699 0.76681 1.90783 1.66779 1.32975 1.47808 0.88975 0.92245 0.92352 0.90710 0.89741 0.86464 0.92016 0.91920 0.91254 0.89693 0.92744 0.92408 0.92181 0.92837 0.91340 0.92327 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.58 59.85 0.63 1.53 16 2 N -0.61 -9.02 3.23 -182.30 -0.59 -9.60 16 3 C 0.08 0.88 6.69 -4.25 -0.03 0.85 16 4 C 0.04 0.45 6.89 37.16 0.26 0.70 16 5 O -0.34 -6.23 10.10 -54.48 -0.55 -6.78 16 6 C 0.06 1.23 2.51 -29.20 -0.07 1.15 16 7 H 0.11 1.78 6.97 -51.93 -0.36 1.42 16 8 C 0.46 11.79 5.10 -10.98 -0.06 11.73 16 9 O -0.52 -15.56 11.76 -13.70 -0.16 -15.72 16 10 N -0.44 -10.90 2.08 -106.55 -0.22 -11.12 16 11 C -0.34 -9.69 8.13 -14.93 -0.12 -9.81 16 12 H 0.10 2.91 6.92 -52.49 -0.36 2.55 16 13 C 0.10 2.91 4.84 -17.47 -0.08 2.82 16 14 N -0.86 -27.06 13.96 55.50 0.77 -26.29 16 15 Si 0.90 25.83 24.78 -169.99 -4.21 21.62 16 16 H -0.26 -7.87 6.27 56.52 0.35 -7.52 16 17 H -0.31 -8.80 7.11 56.52 0.40 -8.40 16 18 H -0.26 -7.56 6.91 56.52 0.39 -7.17 16 19 C 0.14 2.77 2.08 -66.81 -0.14 2.63 16 20 C -0.14 -2.41 6.42 -25.03 -0.16 -2.57 16 21 C -0.12 -1.80 6.91 -24.70 -0.17 -1.97 16 22 C -0.12 -2.03 6.83 -25.07 -0.17 -2.20 16 23 C -0.11 -2.26 5.52 -25.61 -0.14 -2.40 16 24 C 0.49 9.30 6.85 -11.56 -0.08 9.22 16 25 O -0.51 -10.76 11.74 5.56 0.07 -10.70 16 26 H 0.09 1.28 6.71 -51.93 -0.35 0.93 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.08 0.60 8.13 -51.93 -0.42 0.17 16 31 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.59 8.09 -51.92 -0.42 0.17 16 33 H 0.27 8.07 8.31 -40.82 -0.34 7.73 16 34 H 0.07 1.32 4.44 -51.93 -0.23 1.09 16 35 H 0.08 1.70 6.47 -51.93 -0.34 1.37 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.12 7.63 -51.93 -0.40 0.72 16 42 H 0.08 1.88 7.26 -51.93 -0.38 1.50 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -37.29 321.51 -6.64 -43.93 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.25 Total: -1.86 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -0.34 Total: 11.69 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.04 Total: -47.02 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.65 Total: -33.20 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -4.21 Total: 21.62 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -37.29 -6.64 -43.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900777981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.510 kcal (2) G-P(sol) polarization free energy of solvation -37.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds