Wall clock time and date at job start Tue Mar 31 2020 07:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00007 * 2 1 4 4 H 1.48502 * 109.46884 * 274.98843 * 3 2 1 5 5 H 1.48495 * 109.47105 * 34.98856 * 3 2 1 6 6 H 1.48497 * 109.46965 * 154.98880 * 3 2 1 7 7 C 1.38813 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00130 * 199.43869 * 7 2 1 9 9 N 1.36942 * 119.99873 * 19.44132 * 7 2 1 10 10 C 1.47084 * 120.87757 * 206.29543 * 9 7 2 11 11 C 1.53245 * 108.51953 * 231.20505 * 10 9 7 12 12 N 1.46904 * 109.34022 * 306.17515 * 11 10 9 13 13 C 1.46904 * 110.99896 * 187.25121 * 12 11 10 14 14 C 1.50694 * 109.46934 * 164.60801 * 13 12 11 15 15 C 1.36131 * 120.16979 * 105.71617 * 14 13 12 16 16 C 1.39329 * 120.98784 * 179.97438 * 15 14 13 17 17 C 1.36126 * 120.99236 * 0.02562 * 16 15 14 18 18 C 1.40502 * 119.65248 * 359.97438 * 17 16 15 19 19 C 1.40543 * 121.28982 * 180.02562 * 18 17 16 20 20 C 1.36089 * 119.64958 * 179.97438 * 19 18 17 21 21 C 1.39377 * 120.99810 * 0.02562 * 20 19 18 22 22 C 1.36088 * 120.99030 * 359.95860 * 21 20 19 23 23 C 1.40498 * 120.17638 * 285.68701 * 14 13 12 24 24 C 1.46901 * 111.26783 * 63.10344 * 12 11 10 25 25 C 1.47077 * 120.88422 * 26.32109 * 9 7 2 26 26 H 0.96997 * 120.00192 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.62307 * 111.50261 * 10 9 7 28 28 H 1.08994 * 109.79242 * 351.01283 * 10 9 7 29 29 H 1.08996 * 109.49040 * 186.21398 * 11 10 9 30 30 H 1.09004 * 109.51203 * 66.14653 * 11 10 9 31 31 H 1.09002 * 109.46469 * 44.61043 * 13 12 11 32 32 H 1.08998 * 109.47309 * 284.61546 * 13 12 11 33 33 H 1.07998 * 119.50738 * 359.97438 * 15 14 13 34 34 H 1.08008 * 119.50596 * 179.97438 * 16 15 14 35 35 H 1.08000 * 120.17304 * 179.70557 * 17 16 15 36 36 H 1.08002 * 120.17388 * 359.92631 * 19 18 17 37 37 H 1.08008 * 119.49961 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.50321 * 179.97438 * 21 20 19 39 39 H 1.08008 * 120.16752 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.49474 * 56.85438 * 24 12 11 41 41 H 1.09006 * 109.48850 * 176.93282 * 24 12 11 42 42 H 1.09004 * 109.62886 * 248.50685 * 25 9 7 43 43 H 1.09004 * 109.62559 * 9.07722 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5964 1.4120 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0440 -1.2290 0.3107 9 7 1.3841 -2.3541 -0.3958 10 6 1.8299 -3.6645 0.1017 11 6 2.0422 -4.5941 -1.0979 12 7 0.8209 -4.6220 -1.9139 13 6 0.9208 -5.6311 -2.9768 14 6 -0.4491 -5.9011 -3.5435 15 6 -0.7910 -5.4146 -4.7681 16 6 -2.0526 -5.6543 -5.3086 17 6 -2.9802 -6.3816 -4.6276 18 6 -2.6638 -6.9001 -3.3607 19 6 -3.5950 -7.6559 -2.6280 20 6 -3.2529 -8.1427 -1.4040 21 6 -1.9909 -7.9029 -0.8633 22 6 -1.0635 -7.1757 -1.5439 23 6 -1.3801 -6.6567 -2.8111 24 6 0.5229 -3.2965 -2.4727 25 6 0.2483 -2.3139 -1.3294 26 1 -0.4850 0.8400 0.0004 27 1 1.0693 -4.0842 0.7600 28 1 2.7661 -3.5526 0.6485 29 1 2.2658 -5.6002 -0.7433 30 1 2.8735 -4.2274 -1.7000 31 1 1.3319 -6.5529 -2.5650 32 1 1.5749 -5.2629 -3.7671 33 1 -0.0736 -4.8341 -5.3290 34 1 -2.2986 -5.2565 -6.2821 35 1 -3.9558 -6.5553 -5.0571 36 1 -4.5771 -7.8488 -3.0338 37 1 -3.9705 -8.7229 -0.8428 38 1 -1.7451 -8.3004 0.1104 39 1 -0.0894 -6.9983 -1.1125 40 1 1.3754 -2.9475 -3.0555 41 1 -0.3553 -3.3617 -3.1151 42 1 -0.6643 -2.6037 -0.8086 43 1 0.1398 -1.3062 -1.7308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027541663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:00 Heat of formation + Delta-G solvation = 76.679321 kcal Electronic energy + Delta-G solvation = -23758.982682 eV Core-core repulsion = 20576.411838 eV Total energy + Delta-G solvation = -3182.570844 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.40245 -38.05778 -36.38873 -34.66670 -32.75119 -31.09323 -30.21084 -29.87379 -29.39241 -27.05014 -24.66958 -23.17975 -22.91959 -22.49885 -22.30061 -20.34225 -19.06669 -17.40748 -16.92611 -16.58106 -16.10550 -15.21747 -14.65047 -14.51848 -14.47893 -14.11552 -13.55876 -13.45533 -13.43493 -13.35387 -12.96655 -12.88957 -12.79698 -12.35039 -11.73476 -11.67186 -11.41946 -11.15667 -11.09844 -10.81671 -10.73763 -10.65077 -10.37629 -10.30007 -10.04219 -9.77604 -9.67168 -9.53219 -8.48070 -8.47509 -7.86613 -7.66326 -6.65070 -5.76206 -3.15870 0.65896 1.14951 2.18211 3.10950 3.38991 3.46189 3.47672 4.16557 4.50360 4.56075 4.68862 4.88244 4.96394 5.05615 5.17521 5.24288 5.37474 5.40790 5.46345 5.51075 5.52770 5.61479 5.69206 5.91150 5.92971 5.94752 6.12174 6.15781 6.22587 6.27451 6.34116 6.35130 6.37728 6.54066 6.57781 6.64952 6.72302 6.80648 6.95091 6.97492 7.14180 7.26025 7.60301 7.67378 7.72601 7.84535 8.45133 9.23123 9.87307 10.46088 11.32670 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.020824 B = 0.003978 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.287436 B = 7037.221008 C = 7293.072866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.594 5.594 10 C 0.150 3.850 11 C 0.044 3.956 12 N -0.525 5.525 13 C 0.087 3.913 14 C -0.047 4.047 15 C -0.120 4.120 16 C -0.111 4.111 17 C -0.116 4.116 18 C -0.051 4.051 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.130 4.130 22 C -0.078 4.078 23 C -0.033 4.033 24 C 0.037 3.963 25 C 0.180 3.820 26 H 0.253 0.747 27 H 0.025 0.975 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.028 0.972 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.024 0.976 41 H 0.061 0.939 42 H 0.026 0.974 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 -16.327 -8.352 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.318 5.318 10 C 0.023 3.977 11 C -0.086 4.086 12 N -0.249 5.249 13 C -0.040 4.040 14 C -0.048 4.048 15 C -0.139 4.139 16 C -0.129 4.129 17 C -0.134 4.134 18 C -0.051 4.051 19 C -0.135 4.135 20 C -0.132 4.132 21 C -0.148 4.148 22 C -0.095 4.095 23 C -0.034 4.034 24 C -0.092 4.092 25 C 0.054 3.946 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.150 0.850 40 H 0.042 0.958 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.492 -16.288 -8.003 18.696 hybrid contribution 0.949 1.212 -0.567 1.641 sum -3.543 -15.076 -8.570 17.700 Atomic orbital electron populations 1.70069 1.05233 1.25445 1.53717 1.24992 0.95207 0.98347 1.01075 0.86308 0.79228 0.83938 0.77548 1.21562 1.21793 1.20416 1.19203 0.93435 0.85237 1.40429 0.91630 1.44124 1.36833 1.00881 1.49926 1.20954 0.97752 0.86518 0.92488 1.22658 0.89934 0.99365 0.96601 1.61999 1.35763 1.06291 1.20869 1.21066 0.92137 0.96768 0.94065 1.19681 0.95606 0.95916 0.93594 1.20741 0.96893 1.00370 0.95923 1.20768 0.93648 0.98607 0.99907 1.20938 0.99388 0.98935 0.94162 1.18087 0.93680 0.98518 0.94860 1.20924 0.98652 0.98627 0.95293 1.20812 0.96665 0.99986 0.95770 1.20839 0.93911 0.99910 1.00123 1.21137 1.00142 0.95024 0.93235 1.17876 0.92965 0.97807 0.94722 1.22892 0.98743 0.88754 0.98810 1.20806 0.89342 0.96690 0.87729 0.93660 0.95725 0.92652 0.92084 0.95369 0.90410 0.94312 0.86342 0.86261 0.86009 0.86056 0.86430 0.86258 0.85037 0.95777 0.92034 0.95616 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 11.29 55.49 0.63 -25.99 16 2 C 0.00 0.07 4.87 -17.43 -0.08 -0.01 16 3 Si 0.90 21.90 29.60 -169.99 -5.03 16.87 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.25 -7.06 9.62 -15.06 -0.14 -7.21 16 8 H 0.07 1.79 7.90 -52.49 -0.41 1.38 16 9 N -0.59 -15.25 3.04 -172.01 -0.52 -15.77 16 10 C 0.15 3.20 6.69 -3.60 -0.02 3.17 16 11 C 0.04 0.77 5.61 -3.70 -0.02 0.75 16 12 N -0.52 -9.29 4.33 -235.76 -1.02 -10.32 16 13 C 0.09 1.27 4.27 -4.98 -0.02 1.25 16 14 C -0.05 -0.69 4.64 -104.53 -0.48 -1.18 16 15 C -0.12 -1.60 8.91 -39.93 -0.36 -1.96 16 16 C -0.11 -1.34 9.95 -39.93 -0.40 -1.73 16 17 C -0.12 -1.41 9.77 -39.49 -0.39 -1.79 16 18 C -0.05 -0.71 5.74 -106.83 -0.61 -1.32 16 19 C -0.12 -1.40 9.77 -39.49 -0.39 -1.78 16 20 C -0.11 -1.32 9.95 -39.93 -0.40 -1.72 16 21 C -0.13 -1.62 9.95 -39.93 -0.40 -2.01 16 22 C -0.08 -1.09 9.24 -39.49 -0.36 -1.46 16 23 C -0.03 -0.50 5.74 -106.84 -0.61 -1.11 16 24 C 0.04 0.74 5.46 -3.70 -0.02 0.72 16 25 C 0.18 4.47 5.44 -3.61 -0.02 4.45 16 26 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 29 H 0.06 0.90 7.93 -51.93 -0.41 0.49 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.01 7.05 -51.93 -0.37 0.65 16 32 H 0.04 0.55 7.84 -51.93 -0.41 0.14 16 33 H 0.12 1.43 7.96 -52.49 -0.42 1.01 16 34 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 39 H 0.13 1.82 6.60 -52.48 -0.35 1.48 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 1.18 6.76 -51.93 -0.35 0.83 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 2.31 6.18 -51.93 -0.32 1.99 16 LS Contribution 342.53 15.07 5.16 5.16 Total: -1.00 -30.94 342.53 -11.91 -42.84 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.39 Total: 0.14 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -4.73 Total: -12.93 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.92 Total: -52.08 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.94 -11.91 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027541663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.524 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds