Wall clock time and date at job start Tue Mar 31 2020 07:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00007 * 2 1 4 4 H 1.48502 * 109.46884 * 274.98843 * 3 2 1 5 5 H 1.48495 * 109.47105 * 34.98856 * 3 2 1 6 6 H 1.48497 * 109.46965 * 154.98880 * 3 2 1 7 7 C 1.38813 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00130 * 199.43869 * 7 2 1 9 9 N 1.36942 * 119.99873 * 19.44132 * 7 2 1 10 10 C 1.47084 * 120.87757 * 206.29543 * 9 7 2 11 11 C 1.53245 * 108.51953 * 231.20505 * 10 9 7 12 12 N 1.46904 * 109.34022 * 306.17515 * 11 10 9 13 13 C 1.46904 * 110.99896 * 187.25121 * 12 11 10 14 14 C 1.50694 * 109.46934 * 164.60801 * 13 12 11 15 15 C 1.36131 * 120.16979 * 105.71617 * 14 13 12 16 16 C 1.39329 * 120.98784 * 179.97438 * 15 14 13 17 17 C 1.36126 * 120.99236 * 0.02562 * 16 15 14 18 18 C 1.40502 * 119.65248 * 359.97438 * 17 16 15 19 19 C 1.40543 * 121.28982 * 180.02562 * 18 17 16 20 20 C 1.36089 * 119.64958 * 179.97438 * 19 18 17 21 21 C 1.39377 * 120.99810 * 0.02562 * 20 19 18 22 22 C 1.36088 * 120.99030 * 359.95860 * 21 20 19 23 23 C 1.40498 * 120.17638 * 285.68701 * 14 13 12 24 24 C 1.46901 * 111.26783 * 63.10344 * 12 11 10 25 25 C 1.47077 * 120.88422 * 26.32109 * 9 7 2 26 26 H 0.96997 * 120.00192 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.62307 * 111.50261 * 10 9 7 28 28 H 1.08994 * 109.79242 * 351.01283 * 10 9 7 29 29 H 1.08996 * 109.49040 * 186.21398 * 11 10 9 30 30 H 1.09004 * 109.51203 * 66.14653 * 11 10 9 31 31 H 1.09002 * 109.46469 * 44.61043 * 13 12 11 32 32 H 1.08998 * 109.47309 * 284.61546 * 13 12 11 33 33 H 1.07998 * 119.50738 * 359.97438 * 15 14 13 34 34 H 1.08008 * 119.50596 * 179.97438 * 16 15 14 35 35 H 1.08000 * 120.17304 * 179.70557 * 17 16 15 36 36 H 1.08002 * 120.17388 * 359.92631 * 19 18 17 37 37 H 1.08008 * 119.49961 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.50321 * 179.97438 * 21 20 19 39 39 H 1.08008 * 120.16752 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.49474 * 56.85438 * 24 12 11 41 41 H 1.09006 * 109.48850 * 176.93282 * 24 12 11 42 42 H 1.09004 * 109.62886 * 248.50685 * 25 9 7 43 43 H 1.09004 * 109.62559 * 9.07722 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5964 1.4120 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0440 -1.2290 0.3107 9 7 1.3841 -2.3541 -0.3958 10 6 1.8299 -3.6645 0.1017 11 6 2.0422 -4.5941 -1.0979 12 7 0.8209 -4.6220 -1.9139 13 6 0.9208 -5.6311 -2.9768 14 6 -0.4491 -5.9011 -3.5435 15 6 -0.7910 -5.4146 -4.7681 16 6 -2.0526 -5.6543 -5.3086 17 6 -2.9802 -6.3816 -4.6276 18 6 -2.6638 -6.9001 -3.3607 19 6 -3.5950 -7.6559 -2.6280 20 6 -3.2529 -8.1427 -1.4040 21 6 -1.9909 -7.9029 -0.8633 22 6 -1.0635 -7.1757 -1.5439 23 6 -1.3801 -6.6567 -2.8111 24 6 0.5229 -3.2965 -2.4727 25 6 0.2483 -2.3139 -1.3294 26 1 -0.4850 0.8400 0.0004 27 1 1.0693 -4.0842 0.7600 28 1 2.7661 -3.5526 0.6485 29 1 2.2658 -5.6002 -0.7433 30 1 2.8735 -4.2274 -1.7000 31 1 1.3319 -6.5529 -2.5650 32 1 1.5749 -5.2629 -3.7671 33 1 -0.0736 -4.8341 -5.3290 34 1 -2.2986 -5.2565 -6.2821 35 1 -3.9558 -6.5553 -5.0571 36 1 -4.5771 -7.8488 -3.0338 37 1 -3.9705 -8.7229 -0.8428 38 1 -1.7451 -8.3004 0.1104 39 1 -0.0894 -6.9983 -1.1125 40 1 1.3754 -2.9475 -3.0555 41 1 -0.3553 -3.3617 -3.1151 42 1 -0.6643 -2.6037 -0.8086 43 1 0.1398 -1.3062 -1.7308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027541663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:59 Heat of formation + Delta-G solvation = 60.216259 kcal Electronic energy + Delta-G solvation = -23759.696574 eV Core-core repulsion = 20576.411838 eV Total energy + Delta-G solvation = -3183.284736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.38580 -39.58009 -37.42206 -36.26642 -34.13861 -32.80710 -31.67651 -31.09770 -30.49850 -28.61947 -26.26659 -24.40116 -24.25261 -23.89902 -23.66781 -21.40273 -20.82490 -18.75323 -18.31890 -17.71372 -17.06730 -17.02458 -16.25585 -15.87322 -15.69582 -15.34197 -15.26361 -15.02509 -14.83044 -14.50022 -14.32585 -14.18274 -13.87217 -13.47652 -13.19218 -13.12259 -12.89061 -12.65572 -12.62868 -12.27704 -12.17314 -12.03306 -11.93637 -11.74079 -11.68415 -11.53717 -11.34021 -10.66549 -10.59563 -9.44082 -9.27319 -8.73907 -8.63282 -7.89251 -5.32750 -0.29709 0.18921 1.20497 1.45458 1.46737 1.56471 2.16675 2.49937 2.99282 3.25395 3.37136 3.67060 3.70316 3.92226 4.05337 4.13294 4.25380 4.27296 4.29032 4.34822 4.40560 4.50081 4.58432 4.59627 4.66019 4.69145 4.71238 4.75850 4.89123 4.95923 5.02819 5.16571 5.18019 5.30962 5.34127 5.40256 5.44941 5.59299 5.60543 5.63669 5.71326 5.82690 6.01697 6.18183 6.21347 6.26132 6.35482 7.11164 7.82473 8.37431 9.17956 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.020824 B = 0.003978 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.287436 B = 7037.221008 C = 7293.072866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.265 4.265 8 H 0.069 0.931 9 N -0.612 5.612 10 C 0.145 3.855 11 C 0.055 3.945 12 N -0.531 5.531 13 C 0.095 3.905 14 C -0.071 4.071 15 C -0.125 4.125 16 C -0.121 4.121 17 C -0.115 4.115 18 C -0.075 4.075 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.133 4.133 22 C -0.102 4.102 23 C -0.054 4.054 24 C 0.059 3.941 25 C 0.191 3.809 26 H 0.250 0.750 27 H 0.013 0.987 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.027 0.973 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.127 0.873 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.021 0.979 41 H 0.068 0.932 42 H -0.009 1.009 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 -17.726 -9.300 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.395 4.395 8 H 0.087 0.913 9 N -0.336 5.336 10 C 0.019 3.981 11 C -0.074 4.074 12 N -0.256 5.256 13 C -0.032 4.032 14 C -0.072 4.072 15 C -0.144 4.144 16 C -0.138 4.138 17 C -0.133 4.133 18 C -0.076 4.076 19 C -0.137 4.137 20 C -0.139 4.139 21 C -0.151 4.151 22 C -0.120 4.120 23 C -0.055 4.055 24 C -0.071 4.071 25 C 0.065 3.935 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.045 0.955 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.145 0.855 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.039 0.961 41 H 0.087 0.913 42 H 0.009 0.991 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.405 -17.726 -8.954 20.342 hybrid contribution 0.859 1.550 -0.235 1.788 sum -3.545 -16.176 -9.189 18.938 Atomic orbital electron populations 1.70230 1.06819 1.25879 1.55255 1.25784 0.95943 1.01572 1.01283 0.85249 0.78315 0.79541 0.77360 1.21314 1.22160 1.19061 1.19564 0.93768 0.86388 1.39826 0.91286 1.44399 1.36774 1.01963 1.50497 1.21123 0.97436 0.85369 0.94166 1.22508 0.89724 1.00189 0.94966 1.61891 1.36031 1.05443 1.22245 1.21051 0.92823 0.96118 0.93205 1.19734 0.95712 0.97317 0.94426 1.20992 0.97769 0.99952 0.95703 1.21085 0.93124 0.98609 1.01032 1.21306 1.00537 0.97938 0.93528 1.18456 0.93810 0.99373 0.95911 1.21293 0.99439 0.97699 0.95291 1.21168 0.96797 0.99991 0.95976 1.21159 0.94118 0.99085 1.00688 1.21210 1.00607 0.96519 0.93688 1.18123 0.93776 0.98334 0.95219 1.22471 0.98902 0.89138 0.96577 1.20510 0.88089 0.96221 0.88699 0.94109 0.96860 0.91942 0.88447 0.95495 0.88713 0.93600 0.85494 0.83730 0.83308 0.83412 0.83677 0.84571 0.85525 0.96081 0.91340 0.99072 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.18 11.29 21.65 0.24 -56.93 16 2 C -0.05 -2.88 4.87 84.86 0.41 -2.47 16 3 Si 0.97 45.63 29.60 68.60 2.03 47.66 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.27 -15.00 9.62 84.03 0.81 -14.19 16 8 H 0.07 3.77 7.90 -2.91 -0.02 3.75 16 9 N -0.61 -32.07 3.04 -698.13 -2.12 -34.19 16 10 C 0.14 6.18 6.69 86.35 0.58 6.75 16 11 C 0.06 1.87 5.61 86.38 0.48 2.35 16 12 N -0.53 -18.48 4.33 -899.80 -3.90 -22.38 16 13 C 0.09 2.63 4.27 85.55 0.37 3.00 16 14 C -0.07 -2.02 4.64 -19.81 -0.09 -2.11 16 15 C -0.13 -3.19 8.91 22.04 0.20 -2.99 16 16 C -0.12 -2.67 9.95 22.04 0.22 -2.45 16 17 C -0.12 -2.55 9.77 22.33 0.22 -2.34 16 18 C -0.08 -1.96 5.74 -21.30 -0.12 -2.09 16 19 C -0.12 -2.60 9.77 22.33 0.22 -2.38 16 20 C -0.12 -2.55 9.95 22.04 0.22 -2.33 16 21 C -0.13 -3.14 9.95 22.04 0.22 -2.92 16 22 C -0.10 -2.82 9.24 22.33 0.21 -2.62 16 23 C -0.05 -1.57 5.74 -21.30 -0.12 -1.69 16 24 C 0.06 2.37 5.46 86.38 0.47 2.84 16 25 C 0.19 9.83 5.44 86.35 0.47 10.30 16 26 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 2.53 7.96 -2.39 -0.02 2.51 16 29 H 0.10 2.63 7.93 -2.39 -0.02 2.61 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 2.29 7.05 -2.39 -0.02 2.27 16 32 H 0.05 1.21 7.84 -2.39 -0.02 1.20 16 33 H 0.13 2.89 7.96 -2.91 -0.02 2.87 16 34 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 36 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 38 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 39 H 0.13 3.46 6.60 -2.91 -0.02 3.44 16 40 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 2.66 6.76 -2.38 -0.02 2.64 16 42 H -0.01 -0.51 8.14 -2.38 -0.02 -0.52 16 43 H 0.05 2.97 6.18 -2.38 -0.01 2.96 16 Total: -1.00 -68.50 342.53 1.99 -66.51 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.99 Total: 14.66 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 4.75 Total: -15.33 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -5.77 Total: -113.51 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -68.50 1.99 -66.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027541663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.723 kcal (2) G-P(sol) polarization free energy of solvation -68.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds