Wall clock time and date at job start Tue Mar 31 2020 07:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47500 * 2 1 4 4 C 1.53006 * 109.47328 * 175.47880 * 3 2 1 5 5 C 1.53001 * 109.46837 * 294.42271 * 4 3 2 6 6 N 1.46498 * 109.47224 * 295.47934 * 3 2 1 7 7 C 1.34956 * 126.03528 * 274.99844 * 6 3 2 8 8 C 1.35315 * 107.74389 * 180.20506 * 7 6 3 9 9 C 1.39872 * 107.92107 * 359.63774 * 8 7 6 10 10 C 1.50700 * 125.89779 * 180.13865 * 9 8 7 11 11 S 1.81398 * 109.47205 * 270.24113 * 10 9 8 12 12 C 1.81405 * 102.99916 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46936 * 179.97438 * 12 11 10 14 14 C 1.53008 * 109.46880 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47123 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99683 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00128 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00163 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00376 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47315 * 89.99546 * 19 17 15 21 21 H 1.48497 * 109.47284 * 209.99913 * 19 17 15 22 22 H 1.48498 * 109.46815 * 329.99634 * 19 17 15 23 23 N 1.30837 * 108.20232 * 0.36742 * 9 8 7 24 24 H 1.09002 * 109.47466 * 186.53496 * 1 2 3 25 25 H 1.09005 * 109.46917 * 306.53508 * 1 2 3 26 26 H 1.09000 * 109.47332 * 66.52755 * 1 2 3 27 27 H 1.09004 * 109.46722 * 239.99879 * 2 1 3 28 28 H 1.09000 * 109.47241 * 120.00346 * 2 1 3 29 29 H 1.09001 * 109.47438 * 55.47896 * 3 2 1 30 30 H 1.08999 * 109.47017 * 54.42206 * 4 3 2 31 31 H 1.09001 * 109.46787 * 174.42529 * 4 3 2 32 32 H 1.09007 * 109.47355 * 306.21611 * 5 4 3 33 33 H 1.09000 * 109.47210 * 66.21561 * 5 4 3 34 34 H 1.09001 * 109.47399 * 186.21028 * 5 4 3 35 35 H 1.07999 * 126.12458 * 359.94058 * 7 6 3 36 36 H 1.07999 * 126.03911 * 179.77258 * 8 7 6 37 37 H 1.08997 * 109.46737 * 30.24205 * 10 9 8 38 38 H 1.08999 * 109.46846 * 150.23819 * 10 9 8 39 39 H 1.09001 * 109.46966 * 300.00141 * 12 11 10 40 40 H 1.09001 * 109.47175 * 59.99576 * 12 11 10 41 41 H 1.09001 * 109.47473 * 299.99910 * 13 12 11 42 42 H 1.08995 * 109.47248 * 60.00719 * 13 12 11 43 43 H 1.09001 * 109.47113 * 300.00276 * 14 13 12 44 44 H 1.09003 * 109.46817 * 60.00475 * 14 13 12 45 45 H 0.96997 * 120.00727 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5659 1.4439 0.1137 5 6 3.9762 0.8826 1.4766 6 7 1.6427 2.1009 -1.2469 7 6 2.3099 2.0506 -2.4189 8 6 1.6204 2.7903 -3.3180 9 6 0.4888 3.3036 -2.6757 10 6 -0.5619 4.1820 -3.3045 11 16 -0.0916 5.9229 -3.1079 12 6 -1.4554 6.8075 -3.9131 13 6 -1.2049 8.3145 -3.8306 14 6 -2.3549 9.0606 -4.5103 15 6 -2.1079 10.5451 -4.4296 16 1 -1.2193 10.9189 -3.9426 17 6 -3.0162 11.4258 -4.9774 18 7 -4.0980 10.9706 -5.5708 19 14 -2.7097 13.2658 -4.8780 20 1 -1.9408 13.7047 -6.0702 21 1 -4.0096 13.9826 -4.8359 22 1 -1.9352 13.5729 -3.6488 23 7 0.5028 2.8936 -1.4333 24 1 -0.3634 -1.0210 0.1170 25 1 -0.3633 0.6118 0.8258 26 1 -0.3634 0.4093 -0.9426 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6121 1.9792 0.8467 30 1 3.9897 0.8245 -0.6768 31 1 3.9366 2.4641 0.0143 32 1 3.4642 1.4337 2.2656 33 1 3.7026 -0.1710 1.5331 34 1 5.0540 0.9852 1.6023 35 1 3.2315 1.5190 -2.6046 36 1 1.8941 2.9535 -4.3499 37 1 -0.6455 3.9458 -4.3653 38 1 -1.5209 4.0073 -2.8167 39 1 -1.5171 6.5057 -4.9586 40 1 -2.3918 6.5670 -3.4097 41 1 -1.1434 8.6160 -2.7849 42 1 -0.2685 8.5553 -4.3338 43 1 -2.4159 8.7591 -5.5559 44 1 -3.2916 8.8199 -4.0074 45 1 -4.7373 11.5902 -5.9559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269363667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:26 Heat of formation + Delta-G solvation = 39.856886 kcal Electronic energy + Delta-G solvation = -20522.664656 eV Core-core repulsion = 17473.941023 eV Total energy + Delta-G solvation = -3048.723633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.44207 -37.37321 -34.39516 -32.63602 -32.31285 -31.97535 -30.07892 -28.82957 -27.40056 -25.72500 -23.37536 -23.29231 -22.41151 -20.45176 -19.95377 -19.73858 -17.50876 -16.40948 -15.92827 -15.63775 -15.13285 -14.88003 -14.64200 -14.53552 -14.20414 -14.16616 -13.81130 -13.48886 -13.09453 -12.80346 -12.67440 -12.53469 -12.42442 -12.33900 -12.01752 -11.65864 -11.64036 -11.44418 -11.31211 -11.14214 -10.85771 -10.84403 -10.67251 -10.51500 -9.85368 -9.73672 -9.27465 -9.19070 -9.04520 -8.62680 -8.33332 -7.31878 -5.98420 -4.00646 1.48556 1.99966 2.26638 2.89009 3.10087 3.34527 3.40415 3.44705 3.94659 4.26087 4.46246 4.48409 4.51538 4.55041 4.67036 4.76819 4.87073 4.99899 5.09606 5.19294 5.19924 5.37444 5.39186 5.46099 5.50690 5.53913 5.58671 5.61243 5.63478 5.67368 5.71473 5.75111 5.92443 5.94656 6.20235 6.51553 6.61894 6.78059 6.90123 7.07482 7.63751 7.67730 7.80458 8.00938 8.43110 9.05846 9.63295 11.12912 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.033586 B = 0.002101 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.477915 B =13326.626696 C =13584.663937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.161 3.839 4 C -0.135 4.135 5 C -0.149 4.149 6 N -0.362 5.362 7 C 0.050 3.950 8 C -0.255 4.255 9 C 0.090 3.910 10 C -0.010 4.010 11 S -0.256 6.256 12 C -0.076 4.076 13 C -0.094 4.094 14 C 0.027 3.973 15 C -0.519 4.519 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 N -0.276 5.276 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.169 0.831 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.680 -26.246 10.368 31.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.059 3.941 4 C -0.174 4.174 5 C -0.207 4.207 6 N -0.145 5.145 7 C -0.095 4.095 8 C -0.286 4.286 9 C -0.076 4.076 10 C -0.160 4.160 11 S -0.029 6.029 12 C -0.224 4.224 13 C -0.133 4.133 14 C -0.012 4.012 15 C -0.558 4.558 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 N -0.099 5.099 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.187 0.813 36 H 0.165 0.835 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.859 -25.852 12.026 32.152 hybrid contribution -0.532 0.464 -1.454 1.616 sum 14.328 -25.388 10.572 31.010 Atomic orbital electron populations 1.21733 0.94672 1.01522 1.02887 1.22027 0.97447 0.94793 1.03096 1.21446 0.95144 0.93221 0.84266 1.21913 0.93125 1.02925 0.99398 1.21770 1.01926 1.01256 0.95782 1.48738 1.18185 1.38695 1.08886 1.22379 0.99260 1.01658 0.86245 1.21359 0.98125 1.07353 1.01742 1.21403 0.96487 0.98016 0.91732 1.21501 0.98176 0.93573 1.02730 1.87094 1.36971 1.00298 1.78564 1.23659 0.96879 1.00146 1.01713 1.21456 1.01562 0.88701 1.01621 1.19110 0.92189 0.94322 0.95546 1.21232 1.06700 0.91374 1.36468 0.92549 1.25025 0.95147 0.99008 0.95330 1.69963 1.10989 1.34645 1.37947 0.86570 0.77500 0.85328 0.78483 1.20646 1.21240 1.19837 1.77366 1.04074 1.10989 1.17427 0.92635 0.92311 0.92313 0.91401 0.89827 0.87982 0.90918 0.90656 0.92085 0.92036 0.91781 0.81339 0.83466 0.88445 0.88978 0.90452 0.90507 0.92412 0.92390 0.96399 0.96407 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.72 37.16 0.36 -0.82 16 2 C -0.14 -0.83 5.48 -26.74 -0.15 -0.98 16 3 C 0.16 1.21 2.79 -67.93 -0.19 1.02 16 4 C -0.13 -0.73 4.91 -26.73 -0.13 -0.86 16 5 C -0.15 -0.59 9.53 37.16 0.35 -0.23 16 6 N -0.36 -3.85 3.09 -54.86 -0.17 -4.02 16 7 C 0.05 0.48 10.61 -17.22 -0.18 0.30 16 8 C -0.26 -2.96 10.74 -40.01 -0.43 -3.39 16 9 C 0.09 1.23 6.48 -82.40 -0.53 0.69 16 10 C -0.01 -0.14 6.50 36.01 0.23 0.09 16 11 S -0.26 -4.28 21.72 -107.50 -2.33 -6.62 16 12 C -0.08 -1.35 5.94 37.15 0.22 -1.13 16 13 C -0.09 -2.02 5.16 -26.73 -0.14 -2.16 16 14 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 15 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 19 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 N -0.28 -3.84 12.27 33.67 0.41 -3.43 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.60 7.62 -51.93 -0.40 0.21 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.36 6.52 -51.93 -0.34 0.02 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.32 7.45 -51.93 -0.39 -0.07 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.19 6.79 -51.93 -0.35 -0.16 16 34 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.17 1.03 7.42 -52.49 -0.39 0.64 16 36 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.22 8.14 -51.92 -0.42 0.79 16 39 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 40 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -32.46 380.65 -9.94 -42.40 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -8.17 Total: -3.97 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -1.13 Total: -20.64 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.98 Total: -33.86 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -2.33 Total: -6.62 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.46 -9.94 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269363667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.257 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds