Wall clock time and date at job start Tue Mar 31 2020 08:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99822 * 2 1 4 4 C 1.50701 * 109.46964 * 179.97438 * 3 2 1 5 5 C 1.35126 * 125.61490 * 89.99797 * 4 3 2 6 6 C 1.40362 * 107.11443 * 180.02562 * 5 4 3 7 7 C 1.36546 * 106.70854 * 0.02562 * 6 5 4 8 8 C 1.46658 * 125.98652 * 179.97438 * 7 6 5 9 9 O 1.21696 * 120.00328 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99683 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99830 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46958 * 35.00331 * 11 10 8 13 13 C 1.53000 * 109.46861 * 274.99901 * 11 10 8 14 14 C 1.52997 * 109.47004 * 154.99864 * 11 10 8 15 15 H 1.09001 * 109.47502 * 295.00420 * 14 11 10 16 16 C 1.53006 * 109.47127 * 55.00263 * 14 11 10 17 17 N 1.46500 * 109.47007 * 175.00044 * 14 11 10 18 18 C 1.36944 * 120.00017 * 155.00515 * 17 14 11 19 19 H 1.07997 * 119.99813 * 359.97438 * 18 17 14 20 20 C 1.38806 * 119.99784 * 180.02562 * 18 17 14 21 21 N 1.31621 * 120.00406 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99911 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46788 * 59.99683 * 22 20 18 24 24 H 1.48496 * 109.47411 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47141 * 300.00107 * 22 20 18 26 26 O 1.33929 * 125.61600 * 270.29181 * 4 3 2 27 27 H 1.09002 * 109.46813 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47226 * 300.00130 * 1 2 3 29 29 H 1.09003 * 109.46782 * 60.00568 * 1 2 3 30 30 H 1.09005 * 109.47221 * 59.99618 * 3 2 1 31 31 H 1.08992 * 109.46897 * 299.99565 * 3 2 1 32 32 H 1.07996 * 126.44419 * 0.02562 * 5 4 3 33 33 H 1.07997 * 126.64640 * 179.97438 * 6 5 4 34 34 H 0.97001 * 120.00108 * 359.97438 * 10 8 7 35 35 H 1.08994 * 109.47281 * 299.99657 * 13 11 10 36 36 H 1.09004 * 109.47031 * 60.00509 * 13 11 10 37 37 H 1.09002 * 109.46818 * 180.02562 * 13 11 10 38 38 H 1.09001 * 109.47002 * 299.99574 * 16 14 11 39 39 H 1.08993 * 109.46955 * 60.00011 * 16 14 11 40 40 H 1.09000 * 109.47050 * 179.97438 * 16 14 11 41 41 H 0.96995 * 120.00293 * 334.99551 * 17 14 11 42 42 H 0.96997 * 120.00066 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2974 1.1241 -1.0975 6 6 5.6241 1.0185 -0.6516 7 6 5.5810 1.0213 0.7132 8 6 6.7360 0.9286 1.6121 9 8 7.8592 0.8386 1.1524 10 7 6.5535 0.9430 2.9474 11 6 7.7073 0.8498 3.8454 12 1 8.5552 1.3730 3.4031 13 6 8.0703 -0.6212 4.0583 14 6 7.3591 1.4892 5.1911 15 1 7.1870 2.5566 5.0525 16 6 6.0942 0.8374 5.7534 17 7 8.4682 1.2909 6.1274 18 6 8.6447 2.1573 7.1732 19 1 7.9665 2.9870 7.3073 20 6 9.6959 1.9697 8.0600 21 7 10.5228 0.9588 7.8963 22 14 9.9371 3.1520 9.4861 23 1 8.7304 3.1364 10.3514 24 1 11.1205 2.7349 10.2802 25 1 10.1517 4.5241 8.9606 26 8 4.2892 1.1196 1.0897 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6886 1.8465 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.9663 1.1506 -2.1251 33 1 6.5078 0.9479 -1.2684 34 1 5.6583 1.0151 3.3138 35 1 7.2225 -1.1443 4.5007 36 1 8.3184 -1.0767 3.0996 37 1 8.9284 -0.6906 4.7268 38 1 5.2690 0.9849 5.0567 39 1 6.2664 -0.2299 5.8920 40 1 5.8464 1.2926 6.7123 41 1 9.0775 0.5458 6.0069 42 1 11.2571 0.8275 8.5163 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755243994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:13 Heat of formation + Delta-G solvation = -73.628405 kcal Electronic energy + Delta-G solvation = -23602.287126 eV Core-core repulsion = 19970.056436 eV Total energy + Delta-G solvation = -3632.230690 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.80493 -40.91914 -38.82665 -38.48619 -35.71940 -34.28298 -33.63733 -32.35847 -31.00016 -29.84847 -28.33303 -26.63241 -26.17738 -25.08102 -23.31784 -22.70180 -21.35291 -20.77104 -19.71347 -19.24290 -17.92323 -17.42809 -17.09713 -16.89510 -16.63123 -16.59882 -16.02993 -15.94032 -15.40511 -15.20804 -14.86505 -14.69173 -14.17313 -14.03445 -13.96703 -13.58908 -13.51560 -13.13902 -13.01679 -12.88949 -12.78130 -12.66938 -12.35431 -12.18444 -12.08451 -11.70449 -11.66027 -11.43639 -11.10928 -10.95274 -10.73113 -10.33034 -9.70008 -9.04528 -7.93500 -5.22863 -0.14222 1.16717 1.44034 1.48654 1.51285 1.57231 2.03482 2.03862 2.58120 2.96593 3.39797 3.54978 3.76724 3.86558 3.87131 3.94987 4.03337 4.20608 4.28302 4.29945 4.51599 4.55809 4.56711 4.61245 4.65498 4.74245 4.82037 4.84378 4.91533 4.92420 4.97637 5.16755 5.19823 5.31628 5.37631 5.52352 5.58734 5.76211 6.09803 6.28099 6.37432 6.94289 7.34966 8.07837 8.32051 9.29758 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.023920 B = 0.002852 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.263650 B = 9815.418954 C =10454.900199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.138 3.862 4 C 0.008 3.992 5 C -0.191 4.191 6 C -0.123 4.123 7 C -0.090 4.090 8 C 0.599 3.401 9 O -0.557 6.557 10 N -0.696 5.696 11 C 0.148 3.852 12 H 0.066 0.934 13 C -0.151 4.151 14 C 0.167 3.833 15 H 0.049 0.951 16 C -0.159 4.159 17 N -0.732 5.732 18 C -0.241 4.241 19 H 0.077 0.923 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.973 3.027 23 H -0.277 1.277 24 H -0.297 1.297 25 H -0.280 1.280 26 O -0.165 6.165 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.190 0.810 33 H 0.168 0.832 34 H 0.414 0.586 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.377 0.623 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.811 0.156 -19.307 29.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C 0.062 3.938 4 C -0.045 4.045 5 C -0.210 4.210 6 C -0.143 4.143 7 C -0.142 4.142 8 C 0.387 3.613 9 O -0.437 6.437 10 N -0.348 5.348 11 C 0.042 3.958 12 H 0.085 0.915 13 C -0.210 4.210 14 C 0.058 3.942 15 H 0.067 0.933 16 C -0.219 4.219 17 N -0.375 5.375 18 C -0.372 4.372 19 H 0.095 0.905 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.802 3.198 23 H -0.203 1.203 24 H -0.224 1.224 25 H -0.206 1.206 26 O -0.061 6.061 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.207 0.793 33 H 0.186 0.814 34 H 0.252 0.748 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.211 0.789 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -22.028 0.085 -19.157 29.194 hybrid contribution 0.454 0.375 1.010 1.169 sum -21.575 0.460 -18.147 28.196 Atomic orbital electron populations 1.23001 0.78132 1.04171 1.01698 1.87941 1.22368 1.27411 1.95833 1.21011 0.81905 0.85938 1.04920 1.22997 0.94211 1.03290 0.83960 1.21976 0.91105 1.06691 1.01207 1.22259 0.99981 0.99619 0.92467 1.21882 0.82054 1.15341 0.94929 1.16805 0.86145 0.76417 0.81969 1.90865 1.23665 1.52451 1.76751 1.45978 1.11348 1.72699 1.04777 1.21046 0.87912 0.97183 0.89619 0.91536 1.22050 1.02258 0.95283 1.01370 1.20498 0.88979 0.97328 0.87421 0.93335 1.22371 0.97474 1.01118 1.00921 1.42620 1.32127 1.33079 1.29669 1.19571 1.08925 1.05835 1.02902 0.90469 1.25549 0.98251 1.00411 1.02489 1.69808 1.19056 1.32926 1.40146 0.85217 0.76871 0.78448 0.79238 1.20270 1.22370 1.20574 1.83983 1.15928 1.70365 1.35849 0.88751 0.92742 0.91743 0.89860 0.86240 0.79295 0.81418 0.74779 0.90980 0.92747 0.92285 0.91131 0.92841 0.93495 0.78852 0.94023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.28 10.69 -148.98 -1.59 -7.88 16 3 C 0.14 1.56 6.46 71.24 0.46 2.02 16 4 C 0.01 0.14 6.94 24.97 0.17 0.31 16 5 C -0.19 -3.25 10.77 22.07 0.24 -3.01 16 6 C -0.12 -2.77 10.62 22.39 0.24 -2.54 16 7 C -0.09 -2.41 7.13 24.07 0.17 -2.23 16 8 C 0.60 19.24 7.75 86.44 0.67 19.91 16 9 O -0.56 -21.55 16.53 -4.34 -0.07 -21.62 16 10 N -0.70 -20.88 4.98 -446.51 -2.23 -23.11 16 11 C 0.15 5.28 2.62 44.99 0.12 5.40 16 12 H 0.07 2.74 7.58 -2.38 -0.02 2.72 16 13 C -0.15 -5.31 9.00 71.98 0.65 -4.66 16 14 C 0.17 6.49 2.93 44.99 0.13 6.63 16 15 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 16 C -0.16 -5.25 9.01 71.98 0.65 -4.60 16 17 N -0.73 -36.53 5.03 -322.93 -1.63 -38.15 16 18 C -0.24 -13.23 9.93 84.03 0.83 -12.39 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 20 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 21 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 22 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 O -0.16 -3.90 10.40 -4.99 -0.05 -3.95 16 27 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.12 0.55 8.14 -2.39 -0.02 0.54 16 32 H 0.19 1.87 8.06 -2.91 -0.02 1.84 16 33 H 0.17 3.51 8.06 -2.91 -0.02 3.48 16 34 H 0.41 10.49 6.33 -92.71 -0.59 9.91 16 35 H 0.07 2.29 6.56 -2.39 -0.02 2.27 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 2.32 6.29 -2.39 -0.02 2.31 16 38 H 0.07 1.79 6.29 -2.39 -0.02 1.77 16 39 H 0.05 1.78 6.56 -2.39 -0.02 1.77 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.38 20.14 5.77 -92.71 -0.54 19.60 16 42 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -71.75 353.96 2.71 -69.04 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.08 Total: 34.15 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 6.05 Total: 2.46 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -3.57 Total: -120.35 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.72 Total: -33.45 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -71.75 2.71 -69.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755243994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.588 kcal (2) G-P(sol) polarization free energy of solvation -71.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds