Wall clock time and date at job start Tue Mar 31 2020 08:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 114.00009 * 2 1 4 4 H 1.08999 * 109.47019 * 30.00537 * 3 2 1 5 5 C 1.52995 * 109.47084 * 269.99902 * 3 2 1 6 6 C 1.50703 * 109.46758 * 150.00135 * 3 2 1 7 7 C 1.38343 * 119.93782 * 39.97909 * 6 3 2 8 8 C 1.38301 * 120.24329 * 179.74084 * 7 6 3 9 9 C 1.38043 * 120.11839 * 0.56387 * 8 7 6 10 10 C 1.39321 * 119.87797 * 359.43864 * 9 8 7 11 11 C 1.48394 * 120.12149 * 180.25836 * 10 9 8 12 12 C 1.39336 * 120.11635 * 179.71949 * 11 10 9 13 13 C 1.38021 * 119.87118 * 179.72396 * 12 11 10 14 14 C 1.38317 * 120.12198 * 0.57760 * 13 12 11 15 15 C 1.50704 * 119.87813 * 179.71941 * 14 13 12 16 16 C 1.50700 * 109.47097 * 269.98196 * 15 14 13 17 17 H 1.08006 * 120.00159 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99937 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00021 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99990 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47180 * 90.00112 * 20 18 16 22 22 H 1.48506 * 109.47133 * 209.99796 * 20 18 16 23 23 H 1.48500 * 109.47305 * 329.99692 * 20 18 16 24 24 C 1.38326 * 120.24617 * 359.70130 * 14 13 12 25 25 C 1.38016 * 120.11818 * 0.02562 * 24 14 13 26 26 C 1.37993 * 119.94009 * 220.00377 * 6 3 2 27 27 H 1.08996 * 109.46840 * 299.99676 * 1 2 3 28 28 H 1.08998 * 109.47013 * 59.99263 * 1 2 3 29 29 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47710 * 300.00212 * 5 3 2 31 31 H 1.09004 * 109.47327 * 60.00495 * 5 3 2 32 32 H 1.09001 * 109.47011 * 179.97438 * 5 3 2 33 33 H 1.08001 * 119.88169 * 0.04421 * 7 6 3 34 34 H 1.08004 * 119.94476 * 180.27776 * 8 7 6 35 35 H 1.08002 * 120.06469 * 179.72168 * 9 8 7 36 36 H 1.08000 * 120.06451 * 0.02562 * 12 11 10 37 37 H 1.08005 * 119.93705 * 180.30406 * 13 12 11 38 38 H 1.08999 * 109.47310 * 29.98144 * 15 14 13 39 39 H 1.09002 * 109.46904 * 149.98464 * 15 14 13 40 40 H 0.97003 * 120.00169 * 180.02562 * 19 18 16 41 41 H 1.07993 * 119.94233 * 180.02562 * 24 14 13 42 42 H 1.07995 * 120.06239 * 180.02562 * 25 24 14 43 43 H 1.08008 * 120.05969 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2178 1.7714 -1.4425 6 6 3.3387 1.2638 0.7104 7 6 4.1891 0.1890 0.5219 8 6 5.4120 0.1468 1.1665 9 6 5.7854 1.1727 2.0112 10 6 4.9330 2.2576 2.2048 11 6 5.3315 3.3661 3.1072 12 6 4.4814 4.4538 3.2962 13 6 4.8547 5.4793 4.1411 14 6 6.0752 5.4344 4.7903 15 6 6.4800 6.5602 5.7068 16 6 7.2222 7.6079 4.9179 17 1 7.3850 7.4720 3.8589 18 6 7.6945 8.7396 5.5483 19 7 7.4976 8.9044 6.8381 20 14 8.6152 10.0380 4.5706 21 1 7.6509 11.0361 4.0424 22 1 9.5977 10.7176 5.4526 23 1 9.3288 9.3924 3.4396 24 6 6.9255 4.3597 4.6019 25 6 6.5600 3.3261 3.7636 26 6 3.7045 2.2976 1.5482 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 2.8830 1.0775 -1.9564 31 1 1.2569 1.8015 -1.9563 32 1 2.6607 2.7673 -1.4424 33 1 3.8991 -0.6178 -0.1349 34 1 6.0740 -0.6925 1.0123 35 1 6.7387 1.1367 2.5177 36 1 3.5302 4.4920 2.7862 37 1 4.1944 6.3206 4.2921 38 1 5.5897 7.0039 6.1524 39 1 7.1262 6.1729 6.4945 40 1 7.8295 9.7007 7.2815 41 1 7.8771 4.3295 5.1116 42 1 7.2243 2.4873 3.6175 43 1 3.0398 3.1362 1.6946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242024708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:26 Heat of formation + Delta-G solvation = -28.462168 kcal Electronic energy + Delta-G solvation = -22137.885308 eV Core-core repulsion = 18918.462435 eV Total energy + Delta-G solvation = -3219.422872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.97668 -39.82988 -38.53791 -35.62733 -34.15430 -33.36234 -31.93150 -31.29006 -30.13675 -28.35915 -27.55339 -25.47934 -24.77611 -23.76995 -22.82788 -21.91762 -20.94982 -18.55748 -18.30624 -17.52817 -16.94334 -16.76969 -16.23873 -16.15857 -16.10266 -15.63197 -15.04380 -14.83199 -14.60019 -14.38089 -14.29806 -14.07693 -13.88059 -13.59561 -13.38302 -13.27092 -13.14963 -12.87829 -12.67542 -12.58590 -12.44207 -12.24079 -12.00315 -11.77866 -11.59550 -11.44108 -11.39451 -10.64530 -10.62074 -10.31351 -9.78147 -9.72287 -8.77386 -8.20271 -6.35286 -0.14767 0.42870 0.58692 1.07552 1.39053 1.39754 1.51491 2.38302 2.67563 2.86688 3.08892 3.21083 3.69423 3.73951 3.91654 4.03232 4.08818 4.24725 4.25498 4.30199 4.41995 4.44938 4.50282 4.53744 4.59201 4.66114 4.70842 4.81048 4.89009 4.89573 4.98986 5.04139 5.15141 5.20333 5.25864 5.33412 5.35751 5.41868 5.52223 5.58992 5.64153 5.73842 5.84841 6.05920 6.06075 6.10564 6.23798 6.27747 6.77237 7.33325 8.87529 Molecular weight = 296.15amu Principal moments of inertia in cm(-1) A = 0.024969 B = 0.002688 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.133966 B =10412.546879 C =10743.625164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.400 6.400 3 C 0.127 3.873 4 H 0.077 0.923 5 C -0.165 4.165 6 C -0.093 4.093 7 C -0.103 4.103 8 C -0.119 4.119 9 C -0.121 4.121 10 C -0.046 4.046 11 C -0.076 4.076 12 C -0.105 4.105 13 C -0.134 4.134 14 C -0.060 4.060 15 C 0.055 3.945 16 C -0.528 4.528 17 H 0.053 0.947 18 C 0.004 3.996 19 N -0.930 5.930 20 Si 0.966 3.034 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.134 4.134 25 C -0.104 4.104 26 C -0.114 4.114 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.117 0.883 38 H 0.004 0.996 39 H 0.004 0.996 40 H 0.266 0.734 41 H 0.117 0.883 42 H 0.145 0.855 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.471 -18.888 -15.849 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C 0.069 3.931 4 H 0.095 0.905 5 C -0.223 4.223 6 C -0.093 4.093 7 C -0.121 4.121 8 C -0.136 4.136 9 C -0.139 4.139 10 C -0.046 4.046 11 C -0.076 4.076 12 C -0.123 4.123 13 C -0.152 4.152 14 C -0.060 4.060 15 C 0.018 3.982 16 C -0.566 4.566 17 H 0.072 0.928 18 C -0.194 4.194 19 N -0.570 5.570 20 Si 0.790 3.210 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.152 4.152 25 C -0.122 4.122 26 C -0.132 4.132 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.151 0.849 34 H 0.165 0.835 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.135 0.865 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.075 0.925 41 H 0.135 0.865 42 H 0.163 0.837 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.335 -18.940 -15.709 27.092 hybrid contribution 0.407 1.344 0.246 1.426 sum -10.928 -17.596 -15.463 25.848 Atomic orbital electron populations 1.22973 0.79597 1.03837 1.00772 1.87893 1.21205 1.27631 1.95266 1.20925 0.91132 0.85131 0.95899 0.90534 1.22229 1.03007 1.01927 0.95112 1.19807 0.96340 0.95254 0.97897 1.21175 0.93525 0.97847 0.99596 1.21360 0.96887 0.98922 0.96459 1.21490 0.99945 0.93523 0.98967 1.18782 0.95045 0.93980 0.96769 1.18827 0.95153 0.94874 0.98782 1.21334 1.00022 0.92965 0.97971 1.21055 0.96577 0.99209 0.98339 1.20507 0.94045 0.94935 0.96508 1.18131 0.95372 0.91338 0.93365 1.21355 1.35841 1.04245 0.95170 0.92834 1.25931 0.97006 1.00494 0.95966 1.70077 1.47400 1.28938 1.10546 0.85437 0.78443 0.78654 0.78484 1.19616 1.20393 1.19076 1.21067 0.99636 0.94233 1.00310 1.21347 0.96222 0.98528 0.96105 1.21147 0.96315 0.99123 0.96615 0.93611 0.92818 0.88482 0.91989 0.90881 0.91195 0.84868 0.83473 0.84656 0.83871 0.86473 0.97764 0.97768 0.92518 0.86481 0.83705 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.51 16 2 O -0.40 -7.27 9.66 -148.98 -1.44 -8.71 16 3 C 0.13 2.18 2.92 29.85 0.09 2.27 16 4 H 0.08 1.17 7.64 -2.39 -0.02 1.15 16 5 C -0.17 -2.40 9.50 71.98 0.68 -1.71 16 6 C -0.09 -1.96 4.97 -19.90 -0.10 -2.06 16 7 C -0.10 -2.10 9.35 22.31 0.21 -1.89 16 8 C -0.12 -2.33 10.03 22.24 0.22 -2.10 16 9 C -0.12 -2.79 9.43 22.48 0.21 -2.58 16 10 C -0.05 -1.21 5.88 -20.04 -0.12 -1.33 16 11 C -0.08 -2.39 5.88 -20.04 -0.12 -2.51 16 12 C -0.11 -3.42 9.43 22.48 0.21 -3.21 16 13 C -0.13 -5.28 9.68 22.24 0.22 -5.07 16 14 C -0.06 -2.69 5.07 -19.82 -0.10 -2.79 16 15 C 0.05 2.98 5.10 29.10 0.15 3.13 16 16 C -0.53 -30.50 9.09 25.60 0.23 -30.27 16 17 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 18 C 0.00 0.24 5.46 84.66 0.46 0.70 16 19 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 20 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C -0.13 -5.32 9.68 22.24 0.22 -5.11 16 25 C -0.10 -3.40 9.43 22.48 0.21 -3.19 16 26 C -0.11 -2.68 9.05 22.48 0.20 -2.48 16 27 H 0.05 0.51 8.08 -2.39 -0.02 0.49 16 28 H 0.05 0.49 7.87 -2.39 -0.02 0.47 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.84 7.87 -2.39 -0.02 0.82 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.13 2.40 7.77 -2.91 -0.02 2.37 16 34 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.14 2.73 6.21 -2.91 -0.02 2.71 16 36 H 0.14 3.70 6.21 -2.91 -0.02 3.68 16 37 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.00 0.23 8.08 -2.39 -0.02 0.21 16 39 H 0.00 0.23 8.08 -2.39 -0.02 0.21 16 40 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.15 3.75 6.21 -2.91 -0.02 3.73 16 43 H 0.13 2.76 6.19 -2.91 -0.02 2.74 16 Total: -1.00 -67.30 359.44 5.97 -61.33 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.99 Total: 15.56 kcal Atomic # 6 Polarization: -62.80 SS G_CDS: 4.11 Total: -58.70 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.28 Total: -56.04 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -1.44 Total: -8.71 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -67.30 5.97 -61.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242024708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.866 kcal (2) G-P(sol) polarization free energy of solvation -67.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds