Wall clock time and date at job start Tue Mar 31 2020 08:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 114.00009 * 2 1 4 4 H 1.08999 * 109.47019 * 30.00537 * 3 2 1 5 5 C 1.52995 * 109.47084 * 269.99902 * 3 2 1 6 6 C 1.50703 * 109.46758 * 150.00135 * 3 2 1 7 7 C 1.38343 * 119.93782 * 39.97909 * 6 3 2 8 8 C 1.38301 * 120.24329 * 179.74084 * 7 6 3 9 9 C 1.38043 * 120.11839 * 0.56387 * 8 7 6 10 10 C 1.39321 * 119.87797 * 359.43864 * 9 8 7 11 11 C 1.48394 * 120.12149 * 180.25836 * 10 9 8 12 12 C 1.39336 * 120.11635 * 179.71949 * 11 10 9 13 13 C 1.38021 * 119.87118 * 179.72396 * 12 11 10 14 14 C 1.38317 * 120.12198 * 0.57760 * 13 12 11 15 15 C 1.50704 * 119.87813 * 179.71941 * 14 13 12 16 16 C 1.50700 * 109.47097 * 269.98196 * 15 14 13 17 17 H 1.08006 * 120.00159 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99937 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00021 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99990 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47180 * 90.00112 * 20 18 16 22 22 H 1.48506 * 109.47133 * 209.99796 * 20 18 16 23 23 H 1.48500 * 109.47305 * 329.99692 * 20 18 16 24 24 C 1.38326 * 120.24617 * 359.70130 * 14 13 12 25 25 C 1.38016 * 120.11818 * 0.02562 * 24 14 13 26 26 C 1.37993 * 119.94009 * 220.00377 * 6 3 2 27 27 H 1.08996 * 109.46840 * 299.99676 * 1 2 3 28 28 H 1.08998 * 109.47013 * 59.99263 * 1 2 3 29 29 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47710 * 300.00212 * 5 3 2 31 31 H 1.09004 * 109.47327 * 60.00495 * 5 3 2 32 32 H 1.09001 * 109.47011 * 179.97438 * 5 3 2 33 33 H 1.08001 * 119.88169 * 0.04421 * 7 6 3 34 34 H 1.08004 * 119.94476 * 180.27776 * 8 7 6 35 35 H 1.08002 * 120.06469 * 179.72168 * 9 8 7 36 36 H 1.08000 * 120.06451 * 0.02562 * 12 11 10 37 37 H 1.08005 * 119.93705 * 180.30406 * 13 12 11 38 38 H 1.08999 * 109.47310 * 29.98144 * 15 14 13 39 39 H 1.09002 * 109.46904 * 149.98464 * 15 14 13 40 40 H 0.97003 * 120.00169 * 180.02562 * 19 18 16 41 41 H 1.07993 * 119.94233 * 180.02562 * 24 14 13 42 42 H 1.07995 * 120.06239 * 180.02562 * 25 24 14 43 43 H 1.08008 * 120.05969 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2178 1.7714 -1.4425 6 6 3.3387 1.2638 0.7104 7 6 4.1891 0.1890 0.5219 8 6 5.4120 0.1468 1.1665 9 6 5.7854 1.1727 2.0112 10 6 4.9330 2.2576 2.2048 11 6 5.3315 3.3661 3.1072 12 6 4.4814 4.4538 3.2962 13 6 4.8547 5.4793 4.1411 14 6 6.0752 5.4344 4.7903 15 6 6.4800 6.5602 5.7068 16 6 7.2222 7.6079 4.9179 17 1 7.3850 7.4720 3.8589 18 6 7.6945 8.7396 5.5483 19 7 7.4976 8.9044 6.8381 20 14 8.6152 10.0380 4.5706 21 1 7.6509 11.0361 4.0424 22 1 9.5977 10.7176 5.4526 23 1 9.3288 9.3924 3.4396 24 6 6.9255 4.3597 4.6019 25 6 6.5600 3.3261 3.7636 26 6 3.7045 2.2976 1.5482 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 2.8830 1.0775 -1.9564 31 1 1.2569 1.8015 -1.9563 32 1 2.6607 2.7673 -1.4424 33 1 3.8991 -0.6178 -0.1349 34 1 6.0740 -0.6925 1.0123 35 1 6.7387 1.1367 2.5177 36 1 3.5302 4.4920 2.7862 37 1 4.1944 6.3206 4.2921 38 1 5.5897 7.0039 6.1524 39 1 7.1262 6.1729 6.4945 40 1 7.8295 9.7007 7.2815 41 1 7.8771 4.3295 5.1116 42 1 7.2243 2.4873 3.6175 43 1 3.0398 3.1362 1.6946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242024708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:27 Heat of formation + Delta-G solvation = -14.505683 kcal Electronic energy + Delta-G solvation = -22137.280109 eV Core-core repulsion = 18918.462435 eV Total energy + Delta-G solvation = -3218.817674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.95271 -38.68482 -37.61321 -33.89488 -32.91643 -32.08295 -30.59209 -29.88038 -29.19413 -27.06846 -26.60944 -24.04511 -23.59984 -22.55087 -21.51500 -20.72927 -19.74632 -17.33457 -16.79141 -16.34318 -15.94077 -15.46772 -15.34826 -14.98298 -14.75790 -14.21224 -13.94090 -13.73898 -13.50683 -13.25913 -12.95867 -12.80288 -12.70065 -12.62478 -12.34438 -12.02520 -11.75922 -11.50999 -11.32558 -11.27413 -10.99752 -10.91852 -10.67455 -10.53917 -10.17113 -9.96034 -9.69096 -9.51939 -9.01137 -8.81893 -8.45696 -8.35627 -7.41465 -6.07130 -4.11465 1.00134 1.34125 2.01741 2.33908 3.28520 3.34862 3.39110 3.44689 3.83026 4.38228 4.50401 4.58602 4.73784 4.84029 4.91435 4.94734 5.03009 5.10093 5.13187 5.27031 5.32361 5.35817 5.40764 5.47148 5.48741 5.53975 5.55183 5.88084 5.94652 5.95421 5.96864 6.10903 6.19987 6.41097 6.46916 6.53257 6.59160 6.69060 6.93959 6.98996 7.10460 7.13648 7.14629 7.46333 7.66368 7.80150 7.88371 8.27843 8.93788 9.52561 11.02487 Molecular weight = 296.15amu Principal moments of inertia in cm(-1) A = 0.024969 B = 0.002688 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.133966 B =10412.546879 C =10743.625164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.128 3.872 4 H 0.069 0.931 5 C -0.169 4.169 6 C -0.087 4.087 7 C -0.104 4.104 8 C -0.119 4.119 9 C -0.117 4.117 10 C -0.019 4.019 11 C -0.089 4.089 12 C -0.107 4.107 13 C -0.125 4.125 14 C -0.023 4.023 15 C 0.045 3.955 16 C -0.512 4.512 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.125 4.125 25 C -0.106 4.106 26 C -0.111 4.111 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.262 0.738 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.882 -17.307 -13.237 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.070 3.930 4 H 0.087 0.913 5 C -0.226 4.226 6 C -0.087 4.087 7 C -0.122 4.122 8 C -0.137 4.137 9 C -0.134 4.134 10 C -0.019 4.019 11 C -0.089 4.089 12 C -0.125 4.125 13 C -0.143 4.143 14 C -0.024 4.024 15 C 0.008 3.992 16 C -0.550 4.550 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.143 4.143 25 C -0.124 4.124 26 C -0.129 4.129 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.735 -17.348 -13.091 24.240 hybrid contribution 0.331 1.052 -0.481 1.203 sum -10.404 -16.296 -13.573 23.623 Atomic orbital electron populations 1.22790 0.81100 1.02736 0.99982 1.87934 1.19516 1.27455 1.95116 1.20889 0.91895 0.84880 0.95322 0.91344 1.22261 1.02283 1.02198 0.95888 1.19545 0.95311 0.95609 0.98235 1.20898 0.93575 0.97771 0.99999 1.21062 0.96602 0.98638 0.97379 1.21284 0.99709 0.93684 0.98770 1.18803 0.93666 0.93808 0.95667 1.18508 0.95870 0.94715 0.99839 1.21083 0.98757 0.93854 0.98791 1.21036 0.97336 0.98220 0.97712 1.20813 0.91917 0.94808 0.94815 1.18404 0.97255 0.90187 0.93326 1.21042 1.35539 1.03274 0.95165 0.92446 1.25013 0.96173 0.98201 0.94942 1.69954 1.46342 1.28079 1.08888 0.86529 0.79672 0.81579 0.79896 1.20565 1.21125 1.19779 1.21045 0.99927 0.93892 0.99422 1.21096 0.95468 0.98636 0.97190 1.21003 0.96660 0.98449 0.96742 0.93924 0.94095 0.89634 0.91554 0.92298 0.91174 0.85986 0.86076 0.85723 0.86852 0.86180 0.95223 0.95199 0.92797 0.86145 0.86707 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.31 16 2 O -0.38 -3.94 9.66 -35.23 -0.34 -4.28 16 3 C 0.13 1.26 2.92 -27.88 -0.08 1.18 16 4 H 0.07 0.61 7.64 -51.93 -0.40 0.22 16 5 C -0.17 -1.44 9.50 37.16 0.35 -1.09 16 6 C -0.09 -1.03 4.97 -104.67 -0.52 -1.55 16 7 C -0.10 -1.21 9.35 -39.52 -0.37 -1.58 16 8 C -0.12 -1.36 10.03 -39.63 -0.40 -1.75 16 9 C -0.12 -1.50 9.43 -39.25 -0.37 -1.87 16 10 C -0.02 -0.28 5.88 -104.90 -0.62 -0.90 16 11 C -0.09 -1.47 5.88 -104.90 -0.62 -2.08 16 12 C -0.11 -1.79 9.43 -39.25 -0.37 -2.16 16 13 C -0.13 -2.41 9.68 -39.63 -0.38 -2.80 16 14 C -0.02 -0.51 5.07 -104.56 -0.53 -1.04 16 15 C 0.05 1.15 5.10 -29.03 -0.15 1.00 16 16 C -0.51 -14.24 9.09 -34.44 -0.31 -14.56 16 17 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 20 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.12 -2.42 9.68 -39.63 -0.38 -2.80 16 25 C -0.11 -1.78 9.43 -39.25 -0.37 -2.15 16 26 C -0.11 -1.43 9.05 -39.25 -0.36 -1.79 16 27 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 28 H 0.04 0.24 7.87 -51.93 -0.41 -0.17 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.42 7.87 -51.93 -0.41 0.01 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 1.28 7.77 -52.49 -0.41 0.88 16 34 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 35 H 0.12 1.44 6.21 -52.49 -0.33 1.12 16 36 H 0.11 1.58 6.21 -52.49 -0.33 1.25 16 37 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 38 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.12 1.61 6.21 -52.49 -0.33 1.28 16 43 H 0.12 1.44 6.19 -52.48 -0.32 1.11 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -30.53 359.44 -9.95 -40.48 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.26 Total: 0.53 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: -4.48 Total: -33.08 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.50 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.34 Total: -4.28 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.53 -9.95 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242024708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.975 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds